Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g087360.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 3.9e-96 354.8 174 100.0
Sopen01g034440 Solanum pennellii HOM05D003531 ORTHO05D004354 4.3e-87 324.7 160 98.1
Sopen01g034370 Solanum pennellii HOM05D003531 ORTHO05D004354 9.4e-50 200.7 283 45.9
Solyc01g087430.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 3.6e-49 198.7 283 45.6
CAN.G219.38 Capsicum annuum HOM05D003531 ORTHO05D004354 2.6e-47 192.6 286 45.1
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 2.6e-47 192.6 279 44.1
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 7.4e-47 191.0 279 43.7
Peaxi162Scf00953g00513 Petunia axillaris HOM05D003531 ORTHO05D004354 6.3e-46 188.0 282 43.3
Solyc01g087400.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.0e-43 180.6 306 39.9
Sopen01g034360 Solanum pennellii HOM05D003531 ORTHO05D004354 1.7e-43 179.9 283 41.7
Sopen01g034460 Solanum pennellii HOM05D003531 ORTHO05D004354 2.7e-41 172.6 309 37.9
PGSC0003DMG400006794 Solanum tuberosum HOM05D003531 ORTHO05D004354 4.1e-37 158.7 239 41.8
Sopen01g034350 Solanum pennellii HOM05D003531 ORTHO05D004354 9.1e-37 157.5 312 38.1
Solyc01g087320.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.7e-35 153.3 237 43.0
Solyc01g087420.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.3e-30 137.1 255 40.0
Cc02_g28130 Coffea canephora HOM05D003531 ORTHO05D004354 2.5e-26 122.9 87 63.2
Migut.N01607 Erythranthe guttata HOM05D003531 ORTHO05D004354 5.5e-26 121.7 96 62.5
Dinv09345 Davidia involucrata HOM05D003531 ORTHO05D004354 1.6e-25 120.2 86 65.1
Dinv43430 Davidia involucrata HOM05D003531 ORTHO05D004354 2.8e-25 119.4 99 57.6
PGR031G1295 Punica granatum HOM05D003531 ORTHO05D004354 2.3e-24 116.3 99 54.5
Actinidia20660 Actinidia chinensis HOM05D003531 ORTHO05D004354 3.0e-24 115.9 99 57.6
Hma1.2p1_0495F.1_g165700 Hydrangea macrophylla HOM05D003531 ORTHO05D004354 4.0e-24 115.5 86 62.8
MSTRG.5029 Avicennia marina HOM05D003531 ORTHO05D004354 5.2e-24 115.2 87 64.4
vmacro21192 Vaccinium macrocarpon HOM05D003531 ORTHO05D004354 8.9e-24 114.4 77 67.5
CSS0044266 Camellia sinensis var. sinensis HOM05D003531 ORTHO05D004354 2.0e-23 113.2 163 43.6
FvH4_7g01200 Fragaria vesca HOM05D003531 ORTHO05D004354 2.6e-23 112.8 166 42.8
FAN06G4268 Fragaria x ananassa HOM05D003531 ORTHO05D004354 2.6e-23 112.8 166 42.8
Oeu063180.2 Olea europaea HOM05D003531 ORTHO05D004354 9.8e-23 110.9 77 62.3
Oeu048992.1 Olea europaea HOM05D003531 ORTHO05D004354 1.3e-22 110.5 77 63.6
Rhsim01G0128500 Rhododendron simsii HOM05D003531 ORTHO05D004354 1.7e-22 110.2 99 55.6
Hund19803 Selenicereus undatus HOM05D003531 ORTHO05D004354 2.2e-22 109.8 85 55.3
FAN10G4005 Fragaria x ananassa HOM05D003531 ORTHO05D004354 3.7e-22 109.0 167 42.5
Lj9C634G4 Lonicera japonica HOM05D003531 ORTHO05D004354 3.7e-22 109.0 77 66.2
FAN01G0774 Fragaria x ananassa HOM05D003531 ORTHO05D004354 4.9e-22 108.6 167 42.5
CANSAT80G0550 Cannabis sativa HOM05D003531 ORTHO05D004354 6.3e-22 108.2 85 56.5
FAN03G2678 Fragaria x ananassa HOM05D003531 ORTHO05D004354 8.3e-22 107.8 167 40.7
RcHm_v2.0_Chr6g0268071 Rosa chinensis HOM05D003531 ORTHO05D004354 8.3e-22 107.8 167 40.7
Eucgr.G03370 Eucalyptus grandis HOM05D003531 ORTHO05D004354 1.1e-21 107.5 99 49.5
RcHm_v2.0_Chr1g0316671 Rosa chinensis HOM05D003531 ORTHO05D004354 1.8e-21 106.7 167 40.1
HanXRQChr17g0563011 Helianthus annuus HOM05D003531 ORTHO05D004354 3.1e-21 105.9 98 49.0
QL04p008498 Quercus lobata HOM05D003531 ORTHO05D004354 3.1e-21 105.9 77 61.0
AUR62009395 Chenopodium quinoa HOM05D003531 ORTHO05D004354 4.1e-21 105.5 77 58.4
Cpa.g.sc125.24 Carica papaya HOM05D003531 ORTHO05D004354 9.2e-21 104.4 99 49.5
Gohir.A08G028300 Gossypium hirsutum HOM05D003531 ORTHO05D004354 1.6e-20 103.6 77 58.4
arahy.Tifrunner.gnm1.ann1.L35I2V Arachis hypogaea HOM05D003531 ORTHO05D004354 2.0e-20 103.2 85 58.8
arahy.Tifrunner.gnm1.ann1.V60VE2 Arachis hypogaea HOM05D003531 ORTHO05D004354 2.0e-20 103.2 85 58.8
Prupe.2G016600 Prunus persica HOM05D003531 ORTHO05D004354 2.0e-20 103.2 180 36.7
Sed0001045 Sechium edule HOM05D003531 ORTHO05D004354 2.0e-20 103.2 82 56.1
Sed0002980 Sechium edule HOM05D003531 ORTHO05D004354 2.0e-20 103.2 82 54.9
Phvul.011G010000 Phaseolus vulgaris HOM05D003531 ORTHO05D004354 2.7e-20 102.8 132 44.7
AUR62023077 Chenopodium quinoa HOM05D003531 ORTHO05D004354 3.5e-20 102.4 77 57.1
AUR62043479 Chenopodium quinoa HOM05D003531 ORTHO05D004354 3.5e-20 102.4 77 57.1
unitig_8.g3623 Utricularia gibba HOM05D003531 ORTHO05D004354 3.5e-20 102.4 142 45.8
Glyma.09G228600 Glycine max HOM05D003531 ORTHO05D004354 4.5e-20 102.1 85 56.5
Lsat_1_v5_gn_1_106281 Lactuca sativa HOM05D003531 ORTHO05D004354 4.5e-20 102.1 84 54.8
Hund21485 Selenicereus undatus HOM05D003531 ORTHO05D004354 4.5e-20 102.1 97 48.5
Sc11g0009100 Simmondsia chinensis HOM05D003531 ORTHO05D004354 4.5e-20 102.1 77 55.8
VMungo1127G0476 Vigna mungo HOM05D003531 ORTHO05D004354 4.5e-20 102.1 85 56.5
TAR369G0698 Trochodendron aralioides HOM05D003531 ORTHO05D004354 5.9e-20 101.7 77 57.1
SGA_v2.0_scaffold24G10668 Striga asiatica HOM05D003531 ORTHO05D004354 7.8e-20 101.3 157 43.3
Gohir.D08G039066 Gossypium hirsutum HOM05D003531 ORTHO05D004354 1.0e-19 100.9 77 57.1
Gorai.004G037700 Gossypium raimondii HOM05D003531 ORTHO05D004354 1.0e-19 100.9 77 57.1
MBI04_g44436_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 1.0e-19 100.9 89 51.7
Thecc.01G409300 Theobroma cacao HOM05D003531 ORTHO05D004354 1.0e-19 100.9 80 56.2
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 1.3e-19 100.5 71 59.2
Potri.001G264800 Populus trichocarpa HOM05D003531 ORTHO05D004354 1.3e-19 100.5 107 45.8
Sabra16G0162700 Salix brachista HOM05D003531 ORTHO05D004354 1.3e-19 100.5 107 45.8
Glyma.12G007900 Glycine max HOM05D003531 ORTHO05D004354 1.7e-19 100.1 85 55.3
MD02G1308700 Malus domestica HOM05D003531 ORTHO05D004354 1.7e-19 100.1 169 37.3
Nn7g36242 Nelumbo nucifera HOM05D003531 ORTHO05D004354 1.7e-19 100.1 88 52.3
COL.COLO4_04865 Corchorus olitorius HOM05D003531 ORTHO05D004354 2.3e-19 99.8 77 55.8
DCAR_029680 Daucus carota HOM05D003531 ORTHO05D004354 2.3e-19 99.8 98 46.9
Duzib138G1641 Durio zibethinus HOM05D003531 ORTHO05D004354 2.3e-19 99.8 98 45.9
MD07G1013100 Malus domestica HOM05D003531 ORTHO05D004354 2.3e-19 99.8 85 57.6
arahy.Tifrunner.gnm1.ann1.T4LWN5 Arachis hypogaea HOM05D003531 ORTHO05D004354 2.9e-19 99.4 77 55.8
unitig_699.g19826 Utricularia gibba HOM05D003531 ORTHO05D004354 2.9e-19 99.4 78 62.8
ClCG09G004050 Citrullus lanatus HOM05D003531 ORTHO05D004354 3.8e-19 99.0 80 55.0
Ciclev10030635m.g Citrus clementina HOM05D003531 ORTHO05D004354 3.8e-19 99.0 82 53.7
ECA234G4456 Erigeron canadensis HOM05D003531 ORTHO05D004354 6.6e-19 98.2 74 56.8
Gohir.D08G164500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 6.6e-19 98.2 90 51.1
Gorai.004G171500 Gossypium raimondii HOM05D003531 ORTHO05D004354 6.6e-19 98.2 90 51.1
Nn2g15298 Nelumbo nucifera HOM05D003531 ORTHO05D004354 6.6e-19 98.2 77 54.5
Sc23g0005960 Simmondsia chinensis HOM05D003531 ORTHO05D004354 6.6e-19 98.2 77 51.9
Gohir.A08G143500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 8.6e-19 97.8 90 51.1
Lsat_1_v5_gn_4_31500 Lactuca sativa HOM05D003531 ORTHO05D004354 1.1e-18 97.4 68 63.2
Lalb_Chr01g0000391 Lupinus albus HOM05D003531 ORTHO05D004354 1.5e-18 97.1 80 55.0
TAR633G0763 Trochodendron aralioides HOM05D003531 ORTHO05D004354 1.9e-18 96.7 131 40.5
ATR0332G091 Amborella trichopoda HOM05D003531 ORTHO05D004354 3.3e-18 95.9 158 38.6
arahy.Tifrunner.gnm1.ann1.2BQ2P0 Arachis hypogaea HOM05D003531 ORTHO05D004354 3.3e-18 95.9 161 38.5
CsaV3_7G030950 Cucumis sativus L. HOM05D003531 ORTHO05D004354 3.3e-18 95.9 74 60.8
TWI09G1532 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 3.3e-18 95.9 74 59.5
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 4.3e-18 95.5 90 48.9
HanXRQChr09g0251321 Helianthus annuus HOM05D003531 ORTHO05D004354 4.3e-18 95.5 73 58.9
TWI73G0346 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 4.3e-18 95.5 74 60.8
MELO3C023561.2 Cucumis melo HOM05D003531 ORTHO05D004354 9.5e-18 94.4 74 59.5
Lj3g0012564 Lotus japonicus HOM05D003531 ORTHO05D004354 9.5e-18 94.4 85 51.8
Lj3g0024838 Lotus japonicus HOM05D003531 ORTHO05D004354 9.5e-18 94.4 85 51.8
Manes.07G007000 Manihot esculenta HOM05D003531 ORTHO05D004354 9.5e-18 94.4 107 43.9
Potri.009G059700 Populus trichocarpa HOM05D003531 ORTHO05D004354 9.5e-18 94.4 176 35.8
Atru.chr11.2606 Acer truncatum HOM05D003531 ORTHO05D004354 1.2e-17 94.0 96 47.9
ECA248G0343 Erigeron canadensis HOM05D003531 ORTHO05D004354 1.2e-17 94.0 85 51.8
Manes.10G140700 Manihot esculenta HOM05D003531 ORTHO05D004354 1.2e-17 94.0 107 44.9
GSVIVG01032130001 Vitis vinifera HOM05D003531 ORTHO05D004354 1.6e-17 93.6 70 57.1
MBI02_g05670_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 3.6e-17 92.4 83 49.4
BcaNung06091 Brassica carinata HOM05D003531 ORTHO05D004354 4.7e-17 92.0 175 36.6
C08p27360 Brassica napus HOM05D003531 ORTHO05D004354 4.7e-17 92.0 175 36.6
PSO339G4096 Papaver somniferum HOM05D003531 ORTHO05D004354 4.7e-17 92.0 88 48.9
CDE05G0662 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 6.1e-17 91.7 90 46.7
Potri.009G059500 Populus trichocarpa HOM05D003531 ORTHO05D004354 6.1e-17 91.7 107 45.8
CiPaw.14G001000 Carya illinoinensis HOM05D003531 ORTHO05D004354 1.4e-16 90.5 157 36.3
Sabra09G0043900 Salix brachista HOM05D003531 ORTHO05D004354 1.4e-16 90.5 96 41.7
Aqoxy2G00174 Aquilegia oxysepala HOM05D003531 ORTHO05D004354 1.8e-16 90.1 77 53.2
Ca_19577_v3 Cicer arietinum L. HOM05D003531 ORTHO05D004354 1.8e-16 90.1 85 49.4
Aa31LG10G7170 Aethionema arabicum HOM05D003531 ORTHO05D004354 3.0e-16 89.4 79 51.9
PSO384G4091 Papaver somniferum HOM05D003531 ORTHO05D004354 3.0e-16 89.4 88 50.0
A09p45150 Brassica napus HOM05D003531 ORTHO05D004354 4.0e-16 89.0 175 36.0
BraA09t39978Z Brassica rapa HOM05D003531 ORTHO05D004354 4.0e-16 89.0 175 36.0
Lalb_Chr19g0140301 Lupinus albus HOM05D003531 ORTHO05D004354 4.0e-16 89.0 130 40.8
THA.LOC104827429 Tarenaya hassleriana HOM05D003531 ORTHO05D004354 4.0e-16 89.0 89 47.2
Psat0s1245g0040 Pisum sativum HOM05D003531 ORTHO05D004354 5.2e-16 88.6 85 50.6
BolC8t50353H Brassica oleracea HOM05D003531 ORTHO05D004354 6.8e-16 88.2 175 36.0
BcaB01g00446 Brassica carinata HOM05D003531 ORTHO05D004354 8.9e-16 87.8 132 40.2
Thhalv10010234m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 8.9e-16 87.8 133 40.6
CARHR161810 Cardamine hirsuta HOM05D003531 ORTHO05D004354 1.2e-15 87.4 134 40.3
TPR.G3645 Trifolium pratense HOM05D003531 ORTHO05D004354 1.2e-15 87.4 85 47.1
Carub.0005s1842 Capsella rubella HOM05D003531 ORTHO05D004354 3.4e-15 85.9 155 36.8
Sp5g10200 Schrenkiella parvula HOM05D003531 ORTHO05D004354 4.4e-15 85.5 78 51.3
CARHR082750 Cardamine hirsuta HOM05D003531 ORTHO05D004354 7.5e-15 84.7 101 45.5
AL5G32650 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 9.8e-15 84.3 152 37.5
HPP92_009589 Vanilla planifolia HOM05D003531 ORTHO05D004354 9.8e-15 84.3 75 49.3
AL3G19400 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 2.9e-14 82.8 97 43.3
Sp3g06930 Schrenkiella parvula HOM05D003531 ORTHO05D004354 4.9e-14 82.0 97 43.3
BcaC09g47972 Brassica carinata HOM05D003531 ORTHO05D004354 6.4e-14 81.6 97 42.3
Carub.0003s0760 Capsella rubella HOM05D003531 ORTHO05D004354 8.3e-14 81.3 90 44.4
Medtr4g037745 Medicago truncatula HOM05D003531 ORTHO05D004354 8.3e-14 81.3 77 50.6
AT3G08020 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 1.4e-13 80.5 88 47.7
BolC1t05508H Brassica oleracea HOM05D003531 ORTHO05D004354 1.4e-13 80.5 97 41.2
Thhalv10020119m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 1.4e-13 80.5 73 50.7
Haze_03181 Corylus avellana HOM05D003531 ORTHO05D004354 3.2e-13 79.3 62 53.2
Zm00001eb410840 Zea mays HOM05D003531 ORTHO05D004354 1.2e-12 77.4 75 45.3
A03p48680 Brassica napus HOM05D003531 ORTHO05D004354 2.0e-12 76.6 75 45.3
BraA01t04348Z Brassica rapa HOM05D003531 ORTHO05D004354 2.0e-12 76.6 97 41.2
Zm00001eb137800 Zea mays HOM05D003531 ORTHO05D004354 2.7e-12 76.3 72 45.8
BcaC06g33381 Brassica carinata HOM05D003531 ORTHO05D004354 3.5e-12 75.9 76 44.7
C07p46790 Brassica napus HOM05D003531 ORTHO05D004354 3.5e-12 75.9 76 44.7
BolC7t45196H Brassica oleracea HOM05D003531 ORTHO05D004354 3.5e-12 75.9 76 44.7
Lalb_Chr25g0282961 Lupinus albus HOM05D003531 ORTHO05D004354 4.6e-12 75.5 72 47.2
Mapoly0014s0141 Marchantia polymorpha HOM05D003531 ORTHO05D004354 1.3e-11 73.9 98 38.8
Os12g0527800 Oryza sativa ssp. japonica HOM05D003531 ORTHO05D004354 2.3e-11 73.2 92 38.0
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 3.0e-11 72.8 68 48.5
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 8.6e-11 71.2 104 39.4
Pp3c8_14490 Physcomitrium patens HOM05D003531 ORTHO05D004354 1.1e-10 70.9 66 51.5
BcaC06g33024 Brassica carinata HOM05D003531 ORTHO05D004354 2.0e-07 60.1 71 39.4
SMO203G0227 Selaginella moellendorffii HOM05D003531 ORTHO05D004354 6.4e-06 55.1 69 39.1


User provided reference genes

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