Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 2.4e-181 638.6 313 100.0
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 1.3e-174 616.3 305 98.4
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 5.4e-173 610.9 305 97.4
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 3.1e-152 542.0 312 85.3
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 1.1e-133 480.3 313 78.6
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 3.2e-133 478.8 302 75.8
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 9.1e-128 460.7 300 72.7
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 1.5e-127 459.9 316 71.2
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 4.5e-127 458.4 302 73.2
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 2.2e-126 456.1 302 74.2
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 1.1e-125 453.8 303 71.9
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 1.1e-125 453.8 306 73.9
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 3.2e-125 452.2 307 72.3
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 7.9e-124 447.6 318 70.4
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 5.1e-123 444.9 308 69.5
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 5.7e-122 441.4 308 70.5
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 1.3e-121 440.3 312 67.0
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 1.7e-121 439.9 302 71.2
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 2.4e-120 436.0 312 67.9
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 1.2e-119 433.7 297 67.7
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 1.2e-119 433.7 300 67.3
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 7.7e-119 431.0 307 67.4
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 1.3e-118 430.3 306 68.3
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 1.7e-118 429.9 307 66.8
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 1.7e-118 429.9 306 66.0
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 5.0e-118 428.3 303 67.7
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 5.0e-118 428.3 302 67.5
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 6.5e-118 427.9 303 68.0
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 1.1e-117 427.2 296 68.2
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 2.5e-117 426.0 304 66.8
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 2.5e-117 426.0 306 65.4
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 3.2e-117 425.6 306 65.7
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 3.2e-117 425.6 320 67.2
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 1.2e-116 423.7 313 69.0
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 2.7e-116 422.5 298 67.1
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 5.2e-115 418.3 307 66.4
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 6.7e-115 417.9 292 67.8
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 1.1e-114 417.2 313 64.9
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 2.0e-114 416.4 308 66.6
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 4.4e-114 415.2 299 65.6
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 5.7e-114 414.8 304 65.1
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 7.4e-114 414.5 299 66.9
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 1.7e-113 413.3 307 66.4
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 2.2e-113 412.9 304 65.8
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 4.8e-113 411.8 304 65.8
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 1.1e-112 410.6 293 66.2
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 1.8e-112 409.8 304 65.8
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 3.1e-112 409.1 300 68.3
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 2.0e-111 406.4 300 64.7
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 2.6e-111 406.0 298 65.4
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 4.5e-111 405.2 307 63.5
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 4.5e-111 405.2 294 65.3
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 1.3e-110 403.7 301 65.4
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 2.2e-110 402.9 311 63.3
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 2.2e-110 402.9 290 65.5
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 2.2e-110 402.9 302 63.2
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 6.5e-110 401.4 302 65.6
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 8.5e-110 401.0 309 63.1
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 1.1e-109 400.6 302 65.2
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 2.5e-109 399.4 302 64.6
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 5.5e-109 398.3 307 64.2
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 5.5e-109 398.3 292 66.4
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 5.5e-109 398.3 303 62.7
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 1.2e-108 397.1 307 63.5
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 2.1e-108 396.4 294 64.6
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.7e-108 396.0 299 65.6
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 3.6e-108 395.6 302 64.9
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 6.1e-108 394.8 301 63.1
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 8.0e-108 394.4 307 63.2
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 1.4e-107 393.7 298 63.1
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.4e-107 393.7 311 61.7
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 1.8e-107 393.3 307 63.2
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 2.3e-107 392.9 298 63.8
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 2.0e-106 389.8 300 63.7
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 4.4e-106 388.7 296 63.2
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 1.3e-105 387.1 307 62.5
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 2.2e-105 386.3 305 63.0
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 8.2e-105 384.4 297 63.6
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 3.2e-101 372.5 298 62.1
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 8.8e-99 364.4 240 74.2
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 8.3e-97 357.8 306 61.1
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 1.6e-95 353.6 308 57.5
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 6.6e-94 348.2 299 56.2
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 4.7e-92 342.0 298 57.4
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 8.3e-89 331.3 192 81.2
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 1.1e-88 330.9 307 56.4
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 1.4e-88 330.5 213 77.0
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 2.9e-86 322.8 259 61.4
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 4.7e-84 315.5 229 65.5
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 8.0e-84 314.7 238 65.1
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 3.1e-83 312.8 237 65.0
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 7.0e-80 301.6 275 55.3
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.2e-79 300.8 300 53.3
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 1.1e-77 294.3 420 39.8
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 4.9e-73 278.9 206 68.9
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 9.2e-72 274.6 234 60.7
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 4.0e-67 259.2 305 44.9
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 1.7e-65 253.8 190 66.3
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.4e-64 250.0 299 46.8
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 9.2e-64 248.1 199 60.8
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 6.8e-59 231.9 139 75.5
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 8.9e-59 231.5 254 50.4
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 4.9e-57 225.7 298 45.0
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 4.2e-56 222.6 165 61.2
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 8.7e-54 214.9 166 62.0
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 4.7e-52 209.1 167 59.9
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 4.4e-50 202.6 145 65.5
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 7.6e-50 201.8 142 66.9
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 7.6e-50 201.8 142 66.9
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 3.2e-48 196.4 134 68.7
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 5.4e-48 195.7 161 59.0
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 2.1e-44 183.7 128 66.4
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 1.1e-43 181.4 160 55.6
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.4e-42 176.4 161 57.1
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.4e-42 176.4 105 76.2
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 2.5e-37 160.2 116 69.8
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 2.0e-34 150.6 128 58.6
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 6.7e-30 135.6 104 64.4
AUR62000980 Chenopodium quinoa HOM05D005899 ORTHO05D007445 4.9e-25 119.4 90 66.7
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.3e-22 111.3 103 56.3
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.1e-21 108.2 103 57.3
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.1e-21 108.2 103 57.3
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.5e-21 107.1 104 56.7
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 8.2e-20 102.1 153 37.3
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 2.4e-19 100.5 138 42.0
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.3e-17 94.7 88 54.5
unitig_21.g20175 Utricularia gibba HOM05D005899 ORTHO05D007445 3.2e-16 90.1 73 61.6
TAR365G0745 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.0e-09 68.6 55 60.0
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.2e-08 63.5 47 68.1
FAN06G4129 Fragaria x ananassa HOM05D005899 ORTHO05D045384 5.1e-06 56.2 68 45.6
FvH4_7g17710 Fragaria vesca HOM05D005899 ORTHO05D045384 8.8e-06 55.5 69 43.5


User provided reference genes

Program Settings