Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 2.4e-273 944.9 472 100.0
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 7.0e-249 863.6 443 96.6
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 7.8e-224 780.4 443 87.4
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 2.1e-192 676.0 455 76.3
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 5.1e-191 671.4 420 80.0
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 4.2e-177 625.2 443 74.3
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 8.2e-157 557.8 432 63.4
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 2.4e-156 556.2 419 64.4
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 1.4e-151 540.4 434 62.4
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 1.4e-151 540.4 423 63.4
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 3.3e-150 535.8 454 61.5
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 3.1e-148 529.3 512 54.5
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 5.0e-146 521.9 473 57.9
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 1.4e-143 513.8 421 59.6
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 2.6e-142 509.6 423 58.6
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 5.0e-138 495.4 436 58.9
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 6.1e-136 488.4 414 56.8
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 1.4e-135 487.3 413 57.1
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 1.4e-135 487.3 427 55.7
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 4.0e-135 485.7 422 58.3
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 1.2e-134 484.2 461 54.0
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 1.5e-134 483.8 434 56.7
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.4e-134 482.6 449 53.2
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 7.5e-134 481.5 416 56.5
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 2.8e-133 479.6 420 56.9
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 1.1e-132 477.6 423 55.8
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.1e-132 476.1 448 52.9
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 5.4e-132 475.3 441 54.4
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 1.2e-131 474.2 415 56.9
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 5.0e-130 468.8 428 54.9
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 1.1e-129 467.6 408 54.9
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 2.8e-128 463.0 419 52.5
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 4.7e-128 462.2 417 56.8
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 4.7e-128 462.2 426 55.6
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 8.0e-128 461.5 437 53.1
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 1.4e-127 460.7 413 54.5
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 1.4e-127 460.7 420 55.7
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 1.4e-127 460.7 410 55.1
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 2.6e-126 456.4 416 54.3
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 3.4e-126 456.1 427 54.1
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 9.8e-126 454.5 416 54.1
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 2.4e-124 449.9 380 57.9
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 4.1e-124 449.1 434 52.3
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 9.2e-124 448.0 434 52.1
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 9.2e-124 448.0 427 52.5
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 2.0e-123 446.8 434 51.8
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 3.5e-123 446.0 421 53.0
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 5.9e-123 445.3 433 52.2
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 1.3e-122 444.1 430 52.6
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 1.3e-122 444.1 438 52.1
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 2.3e-122 443.4 438 51.6
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 5.0e-122 442.2 426 51.4
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 4.7e-120 435.6 451 50.1
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 1.4e-119 434.1 449 49.2
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 4.0e-119 432.6 434 50.7
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 5.2e-119 432.2 446 50.4
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 1.2e-118 431.0 423 51.8
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 3.4e-118 429.5 432 50.2
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 2.9e-117 426.4 448 49.3
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 8.3e-117 424.9 430 51.4
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 8.3e-117 424.9 437 49.4
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 7.0e-116 421.8 419 51.6
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 1.6e-115 420.6 415 51.6
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 1.6e-115 420.6 433 48.7
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 3.5e-115 419.5 483 47.2
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 6.0e-115 418.7 432 50.2
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 2.3e-114 416.8 414 51.4
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 2.5e-113 413.3 451 47.0
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 7.3e-113 411.8 429 49.4
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 9.5e-113 411.4 313 65.5
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 2.1e-112 410.2 436 49.5
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 2.1e-112 410.2 417 50.8
Atru.chr11.2515 Acer truncatum HOM05D002214 ORTHO05D007367 4.7e-112 409.1 431 49.4
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 8.9e-111 404.8 309 65.7
Gohir.D08G163300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 3.4e-110 402.9 314 60.2
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 9.8e-110 401.4 428 48.1
FvH4_7g01770 Fragaria vesca HOM05D002214 ORTHO05D007367 1.6e-107 394.0 313 60.1
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 5.6e-105 385.6 414 45.9
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 2.1e-104 383.6 415 47.2
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 3.6e-104 382.9 416 48.6
Ah.16g100650 Amaranthus hybridus HOM05D002214 ORTHO05D007367 8.1e-104 381.7 343 54.8
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 4.0e-103 379.4 410 50.5
ClCG09G004430 Citrullus lanatus HOM05D002214 ORTHO05D007367 7.5e-102 375.2 370 51.9
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 1.3e-98 364.4 429 46.9
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 1.7e-93 347.4 422 45.3
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 6.4e-93 345.5 351 51.3
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 9.2e-92 341.7 313 58.1
MELO3C023585.2 Cucumis melo HOM05D002214 ORTHO05D007367 6.4e-77 292.4 436 41.7
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 1.9e-76 290.8 283 52.3
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 2.7e-75 287.0 249 55.4
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.9e-73 280.8 464 42.2
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 4.3e-73 279.6 464 42.0
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 2.8e-72 276.9 421 38.5
FAN24G2408 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.0e-71 273.1 437 41.4
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.5e-68 263.8 462 40.5
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.5e-65 254.6 300 44.7
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 5.6e-65 252.7 419 37.2
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 5.6e-65 252.7 419 37.2
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.4e-62 243.4 439 39.9
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.4e-60 238.0 416 39.7
Aa31LG10G14890 Aethionema arabicum HOM05D002214 ORTHO05D007367 1.4e-55 221.5 234 47.0
Cpa.g.sc125.50 Carica papaya HOM05D002214 ORTHO05D007367 1.7e-53 214.5 200 54.5
QL04p010120 Quercus lobata HOM05D002214 ORTHO05D007367 8.5e-53 212.2 208 51.4
Hma1.2p1_0685F.1_g203270 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 3.2e-52 210.3 153 66.0
RcHm_v2.0_Chr6g0283161 Rosa chinensis HOM05D002214 ORTHO05D007367 4.6e-51 206.5 329 44.1
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 7.9e-51 205.7 448 30.8
Lj9A641T67 Lonicera japonica HOM05D002214 ORTHO05D007367 1.5e-49 201.4 285 40.0
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 7.7e-46 189.1 228 43.9
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 1.9e-44 184.5 340 35.0
MD07G1016900 Malus domestica HOM05D002214 ORTHO05D007367 9.4e-44 182.2 226 45.6
CDE04G0429 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 2.7e-43 180.6 192 49.0
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 2.8e-40 170.6 424 26.7
FvH4_2g17910 Fragaria vesca HOM05D002214 ORTHO05D007367 7.0e-39 166.0 231 43.3
FAN24G3278 Fragaria x ananassa HOM05D002214 ORTHO05D007367 7.0e-39 166.0 231 43.3
Hund16633 Selenicereus undatus HOM05D002214 ORTHO05D007367 9.1e-39 165.6 154 53.2
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 3.9e-34 150.2 159 47.2
FAN06G4994 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.3e-32 145.2 137 55.5
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 2.0e-30 137.9 140 47.1
Oeu016638.1 Olea europaea HOM05D002214 ORTHO05D007367 1.5e-28 131.7 104 62.5
SMO137G0282 Selaginella moellendorffii HOM05D002214 ORTHO05D007367 4.2e-28 130.2 351 27.9
SEGI_07097 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 1.2e-27 128.6 135 45.2
CBR_g46897 Chara braunii HOM05D002214 ORTHO05D007367 6.1e-27 126.3 267 31.1
Aa31LG10G14900 Aethionema arabicum HOM05D002214 ORTHO05D007367 1.4e-26 125.2 119 54.6
Mapoly0009s0234 Marchantia polymorpha HOM05D002214 ORTHO05D007367 6.8e-26 122.9 290 29.7
Thecc.01G405700 Theobroma cacao HOM05D002214 ORTHO05D007367 4.4e-25 120.2 99 56.6
Thecc.01G405800 Theobroma cacao HOM05D002214 ORTHO05D007367 1.3e-24 118.6 82 67.1
Hma1.2p1_0685F.1_g203250 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 1.5e-20 105.1 117 47.9
Duzib133G0745 Durio zibethinus HOM05D002214 ORTHO05D007367 1.2e-11 75.5 67 46.3
Lj9C641T18 Lonicera japonica HOM05D002214 ORTHO05D007367 3.6e-11 73.9 96 45.8
FAN24G0587 Fragaria x ananassa HOM05D002214 ORTHO05D045595 1.8e-07 61.6 87 46.0
FAN27G0866 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.8e-07 61.6 76 47.4
FAN27G0150 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.7e-06 57.8 108 37.0
Thhalv10015606m.g Eutrema salsugineum HOM05D000684 ORTHO05D008211 7.8e-06 56.2 210 27.6


User provided reference genes

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