Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 2.1e-101 372.5 207 100.0
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 4.5e-99 364.8 207 98.1
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 1.6e-96 356.3 207 96.1
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 7.7e-83 310.8 204 85.3
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 5.5e-81 304.7 209 84.2
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 4.4e-78 295.0 209 84.2
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 1.3e-69 266.9 204 71.6
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 2.0e-67 259.6 212 64.6
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 2.5e-65 252.7 208 65.4
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 9.4e-65 250.8 208 66.8
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 2.1e-64 249.6 207 65.2
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 1.4e-63 246.9 217 64.1
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 1.7e-61 240.0 208 65.4
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 2.2e-61 239.6 202 69.8
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 1.1e-60 237.3 198 70.2
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 3.1e-60 235.7 212 63.2
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 4.1e-60 235.3 214 64.0
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 5.3e-60 235.0 207 61.8
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 7.0e-60 234.6 207 69.1
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 4.5e-59 231.9 216 67.1
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 5.9e-59 231.5 208 62.5
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 1.7e-58 229.9 212 61.8
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 2.2e-58 229.6 208 63.0
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 3.8e-58 228.8 208 67.3
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 3.8e-58 228.8 202 63.4
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 5.0e-58 228.4 206 61.2
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 6.5e-58 228.0 218 63.3
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 6.5e-58 228.0 223 66.8
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 3.2e-57 225.7 207 65.7
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 3.2e-57 225.7 148 73.6
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 5.5e-57 224.9 206 62.1
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 5.5e-57 224.9 214 62.1
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 1.2e-56 223.8 207 60.4
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 2.7e-56 222.6 211 60.2
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 3.6e-56 222.2 206 62.1
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 6.1e-56 221.5 206 63.1
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 1.4e-55 220.3 207 63.8
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 1.4e-55 220.3 211 60.2
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 2.3e-55 219.5 207 63.8
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 2.3e-55 219.5 217 62.7
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 4.0e-55 218.8 217 64.5
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.2e-54 217.2 208 58.7
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.5e-54 216.9 208 58.7
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 1.5e-54 216.9 213 64.3
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 2.0e-54 216.5 207 58.9
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 2.0e-54 216.5 207 59.4
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 3.4e-54 215.7 147 72.8
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 3.4e-54 215.7 208 60.1
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 4.4e-54 215.3 205 59.0
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.4e-54 215.3 207 58.9
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 4.4e-54 215.3 220 65.0
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 4.4e-54 215.3 214 63.1
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 7.5e-54 214.5 203 61.1
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 9.8e-54 214.2 212 57.1
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 2.2e-53 213.0 207 56.0
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 2.8e-53 212.6 149 69.8
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 3.7e-53 212.2 210 58.6
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 6.3e-53 211.5 211 58.8
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 1.1e-52 210.7 208 56.7
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 1.1e-52 210.7 210 55.7
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 1.8e-52 209.9 115 85.2
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 3.1e-52 209.1 207 57.0
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.1e-52 208.8 147 78.9
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 4.1e-52 208.8 209 61.2
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 5.4e-52 208.4 207 58.0
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 5.4e-52 208.4 211 58.3
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 5.4e-52 208.4 115 81.7
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 7.0e-52 208.0 209 61.2
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 9.1e-52 207.6 207 63.8
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 1.6e-51 206.8 191 59.7
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 3.5e-51 205.7 201 57.7
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 3.5e-51 205.7 201 57.7
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 7.7e-51 204.5 114 83.3
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.0e-50 204.1 207 56.0
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 1.0e-50 204.1 200 56.5
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 1.7e-50 203.4 181 60.2
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 2.3e-50 203.0 202 56.9
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 3.8e-50 202.2 181 61.3
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 5.0e-50 201.8 200 57.5
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 5.0e-50 201.8 225 53.3
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 8.6e-50 201.1 114 81.6
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 1.5e-49 200.3 208 54.8
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 2.5e-49 199.5 203 55.2
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 3.3e-49 199.1 113 81.4
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 3.3e-49 199.1 113 77.9
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 4.2e-49 198.7 179 62.6
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 4.2e-49 198.7 113 81.4
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 5.5e-49 198.4 113 81.4
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 9.5e-49 197.6 113 79.6
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 2.8e-48 196.1 113 77.0
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 3.6e-48 195.7 111 82.0
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 3.6e-48 195.7 163 65.6
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 4.7e-48 195.3 111 82.0
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 4.7e-48 195.3 148 75.0
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 6.1e-48 194.9 111 82.0
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 6.1e-48 194.9 111 82.0
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 6.1e-48 194.9 111 82.0
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 6.1e-48 194.9 111 82.0
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 6.1e-48 194.9 208 53.8
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 8.0e-48 194.5 111 81.1
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 3.0e-47 192.6 184 57.1
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.5e-46 190.3 195 60.5
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 4.9e-45 185.3 154 67.5
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 1.8e-44 183.3 106 78.3
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 1.8e-44 183.3 208 51.0
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 2.0e-43 179.9 167 53.9
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.0e-42 177.6 116 73.3
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 3.8e-42 175.6 116 71.6
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 3.8e-42 175.6 184 61.4
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 6.6e-42 174.9 180 53.9
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 3.3e-41 172.6 107 73.8
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 7.3e-41 171.4 109 75.2
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 1.6e-40 170.2 186 54.8
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 1.8e-39 166.8 113 67.3
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.8e-39 166.8 109 73.4
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 2.3e-39 166.4 108 70.4
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 6.8e-39 164.9 177 59.3
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 1.2e-38 164.1 111 69.4
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.5e-38 163.7 109 66.1
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.5e-38 163.7 154 64.9
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 1.7e-37 160.2 119 63.9
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 3.0e-34 149.4 179 53.6
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 4.1e-28 129.0 109 54.1
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 2.1e-27 126.7 110 51.8
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 5.8e-22 108.6 108 50.0
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 1.3e-21 107.5 144 39.6
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.4e-15 87.4 90 48.9
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 1.8e-07 60.5 123 36.6


User provided reference genes

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