Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 2.0e-176 622.5 317 100.0
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 9.9e-176 620.2 317 99.7
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 9.6e-171 603.6 316 96.8
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 6.9e-153 544.3 311 88.7
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.5e-147 526.6 316 83.9
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 4.9e-143 511.5 314 81.5
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 3.9e-140 501.9 296 85.1
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 1.1e-139 500.4 317 77.9
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 1.5e-139 500.0 311 79.7
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 4.8e-138 495.0 319 78.1
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 6.3e-138 494.6 318 77.0
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 8.2e-138 494.2 318 76.7
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 1.1e-137 493.8 318 78.0
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.4e-137 492.7 313 79.6
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 3.1e-137 492.3 319 77.7
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 4.1e-137 491.9 309 79.6
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 5.3e-137 491.5 318 77.0
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 5.3e-137 491.5 303 80.2
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 9.0e-137 490.7 317 78.5
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 1.5e-136 490.0 317 75.4
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 3.4e-136 488.8 318 78.0
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 4.5e-136 488.4 318 75.5
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 5.9e-136 488.0 303 80.2
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 1.0e-135 487.3 315 76.5
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 1.7e-135 486.5 320 76.2
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 5.0e-135 485.0 319 75.9
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 6.5e-135 484.6 315 77.5
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 1.1e-134 483.8 320 76.2
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 1.9e-134 483.0 311 78.5
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 1.9e-134 483.0 318 76.1
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 2.5e-134 482.6 317 74.1
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 3.2e-134 482.3 316 75.6
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 3.2e-134 482.3 313 77.0
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 4.2e-134 481.9 304 78.6
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 5.5e-134 481.5 317 76.3
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 7.2e-134 481.1 318 75.8
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 7.2e-134 481.1 318 75.8
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 9.3e-134 480.7 327 74.9
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 1.2e-133 480.3 320 76.6
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 2.7e-133 479.2 316 76.3
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 2.7e-133 479.2 310 76.5
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 2.7e-133 479.2 318 75.2
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 4.6e-133 478.4 303 77.6
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 6.1e-133 478.0 312 76.9
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 1.4e-132 476.9 323 74.6
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 3.0e-132 475.7 351 70.1
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 3.9e-132 475.3 310 78.1
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 5.1e-132 474.9 324 75.6
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 5.1e-132 474.9 324 75.6
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 5.1e-132 474.9 324 75.6
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 1.1e-131 473.8 327 74.0
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 1.1e-131 473.8 314 77.7
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 1.5e-131 473.4 303 77.9
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 1.9e-131 473.0 310 77.7
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 5.7e-131 471.5 323 74.3
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 5.7e-131 471.5 324 75.3
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 5.7e-131 471.5 361 67.6
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 1.3e-130 470.3 310 76.8
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 1.3e-130 470.3 310 77.1
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 1.3e-130 470.3 318 75.8
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.3e-130 470.3 318 75.5
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 1.7e-130 469.9 307 77.2
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 2.2e-130 469.5 324 75.0
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.8e-130 469.2 318 75.5
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 1.1e-129 467.2 318 73.9
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 1.1e-129 467.2 318 73.9
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 1.1e-129 467.2 318 73.9
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 1.1e-129 467.2 318 73.9
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 1.1e-129 467.2 318 73.9
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 1.4e-129 466.8 311 76.5
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 1.8e-129 466.5 302 78.1
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 1.5e-128 463.4 318 74.8
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 2.0e-128 463.0 315 74.9
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.6e-128 462.6 310 75.5
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 2.2e-127 459.5 312 74.4
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 8.5e-127 457.6 316 73.1
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 2.5e-126 456.1 299 76.9
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 9.4e-126 454.1 297 76.1
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 2.7e-125 452.6 307 74.3
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 2.3e-124 449.5 317 71.9
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 3.0e-124 449.1 333 70.9
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 6.7e-124 448.0 307 73.3
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 1.5e-123 446.8 308 72.7
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 2.0e-123 446.4 306 73.2
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 7.4e-123 444.5 314 73.6
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.3e-122 443.7 301 73.4
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 4.8e-122 441.8 314 73.2
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 1.4e-121 440.3 313 72.8
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 3.1e-121 439.1 321 71.3
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 5.3e-121 438.3 311 73.0
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 9.1e-121 437.6 296 74.7
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 1.0e-119 434.1 313 70.0
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 3.8e-119 432.2 320 70.0
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 3.8e-119 432.2 310 72.6
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.1e-118 430.6 308 73.4
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 4.2e-118 428.7 322 68.9
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 4.2e-118 428.7 322 68.9
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 5.5e-118 428.3 321 69.5
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 5.5e-118 428.3 325 68.0
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 1.2e-117 427.2 305 72.8
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 1.6e-117 426.8 292 74.3
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 6.1e-117 424.9 327 67.9
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 1.8e-116 423.3 261 80.1
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 8.8e-116 421.0 327 67.3
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 2.8e-114 416.0 326 66.9
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 6.3e-114 414.8 253 79.8
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 3.2e-110 402.5 301 69.1
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 6.3e-106 388.3 322 65.5
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.6e-104 383.6 306 67.3
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 2.7e-101 372.9 315 59.7
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 2.0e-99 366.7 257 72.0
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 5.7e-99 365.2 284 62.7
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 7.5e-99 364.8 292 67.8
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 7.5e-99 364.8 300 61.7
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.4e-97 360.5 228 79.8
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 4.1e-97 359.0 308 60.7
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 2.0e-96 356.7 231 76.6
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.7e-96 356.3 230 77.0
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 2.9e-95 352.8 272 61.8
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 1.9e-94 350.1 319 60.8
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 1.0e-92 344.4 236 75.8
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 1.4e-92 344.0 274 61.3
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 5.7e-91 338.6 272 68.4
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 1.0e-79 301.2 244 59.8
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 1.7e-74 283.9 291 48.1
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 3.5e-72 276.2 329 46.2
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.7e-71 273.9 242 61.6
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.9e-66 256.5 165 79.4
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 1.6e-64 250.8 149 80.5
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 1.1e-60 238.0 312 45.2
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 2.9e-50 203.4 226 44.2
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 4.2e-49 199.5 156 66.7
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 4.8e-45 186.0 112 82.1
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 1.2e-40 171.4 286 36.4
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 8.1e-37 158.7 359 32.6
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.3e-36 156.0 94 79.8
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.5e-35 154.5 94 78.7
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.5e-35 154.5 94 78.7
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 7.1e-33 145.6 97 79.4
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 2.1e-32 144.1 95 80.0
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.1e-31 139.4 193 45.1
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 4.2e-25 119.8 105 59.0
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 4.3e-22 109.8 82 65.9
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 5.3e-20 102.8 53 94.3
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 6.9e-20 102.4 71 74.6
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 4.2e-17 93.2 68 66.2
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 3.0e-15 87.0 55 80.0
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 1.3e-13 81.6 104 45.2
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.2e-13 80.9 81 58.0
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 3.1e-12 77.0 48 72.9
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 3.1e-12 77.0 48 72.9
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.1e-09 68.6 85 45.9


User provided reference genes

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