Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 3.0e-163 578.6 320 100.0
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 4.7e-132 474.9 332 81.6
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 1.0e-126 457.2 310 86.1
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 7.6e-106 387.9 253 74.7
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.5e-77 293.9 235 69.4
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.7e-76 290.4 235 63.0
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 2.4e-59 233.4 316 43.4
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 4.2e-56 222.6 284 42.6
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 7.2e-56 221.9 281 44.1
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 3.6e-55 219.5 287 42.5
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 3.6e-55 219.5 309 45.6
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 7.5e-53 211.8 327 39.4
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.3e-52 211.1 286 43.7
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 4.9e-52 209.1 276 42.0
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 1.4e-51 207.6 196 58.7
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 7.0e-51 205.3 336 38.7
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 7.8e-50 201.8 330 40.0
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 1.3e-49 201.1 272 40.8
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 1.7e-49 200.7 294 38.8
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 2.3e-49 200.3 276 40.6
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 2.9e-49 199.9 245 44.5
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 1.5e-48 197.6 173 53.8
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 1.9e-48 197.2 323 41.2
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 2.5e-48 196.8 233 43.8
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 9.5e-48 194.9 287 41.1
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 1.6e-47 194.1 259 40.2
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 2.1e-47 193.7 197 50.3
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 2.8e-47 193.4 291 41.6
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 2.8e-47 193.4 287 41.5
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 2.8e-47 193.4 280 40.4
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 3.6e-47 193.0 189 49.7
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 4.7e-47 192.6 282 42.2
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 4.7e-47 192.6 282 42.2
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 1.4e-46 191.0 168 56.5
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 1.8e-46 190.7 279 40.5
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 2.3e-46 190.3 189 49.2
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 1.2e-45 188.0 186 49.5
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 1.7e-44 184.1 192 47.4
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 2.9e-44 183.3 289 40.5
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 8.3e-44 181.8 140 58.6
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 2.0e-42 177.2 303 37.6
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 2.5e-40 170.2 181 45.9
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 1.6e-39 167.5 242 41.3
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 2.3e-38 163.7 179 43.6
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 6.8e-38 162.2 103 67.0
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 6.8e-38 162.2 231 41.1
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 2.9e-36 156.8 165 45.5
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 3.5e-34 149.8 106 59.4
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 3.3e-32 143.3 221 37.1
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 1.2e-31 141.4 262 37.4
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 1.6e-31 141.0 187 41.2
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 2.0e-29 134.0 293 38.2
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.3e-28 131.3 294 37.1
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 3.7e-28 129.8 97 55.7
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 9.2e-27 125.2 307 32.9
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 3.6e-23 113.2 364 28.6
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 4.7e-23 112.8 158 37.3
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 1.8e-22 110.9 323 30.7
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 3.4e-21 106.7 224 34.8
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 8.4e-20 102.1 191 35.6
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 1.1e-19 101.7 180 33.9
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 5.4e-19 99.4 185 33.5
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 3.9e-17 93.2 117 41.0
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 8.7e-17 92.0 117 41.0
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.1e-16 91.7 130 37.7
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.6e-15 87.8 144 32.6
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 4.7e-15 86.3 120 37.5
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 6.2e-15 85.9 120 37.5
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 6.2e-15 85.9 120 37.5
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 6.2e-15 85.9 128 37.5
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 6.2e-15 85.9 108 42.6
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 6.2e-15 85.9 129 34.9
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 8.1e-15 85.5 120 37.5
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 1.1e-14 85.1 126 38.1
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 1.1e-14 85.1 150 34.0
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 1.8e-14 84.3 124 36.3
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 4.0e-14 83.2 111 39.6
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 9.0e-14 82.0 148 35.8
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 9.0e-14 82.0 115 34.8
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.2e-13 81.6 152 32.2
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 1.5e-13 81.3 110 39.1
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 3.4e-13 80.1 110 38.2
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 3.4e-13 80.1 110 38.2
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 4.4e-13 79.7 130 36.2
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 7.6e-13 79.0 121 32.2
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 7.6e-13 79.0 156 33.3
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 9.9e-13 78.6 143 35.0
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 2.2e-12 77.4 126 35.7
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 3.8e-12 76.6 119 38.7
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 3.8e-12 76.6 145 30.3
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 4.9e-12 76.3 130 34.6
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 6.4e-12 75.9 155 34.2
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 6.4e-12 75.9 130 32.3
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 8.4e-12 75.5 147 33.3
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 1.9e-11 74.3 156 32.1
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 2.4e-11 73.9 178 32.6
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 7.1e-11 72.4 174 27.6
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 3.5e-10 70.1 193 26.4
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 4.6e-10 69.7 169 29.0
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 1.0e-09 68.6 202 27.2
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.7e-09 67.8 40 67.5
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.7e-09 67.8 40 67.5
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 2.3e-09 67.4 123 33.3
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 3.0e-09 67.0 76 39.5
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 3.0e-09 67.0 108 36.1
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 3.0e-09 67.0 138 27.5
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 3.9e-09 66.6 117 33.3
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 3.9e-09 66.6 142 34.5
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 5.1e-09 66.2 117 33.3
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 8.7e-09 65.5 137 29.2
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.3e-08 63.5 57 47.4
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 7.3e-08 62.4 61 50.8
Haze_16000 Corylus avellana HOM05D013106 ORTHO05D017812 9.6e-08 62.0 158 25.9
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 1.6e-07 61.2 188 29.8
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.1e-07 60.8 182 26.4
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 6.2e-07 59.3 74 37.8
Hma1.2p1_2569F.1_g324543 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 8.1e-07 58.9 56 48.2
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 8.1e-07 58.9 111 31.5
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 1.1e-06 58.5 50 46.0
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 1.1e-06 58.5 50 46.0
VMungo0331G0323 Vigna mungo HOM05D008573 ORTHO05D009911 1.1e-06 58.5 55 47.3
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.4e-06 58.2 126 32.5
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.4e-06 58.2 65 40.0
Hma1.2p1_0224F.1_g094550 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.8e-06 57.8 59 44.1
VMungo1215G1066 Vigna mungo HOM05D008573 ORTHO05D009911 1.8e-06 57.8 54 50.0
Hma1.2p1_0048F.1_g028060 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.0e-06 56.6 42 54.8
Hma1.2p1_0362F.1_g136570 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.0e-06 56.6 45 51.1
Hma1.2p1_1219F.1_g267960 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 5.3e-06 56.2 45 51.1
Hma1.2p1_1389F.1_g280030 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 5.3e-06 56.2 52 44.2
Hma1.2p1_0470F.1_g159220 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 9.0e-06 55.5 59 44.1
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 9.0e-06 55.5 121 35.5


User provided reference genes

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