Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 1.9e-145 519.2 272 100.0
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 7.4e-126 454.1 241 99.2
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.2e-115 420.2 236 91.5
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 2.0e-115 419.5 236 91.5
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 4.5e-115 418.3 225 97.3
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 1.3e-111 406.8 241 88.8
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 9.0e-108 394.0 235 86.4
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 5.0e-90 335.1 242 73.1
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 3.2e-89 332.4 241 71.8
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 1.8e-84 316.6 244 69.3
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 4.1e-84 315.5 248 69.4
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 1.6e-83 313.5 243 68.7
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 1.0e-82 310.8 246 69.9
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 1.0e-82 310.8 244 68.4
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 1.9e-81 306.6 247 66.0
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 9.4e-81 304.3 245 69.0
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 5.2e-79 298.5 243 65.0
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 3.4e-78 295.8 247 66.4
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 9.1e-76 287.7 248 63.3
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 1.6e-75 287.0 251 64.5
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 2.7e-75 286.2 246 65.9
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 2.7e-75 286.2 240 66.2
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 4.5e-75 285.4 258 62.4
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 1.5e-73 280.4 242 64.0
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 2.5e-73 279.6 239 64.0
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 2.5e-73 279.6 243 65.0
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 2.1e-72 276.6 246 62.2
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 6.1e-72 275.0 243 63.0
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 2.3e-71 273.1 249 62.2
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 4.0e-71 272.3 244 64.3
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 4.0e-71 272.3 245 62.9
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 5.2e-71 271.9 247 63.2
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 6.8e-71 271.6 240 64.6
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.2e-70 270.8 248 62.1
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.5e-70 270.4 248 62.1
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 2.0e-70 270.0 247 64.4
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 3.4e-70 269.2 244 62.3
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 7.5e-70 268.1 248 61.3
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 9.8e-70 267.7 248 60.1
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 9.8e-70 267.7 240 62.9
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 1.7e-69 266.9 249 63.1
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 2.2e-69 266.5 250 60.8
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 3.7e-69 265.8 242 64.0
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 3.7e-69 265.8 239 61.5
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 3.7e-69 265.8 243 60.9
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 4.9e-69 265.4 242 62.8
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 4.9e-69 265.4 242 64.0
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 4.9e-69 265.4 248 60.9
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 6.3e-69 265.0 242 62.8
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 8.3e-69 264.6 243 63.0
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 9.2e-68 261.2 247 60.3
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 2.0e-67 260.0 244 60.7
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 2.7e-67 259.6 227 64.3
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 3.5e-67 259.2 240 61.7
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 4.5e-67 258.8 252 59.1
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 5.9e-67 258.5 244 60.7
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 7.7e-67 258.1 244 59.8
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 1.3e-66 257.3 248 59.3
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 1.7e-66 256.9 251 57.8
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 2.3e-66 256.5 239 60.3
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 2.3e-66 256.5 244 60.7
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 3.8e-66 255.8 246 61.0
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 5.0e-66 255.4 242 59.1
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 1.1e-65 254.2 249 59.8
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 1.5e-65 253.8 252 56.7
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 1.9e-65 253.4 249 61.0
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 1.9e-65 253.4 242 59.9
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 2.5e-65 253.1 247 59.5
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 4.3e-65 252.3 244 59.8
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 4.3e-65 252.3 244 59.8
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 4.7e-64 248.8 264 57.6
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 8.0e-64 248.1 252 55.2
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 1.2e-62 244.2 250 56.4
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 5.7e-62 241.9 233 58.8
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 9.8e-62 241.1 257 55.6
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.7e-61 240.4 238 58.8
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 2.9e-61 239.6 248 56.5
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 2.9e-61 239.6 255 55.3
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 2.9e-61 239.6 243 57.2
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 3.7e-61 239.2 255 55.3
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 4.9e-61 238.8 237 58.2
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 1.1e-60 237.7 248 56.9
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.4e-60 237.3 253 55.3
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 1.8e-60 236.9 251 55.4
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 3.2e-60 236.1 255 55.3
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 3.2e-60 236.1 249 56.2
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 3.2e-60 236.1 249 56.2
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 3.2e-60 236.1 252 54.8
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 3.2e-60 236.1 241 58.5
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.6e-59 233.8 243 56.0
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 2.0e-59 233.4 212 62.7
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 4.6e-59 232.3 253 54.2
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 5.9e-59 231.9 254 54.3
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 1.0e-58 231.1 237 58.2
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 3.9e-58 229.2 247 55.1
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 8.6e-58 228.0 232 56.5
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 8.6e-58 228.0 232 56.5
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 2.1e-56 223.4 177 66.7
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 2.1e-56 223.4 257 53.7
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 1.4e-55 220.7 242 56.2
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 3.1e-55 219.5 190 63.2
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 3.1e-55 219.5 263 51.0
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 1.2e-54 217.6 256 52.3
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.7e-53 213.8 248 51.6
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.1e-52 211.1 173 63.6
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 4.1e-52 209.1 231 51.9
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 4.3e-49 199.1 249 49.8
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 1.6e-48 197.2 249 49.4
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 6.2e-48 195.3 252 48.0
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 1.1e-47 194.5 248 48.8
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 4.0e-47 192.6 248 48.4
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 4.0e-47 192.6 248 48.4
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.4e-44 184.1 196 56.6
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 9.2e-44 181.4 130 76.2
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 1.7e-34 150.6 144 58.3
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.9e-33 147.1 241 41.9
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 7.3e-33 145.2 116 64.7
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 1.2e-30 137.9 116 64.7
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 2.4e-23 113.6 73 79.5
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 2.6e-22 110.2 197 35.5
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 3.8e-21 106.3 249 34.5
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 3.2e-20 103.2 133 48.9
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 5.4e-20 102.4 72 75.0
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 3.1e-15 86.7 84 52.4
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 4.5e-14 82.8 98 51.0
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 1.7e-13 80.9 149 35.6
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 2.4e-12 77.0 63 65.1
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 1.2e-11 74.7 122 45.1
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 1.1e-09 68.2 85 42.4
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 9.6e-09 65.1 54 57.4
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 2.1e-08 63.9 70 51.4


User provided reference genes

Program Settings