Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 1.1e-208 729.9 442 100.0
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 2.6e-205 718.8 442 98.9
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 5.5e-163 578.2 443 74.5
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.5e-128 463.8 459 61.4
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 1.3e-127 460.7 508 58.5
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 2.3e-108 396.7 442 58.4
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 4.3e-107 392.5 397 61.7
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 6.2e-106 388.7 409 61.1
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 5.6e-91 339.0 457 46.6
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.8e-81 307.4 454 43.2
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 7.6e-80 302.0 457 43.5
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 5.4e-78 295.8 460 42.0
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 9.3e-78 295.0 458 42.8
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 1.2e-77 294.7 456 41.9
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 7.9e-77 292.0 432 43.5
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 1.3e-76 291.2 453 43.7
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 6.7e-76 288.9 457 40.5
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 6.7e-76 288.9 457 41.4
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.9e-75 287.3 457 41.6
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 4.8e-74 282.7 457 39.4
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 6.9e-73 278.9 456 41.0
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 1.2e-72 278.1 453 42.8
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 1.5e-72 277.7 456 41.4
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 3.4e-72 276.6 464 39.0
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 4.9e-71 272.7 463 39.3
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 1.9e-70 270.8 468 42.5
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 4.2e-70 269.6 484 39.3
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 5.5e-70 269.2 465 38.9
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 2.7e-69 266.9 458 41.0
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 2.3e-68 263.8 448 41.1
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 3.0e-68 263.5 428 40.7
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 1.1e-67 261.5 447 40.5
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 5.7e-67 259.2 421 40.4
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 9.6e-67 258.5 421 39.0
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 2.4e-65 253.8 451 38.4
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 6.9e-65 252.3 452 39.4
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 6.9e-65 252.3 465 38.7
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 7.6e-64 248.8 518 37.1
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.3e-63 248.1 443 39.3
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 1.3e-63 248.1 517 36.9
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 6.5e-63 245.7 454 38.8
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 6.5e-63 245.7 509 36.3
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 8.4e-63 245.4 345 42.9
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 7.1e-62 242.3 311 48.2
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.2e-61 241.5 518 36.3
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.9e-60 236.5 507 36.3
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.9e-60 236.5 509 36.1
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 1.1e-59 235.0 459 34.6
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 2.5e-59 233.8 352 44.6
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 2.5e-59 233.8 444 37.8
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 1.6e-58 231.1 490 34.1
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 3.7e-58 229.9 477 35.6
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 4.8e-58 229.6 275 50.2
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 4.8e-58 229.6 450 38.0
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 8.2e-58 228.8 424 36.8
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 1.8e-57 227.6 482 35.9
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 2.4e-57 227.3 466 36.5
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.5e-56 224.6 418 37.8
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 1.7e-55 221.1 430 37.9
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 3.8e-55 219.9 442 36.9
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 7.2e-54 215.7 260 49.2
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 7.2e-54 215.7 419 37.5
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.1e-53 214.2 329 43.5
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 4.6e-53 213.0 463 35.4
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 4.6e-53 213.0 261 46.0
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 7.9e-53 212.2 444 36.5
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.4e-52 211.5 261 48.7
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.3e-52 210.7 283 45.2
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 2.0e-51 207.6 472 33.9
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 3.3e-51 206.8 447 32.9
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 2.2e-50 204.1 469 34.8
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 3.7e-50 203.4 408 37.3
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 6.3e-50 202.6 342 40.4
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 8.2e-50 202.2 471 35.0
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 1.1e-49 201.8 513 32.9
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 7.7e-48 195.7 426 36.6
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 6.5e-47 192.6 482 32.6
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 1.4e-46 191.4 465 32.9
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 2.5e-46 190.7 471 32.5
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 4.2e-46 189.9 482 32.0
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 5.5e-46 189.5 242 46.3
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 9.4e-46 188.7 469 32.8
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 1.2e-45 188.3 442 34.4
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 1.2e-45 188.3 453 36.4
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.7e-45 186.4 220 54.1
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 6.1e-45 186.0 251 47.0
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 2.3e-44 184.1 473 32.1
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 3.9e-44 183.3 347 37.2
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 8.8e-44 182.2 464 32.8
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 2.0e-43 181.0 499 31.7
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 3.3e-43 180.3 453 32.7
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 2.2e-42 177.6 467 32.3
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 8.2e-42 175.6 271 46.1
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.4e-41 174.9 251 43.8
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 2.4e-41 174.1 438 32.0
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 1.2e-40 171.8 261 42.1
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 5.9e-40 169.5 268 41.8
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 2.9e-39 167.2 280 39.6
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 3.8e-39 166.8 263 38.8
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 1.9e-38 164.5 449 28.3
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 4.2e-38 163.3 439 31.7
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 1.2e-37 161.8 454 29.5
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.6e-32 144.8 418 27.3
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.5e-30 138.3 368 29.6
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 9.4e-30 135.6 231 35.9
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 3.6e-29 133.7 461 30.4
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 3.6e-29 133.7 135 57.0
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 4.0e-28 130.2 361 31.0
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 4.8e-26 123.2 463 28.5
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 5.4e-25 119.8 279 35.1
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 5.9e-24 116.3 288 32.6
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 4.2e-22 110.2 277 33.2
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 8.0e-21 105.9 125 52.0
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 5.2e-20 103.2 115 51.3
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 3.4e-19 100.5 448 29.0
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 7.5e-19 99.4 309 30.7
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 2.9e-15 87.4 81 64.2
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 5.0e-15 86.7 261 31.4
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 5.6e-14 83.2 97 46.4
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 1.8e-12 78.2 118 39.0
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.2e-12 76.6 265 26.4
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 6.8e-12 76.3 140 36.4
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.8e-09 68.2 60 61.7
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 2.4e-09 67.8 146 30.1
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.4e-09 67.8 82 46.3
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 4.1e-09 67.0 131 41.2
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 1.6e-08 65.1 74 47.3
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 2.7e-08 64.3 151 30.5
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 4.6e-08 63.5 82 52.4
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.3e-07 61.2 84 48.8
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.0e-07 60.1 68 44.1
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.6e-07 59.7 71 43.7
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 5.6e-06 56.6 47 68.1
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 5.6e-06 56.6 99 28.3


User provided reference genes

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