Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g089930.2 Solanum lycopersicum HOM05D004789 ORTHO05D051096 3.7e-39 164.5 87 100.0
Sopen01g035780 Solanum pennellii HOM05D004789 ORTHO05D051096 1.1e-27 126.3 67 97.0
PGSC0003DMG400010518 Solanum tuberosum HOM05D004789 ORTHO05D006078 2.4e-14 82.0 55 80.0
CAN.G1807.2 Capsicum annuum HOM05D004789 ORTHO05D006078 4.2e-14 81.3 54 77.8
Nitab4.5_0000083g0070 Nicotiana tabacum HOM05D004789 ORTHO05D006078 4.2e-14 81.3 54 77.8
Nitab4.5_0001435g0010 Nicotiana tabacum HOM05D004789 ORTHO05D006078 4.2e-14 81.3 54 77.8
Solyc04g056540.3 Solanum lycopersicum HOM05D004789 ORTHO05D006078 4.2e-14 81.3 54 77.8
Sopen04g025480 Solanum pennellii HOM05D004789 ORTHO05D006078 4.2e-14 81.3 54 77.8
Lj2C731T11 Lonicera japonica HOM05D004789 ORTHO05D006078 1.2e-13 79.7 56 75.0
CSS0025571 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 2.1e-13 79.0 54 75.9
CSS0046891 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 2.1e-13 79.0 54 75.9
Dinv29093 Davidia involucrata HOM05D004789 ORTHO05D006078 2.1e-13 79.0 54 75.9
Hma1.2p1_0609F.1_g188420 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 2.1e-13 79.0 56 75.0
Hma1.2p1_0609F.1_g188430 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 2.1e-13 79.0 56 75.0
Rhsim05G0170800 Rhododendron simsii HOM05D004789 ORTHO05D006078 2.1e-13 79.0 54 75.9
RcHm_v2.0_Chr3g0447811 Rosa chinensis HOM05D004789 ORTHO05D006078 2.1e-13 79.0 56 75.0
HanXRQChr06g0173981 Helianthus annuus HOM05D004789 ORTHO05D006078 2.7e-13 78.6 54 77.8
HanXRQChr06g0174041 Helianthus annuus HOM05D004789 ORTHO05D006078 2.7e-13 78.6 54 77.8
Actinidia06832 Actinidia chinensis HOM05D004789 ORTHO05D006078 4.6e-13 77.8 56 73.2
Cpa.g.sc39.15 Carica papaya HOM05D004789 ORTHO05D006078 4.6e-13 77.8 41 92.7
DCAR_020684 Daucus carota HOM05D004789 ORTHO05D006078 7.8e-13 77.0 56 73.2
FvH4_6g00440 Fragaria vesca HOM05D004789 ORTHO05D006078 1.0e-12 76.6 56 73.2
FAN09G1869 Fragaria x ananassa HOM05D004789 ORTHO05D006078 1.0e-12 76.6 56 73.2
FAN14G5139 Fragaria x ananassa HOM05D004789 ORTHO05D006078 1.0e-12 76.6 41 90.2
Oeu009739.1 Olea europaea HOM05D004789 ORTHO05D006078 1.0e-12 76.6 54 75.9
QL01p049601 Quercus lobata HOM05D004789 ORTHO05D006078 1.0e-12 76.6 56 73.2
Eucgr.C00113 Eucalyptus grandis HOM05D004789 ORTHO05D006078 1.3e-12 76.3 56 73.2
Lsat_1_v5_gn_3_24661 Lactuca sativa HOM05D004789 ORTHO05D006078 1.3e-12 76.3 54 74.1
MD04G1245400 Malus domestica HOM05D004789 ORTHO05D006078 1.3e-12 76.3 56 73.2
MD13G1061000 Malus domestica HOM05D004789 ORTHO05D006078 1.3e-12 76.3 56 73.2
Phvul.008G053900 Phaseolus vulgaris HOM05D004789 ORTHO05D006078 1.3e-12 76.3 54 74.1
VMungo1383G0580 Vigna mungo HOM05D004789 ORTHO05D006078 1.3e-12 76.3 54 74.1
TWI36G0056 Tripterygium wilfordii HOM05D004789 ORTHO05D006078 2.3e-12 75.5 54 72.2
Lalb_Chr03g0038671 Lupinus albus HOM05D004789 ORTHO05D006078 3.0e-12 75.1 56 73.2
Prupe.6G362000 Prunus persica HOM05D004789 ORTHO05D006078 3.0e-12 75.1 56 71.4
Atru.BG.270.p Acer truncatum HOM05D004789 ORTHO05D006078 3.9e-12 74.7 56 69.6
arahy.Tifrunner.gnm1.ann1.537LAH Arachis hypogaea HOM05D004789 ORTHO05D006078 3.9e-12 74.7 54 72.2
arahy.Tifrunner.gnm1.ann1.66TKXZ Arachis hypogaea HOM05D004789 ORTHO05D006078 3.9e-12 74.7 54 72.2
Glyma.18G242600 Glycine max HOM05D004789 ORTHO05D006078 3.9e-12 74.7 54 72.2
HanXRQChr17g0538711 Helianthus annuus HOM05D004789 ORTHO05D006078 3.9e-12 74.7 54 74.1
Lsat_1_v5_gn_8_109000 Lactuca sativa HOM05D004789 ORTHO05D006078 3.9e-12 74.7 41 87.8
Psat3g102920 Pisum sativum HOM05D004789 ORTHO05D006078 3.9e-12 74.7 54 72.2
Potri.019G054000 Populus trichocarpa HOM05D004789 ORTHO05D006078 3.9e-12 74.7 56 71.4
Sabra19G0063100 Salix brachista HOM05D004789 ORTHO05D006078 3.9e-12 74.7 56 71.4
SGA_v2.0_scaffold14G07118 Striga asiatica HOM05D004789 ORTHO05D006078 3.9e-12 74.7 41 90.2
Thecc.05G194100 Theobroma cacao HOM05D004789 ORTHO05D006078 3.9e-12 74.7 56 71.4
Gohir.A08G226100 Gossypium hirsutum HOM05D004789 ORTHO05D006078 5.1e-12 74.3 56 69.6
Gorai.004G263000 Gossypium raimondii HOM05D004789 ORTHO05D006078 5.1e-12 74.3 56 69.6
vmacro19979 Vaccinium macrocarpon HOM05D004789 ORTHO05D006078 5.1e-12 74.3 54 72.2
Haze_04568 Corylus avellana HOM05D004789 ORTHO05D006078 6.6e-12 73.9 41 87.8
CANSAT54G2477 Cannabis sativa HOM05D004789 ORTHO05D006078 8.7e-12 73.6 54 74.1
CiPaw.07G081200 Carya illinoinensis HOM05D004789 ORTHO05D006078 8.7e-12 73.6 54 72.2
Cc09_g03720 Coffea canephora HOM05D004789 ORTHO05D006078 8.7e-12 73.6 54 70.4
COL.COLO4_38035 Corchorus olitorius HOM05D004789 ORTHO05D006078 8.7e-12 73.6 56 69.6
Gohir.D08G246500 Gossypium hirsutum HOM05D004789 ORTHO05D006078 8.7e-12 73.6 56 69.6
SGA_v2.0_scaffold11G05812 Striga asiatica HOM05D004789 ORTHO05D006078 8.7e-12 73.6 54 72.2
Aa31csc271G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 1.1e-11 73.2 56 69.6
THA.LOC104801872 Tarenaya hassleriana HOM05D004789 ORTHO05D006078 1.1e-11 73.2 56 67.9
Ca_07992_v3 Cicer arietinum L. HOM05D004789 ORTHO05D006078 1.5e-11 72.8 54 68.5
Medtr7g080117 Medicago truncatula HOM05D004789 ORTHO05D006078 1.5e-11 72.8 54 68.5
Sc16g0010430 Simmondsia chinensis HOM05D004789 ORTHO05D006078 1.5e-11 72.8 54 70.4
TPR.G10693 Trifolium pratense HOM05D004789 ORTHO05D006078 1.5e-11 72.8 54 68.5
Glyma.09G249800 Glycine max HOM05D004789 ORTHO05D006078 1.9e-11 72.4 54 70.4
Sp5g14500 Schrenkiella parvula HOM05D004789 ORTHO05D006078 1.9e-11 72.4 56 69.6
unitig_0.g1013 Utricularia gibba HOM05D004789 ORTHO05D006078 1.9e-11 72.4 54 72.2
Aa31sc348G30 Aethionema arabicum HOM05D004789 ORTHO05D006078 2.5e-11 72.0 55 70.9
Aa31sc60G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 2.5e-11 72.0 53 73.6
AL5G26580 Arabidopsis lyrata HOM05D004789 ORTHO05D006078 2.5e-11 72.0 56 69.6
AT3G47390 Arabidopsis thaliana HOM05D004789 ORTHO05D006078 2.5e-11 72.0 56 69.6
BcaB01g00932 Brassica carinata HOM05D004789 ORTHO05D006078 2.5e-11 72.0 56 69.6
BcaC01g01832 Brassica carinata HOM05D004789 ORTHO05D006078 2.5e-11 72.0 56 69.6
A06p20290 Brassica napus HOM05D004789 ORTHO05D006078 2.5e-11 72.0 56 69.6
BraA06t25110Z Brassica rapa HOM05D004789 ORTHO05D006078 2.5e-11 72.0 56 69.6
Ciclev10011346m.g Citrus clementina HOM05D004789 ORTHO05D006078 2.5e-11 72.0 56 67.9
TAR626G0377 Trochodendron aralioides HOM05D004789 ORTHO05D006078 2.5e-11 72.0 41 85.4
C03p71470 Brassica napus HOM05D004789 ORTHO05D006078 3.3e-11 71.6 57 68.4
BolC3t19438H Brassica oleracea HOM05D004789 ORTHO05D006078 3.3e-11 71.6 57 68.4
MELO3C010048.2 Cucumis melo HOM05D004789 ORTHO05D006078 3.3e-11 71.6 41 87.8
CsaV3_1G044470 Cucumis sativus L. HOM05D004789 ORTHO05D006078 3.3e-11 71.6 41 85.4
Migut.F02116 Erythranthe guttata HOM05D004789 ORTHO05D006078 3.3e-11 71.6 56 73.2
PGR119G2005 Punica granatum HOM05D004789 ORTHO05D006078 3.3e-11 71.6 54 70.4
Carub.0005s1348 Capsella rubella HOM05D004789 ORTHO05D006078 4.3e-11 71.2 56 69.6
Sed0000944 Sechium edule HOM05D004789 ORTHO05D006078 4.3e-11 71.2 56 73.2
CARHR156030 Cardamine hirsuta HOM05D004789 ORTHO05D006078 7.3e-11 70.5 56 66.1
MELO3C010050.2 Cucumis melo HOM05D004789 ORTHO05D006078 7.3e-11 70.5 40 87.5
Thhalv10010225m.g Eutrema salsugineum HOM05D004789 ORTHO05D006078 7.3e-11 70.5 56 67.9
Lj1g0000623 Lotus japonicus HOM05D004789 ORTHO05D006078 7.3e-11 70.5 56 69.6
Manes.12G005100 Manihot esculenta HOM05D004789 ORTHO05D006078 7.3e-11 70.5 54 68.5
Peaxi162Scf00048g00311 Petunia axillaris HOM05D004789 ORTHO05D006078 9.6e-11 70.1 49 77.6
GSVIVG01019077001 Vitis vinifera HOM05D004789 ORTHO05D006078 9.6e-11 70.1 56 67.9
Sed0025011 Sechium edule HOM05D004789 ORTHO05D006078 1.3e-10 69.7 56 69.6
ClCG03G010600 Citrullus lanatus HOM05D004789 ORTHO05D006078 1.6e-10 69.3 56 69.6
Duzib106G1853 Durio zibethinus HOM05D004789 ORTHO05D006078 1.6e-10 69.3 56 64.3
AUR62006648 Chenopodium quinoa HOM05D004789 ORTHO05D006078 2.1e-10 68.9 41 82.9
PSO675G5907 Papaver somniferum HOM05D004789 ORTHO05D006078 2.1e-10 68.9 54 66.7
SalBow1G3031 Salvia bowleyana HOM05D004789 ORTHO05D006078 2.1e-10 68.9 54 72.2
Ah.06g195430 Amaranthus hybridus HOM05D004789 ORTHO05D006078 2.8e-10 68.6 56 66.1
AUR62000303 Chenopodium quinoa HOM05D004789 ORTHO05D006078 2.8e-10 68.6 54 68.5
PGR083G2717 Punica granatum HOM05D004789 ORTHO05D006078 3.6e-10 68.2 56 67.9
PGR092G0005 Punica granatum HOM05D004789 ORTHO05D006078 3.6e-10 68.2 56 67.9
Hund21904 Selenicereus undatus HOM05D004789 ORTHO05D006078 3.6e-10 68.2 41 82.9
Solyc01g094230.4 Solanum lycopersicum HOM05D004789 ORTHO05D390785 3.6e-10 68.2 41 80.5
EL10Ac4g09992 Beta vulgaris HOM05D004789 ORTHO05D006078 6.2e-10 67.4 54 68.5
CDE05G3244 Ceratophyllum demersum HOM05D004789 ORTHO05D006078 6.2e-10 67.4 56 64.3
Ah.01g017460 Amaranthus hybridus HOM05D004789 ORTHO05D006078 2.4e-09 65.5 41 75.6
Aqoxy2G01476 Aquilegia oxysepala HOM05D004789 ORTHO05D006078 3.1e-09 65.1 56 64.3
Os02g0473000 Oryza sativa ssp. japonica HOM05D004789 ORTHO05D006078 3.1e-09 65.1 47 68.1
MBI11_g05799_MAGBIO Magnolia biondii HOM05D004789 ORTHO05D006078 5.3e-09 64.3 56 60.7
HPP92_008120 Vanilla planifolia HOM05D004789 ORTHO05D006078 5.3e-09 64.3 41 73.2
Nn1g09737 Nelumbo nucifera HOM05D004789 ORTHO05D006078 6.9e-09 63.9 38 81.6
SMO141G0244 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 6.9e-09 63.9 56 64.3
SHI13715 Sapria himalayana HOM05D004789 ORTHO05D006078 9.0e-09 63.5 56 58.9
AagrBONN_evm.TU.Sc2ySwM_117.447 Anthoceros agrestis HOM05D004789 ORTHO05D006078 1.2e-08 63.2 56 64.3
Hund07352 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.2e-08 63.2 54 61.1
Zm00001eb240960 Zea mays HOM05D004789 ORTHO05D006078 1.2e-08 63.2 47 68.1
Mapoly0151s0033 Marchantia polymorpha HOM05D004789 ORTHO05D006078 2.6e-08 62.0 55 65.5
Pp3c21_670 Physcomitrium patens HOM05D004789 ORTHO05D006078 2.6e-08 62.0 41 73.2
Pp3c9_9570 Physcomitrium patens HOM05D004789 ORTHO05D006078 2.6e-08 62.0 55 60.0
SEGI_15354 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 9.9e-08 60.1 41 70.7
PGSC0003DMG400006020 Solanum tuberosum HOM05D000552 ORTHO05D000469 9.9e-08 60.1 68 54.4
Pp3c19_9150 Physcomitrium patens HOM05D004789 ORTHO05D006078 1.3e-07 59.7 54 59.3
ATR0661G474 Amborella trichopoda HOM05D004789 ORTHO05D006078 3.8e-07 58.2 56 57.1
ATR0804G049 Amborella trichopoda HOM05D004789 ORTHO05D006078 3.8e-07 58.2 41 70.7
Cre17.g728950 Chlamydomonas reinhardtii HOM05D004789 ORTHO05D006078 3.8e-07 58.2 56 60.7
CBR_g21226 Chara braunii HOM05D004789 ORTHO05D006078 1.1e-06 56.6 55 56.4
SEGI_29409 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 1.1e-06 56.6 56 55.4
Pp3c15_7710 Physcomitrium patens HOM05D004789 ORTHO05D006078 1.9e-06 55.8 54 53.7
SMO145G0191 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 4.2e-06 54.7 56 58.9


User provided reference genes

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