Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g087270.3 Solanum lycopersicum HOM05D000433 ORTHO05D000443 2.0e-45 185.3 87 100.0
Sopen01g034310 Solanum pennellii HOM05D000433 ORTHO05D000443 5.0e-36 154.1 71 97.2
Nitab4.5_0004290g0040 Nicotiana tabacum HOM05D000433 ORTHO05D000443 1.4e-25 119.4 84 70.2
vmacro04812 Vaccinium macrocarpon HOM05D000433 ORTHO05D000443 7.8e-21 103.6 67 68.7
CSS0012422 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D000443 3.3e-19 98.2 76 57.9
Rhsim07G0056200 Rhododendron simsii HOM05D000433 ORTHO05D000443 7.3e-19 97.1 82 62.2
Peaxi162Scf00953g00032 Petunia axillaris HOM05D000433 ORTHO05D000443 9.5e-19 96.7 73 68.5
EL10Ac2g04335 Beta vulgaris HOM05D000433 ORTHO05D000443 1.2e-18 96.3 87 54.0
Dinv43438 Davidia involucrata HOM05D000433 ORTHO05D000443 1.2e-18 96.3 66 69.7
Lsat_1_v5_gn_4_31520 Lactuca sativa HOM05D000433 ORTHO05D000443 2.1e-18 95.5 72 65.3
GSVIVG01032103001 Vitis vinifera HOM05D000433 ORTHO05D000443 2.1e-18 95.5 72 63.9
PSO541G1646 Papaver somniferum HOM05D000433 ORTHO05D000443 2.8e-18 95.1 80 53.8
Rhsim07G0189000 Rhododendron simsii HOM05D000433 ORTHO05D000443 2.8e-18 95.1 82 58.5
vmacro13671 Vaccinium macrocarpon HOM05D000433 ORTHO05D000443 6.2e-18 94.0 72 63.9
PSO675G1923 Papaver somniferum HOM05D000433 ORTHO05D000443 1.4e-17 92.8 80 52.5
TAR369G0420 Trochodendron aralioides HOM05D000433 ORTHO05D000443 2.4e-17 92.0 76 56.6
Ah.10g038810 Amaranthus hybridus HOM05D000433 ORTHO05D000443 5.2e-17 90.9 76 60.5
HanXRQChr17g0562991 Helianthus annuus HOM05D000433 ORTHO05D000443 1.5e-16 89.4 72 56.9
DCAR_003216 Daucus carota HOM05D000433 ORTHO05D000443 2.0e-16 89.0 76 59.2
Lj7C571T11 Lonicera japonica HOM05D000433 ORTHO05D000443 2.0e-16 89.0 72 61.1
Peaxi162Scf00953g00316 Petunia axillaris HOM05D000433 ORTHO05D000443 3.4e-16 88.2 129 41.1
Psat4g148800 Pisum sativum HOM05D000433 ORTHO05D000443 3.4e-16 88.2 70 58.6
Cc02_g28080 Coffea canephora HOM05D000433 ORTHO05D000443 4.4e-16 87.8 81 58.0
Medtr8g037310 Medicago truncatula HOM05D000433 ORTHO05D000443 4.4e-16 87.8 64 60.9
AUR62009389 Chenopodium quinoa HOM05D000433 ORTHO05D000443 5.8e-16 87.4 75 57.3
ECA234G3403 Erigeron canadensis HOM05D000433 ORTHO05D000443 5.8e-16 87.4 62 66.1
TAR623G0564 Trochodendron aralioides HOM05D000433 ORTHO05D000443 5.8e-16 87.4 80 52.5
Nitab4.5_0007165g0030 Nicotiana tabacum HOM05D000433 ORTHO05D000443 7.6e-16 87.0 80 62.5
Thecc.01G410200 Theobroma cacao HOM05D000433 ORTHO05D000443 7.6e-16 87.0 64 64.1
CANSAT80G2227 Cannabis sativa HOM05D000433 ORTHO05D000443 9.9e-16 86.7 82 53.7
Medtr8g037315 Medicago truncatula HOM05D000433 ORTHO05D000443 9.9e-16 86.7 72 55.6
Cpa.g.sc125.8 Carica papaya HOM05D000433 ORTHO05D000443 1.3e-15 86.3 80 52.5
TPR.G1878 Trifolium pratense HOM05D000433 ORTHO05D000443 1.3e-15 86.3 72 54.2
AUR62023071 Chenopodium quinoa HOM05D000433 ORTHO05D000443 2.2e-15 85.5 75 56.0
Hma1.2p1_0184F.1_g081180 Hydrangea macrophylla HOM05D000433 ORTHO05D000443 2.2e-15 85.5 68 58.8
Sc14g0005050 Simmondsia chinensis HOM05D000433 ORTHO05D000443 2.2e-15 85.5 78 56.4
TPR.G29608 Trifolium pratense HOM05D000433 ORTHO05D000443 2.2e-15 85.5 65 56.9
Lalb_Chr03g0034111 Lupinus albus HOM05D000433 ORTHO05D000443 2.9e-15 85.1 72 54.2
Oeu007851.1 Olea europaea HOM05D000433 ORTHO05D000443 3.8e-15 84.7 80 55.0
Peaxi162Scf00953g00218 Petunia axillaris HOM05D000433 ORTHO05D000443 4.9e-15 84.3 66 66.7
DCAR_022385 Daucus carota HOM05D000433 ORTHO05D000443 6.4e-15 84.0 80 51.2
Psat4g148840 Pisum sativum HOM05D000433 ORTHO05D000443 6.4e-15 84.0 70 55.7
Potri.009G060500 Populus trichocarpa HOM05D000433 ORTHO05D000443 6.4e-15 84.0 81 53.1
Glyma.13G202200 Glycine max HOM05D000433 ORTHO05D000443 8.4e-15 83.6 66 57.6
QL04p006161 Quercus lobata HOM05D000433 ORTHO05D000443 1.1e-14 83.2 65 60.0
QL04p006235 Quercus lobata HOM05D000433 ORTHO05D000443 1.1e-14 83.2 65 60.0
arahy.Tifrunner.gnm1.ann1.CX54DC Arachis hypogaea HOM05D000433 ORTHO05D000443 1.9e-14 82.4 70 51.4
COL.COLO4_04858 Corchorus olitorius HOM05D000433 ORTHO05D000443 1.9e-14 82.4 80 52.5
DCAR_022386 Daucus carota HOM05D000433 ORTHO05D000443 1.9e-14 82.4 83 55.4
Oeu007868.2 Olea europaea HOM05D000433 ORTHO05D000443 1.9e-14 82.4 70 58.6
AL5G46380 Arabidopsis lyrata HOM05D000433 ORTHO05D000443 2.4e-14 82.0 71 56.3
MSTRG.17028 Avicennia marina HOM05D000433 ORTHO05D000443 2.4e-14 82.0 66 60.6
AUR62044218 Chenopodium quinoa HOM05D000433 ORTHO05D000443 2.4e-14 82.0 74 55.4
Duzib268G0366 Durio zibethinus HOM05D000433 ORTHO05D000443 2.4e-14 82.0 85 52.9
arahy.Tifrunner.gnm1.ann1.GV0PL5 Arachis hypogaea HOM05D000433 ORTHO05D000443 3.2e-14 81.6 70 51.4
ClCG09G004110 Citrullus lanatus HOM05D000433 ORTHO05D000443 3.2e-14 81.6 62 61.3
MELO3C023555.2 Cucumis melo HOM05D000433 ORTHO05D000443 5.4e-14 80.9 62 61.3
Medtr8g037275 Medicago truncatula HOM05D000433 ORTHO05D000443 5.4e-14 80.9 64 56.2
Oeu049497.3 Olea europaea HOM05D000433 ORTHO05D000443 5.4e-14 80.9 62 64.5
CiPaw.13G005400 Carya illinoinensis HOM05D000433 ORTHO05D000443 7.1e-14 80.5 65 55.4
Medtr8g037290 Medicago truncatula HOM05D000433 ORTHO05D000443 9.2e-14 80.1 65 53.8
CiPaw.13G005500 Carya illinoinensis HOM05D000433 ORTHO05D000443 1.2e-13 79.7 62 56.5
Eucgr.G03374 Eucalyptus grandis HOM05D000433 ORTHO05D000443 1.2e-13 79.7 75 48.0
Glyma.12G236650 Glycine max HOM05D000433 ORTHO05D000443 1.2e-13 79.7 66 56.1
Sed0007420 Sechium edule HOM05D000433 ORTHO05D000443 1.2e-13 79.7 66 57.6
AT3G63520 Arabidopsis thaliana HOM05D000433 ORTHO05D000443 1.6e-13 79.3 71 52.1
Manes.10G141300 Manihot esculenta HOM05D000433 ORTHO05D000443 1.6e-13 79.3 84 47.6
CsaV3_7G031010 Cucumis sativus L. HOM05D000433 ORTHO05D000443 2.1e-13 79.0 62 59.7
Gohir.A08G054300 Gossypium hirsutum HOM05D000433 ORTHO05D000443 2.1e-13 79.0 66 54.5
Carub.0005s3013 Capsella rubella HOM05D000433 ORTHO05D000443 2.7e-13 78.6 71 50.7
Gohir.D08G064000 Gossypium hirsutum HOM05D000433 ORTHO05D000443 2.7e-13 78.6 66 56.1
Gorai.004G066100 Gossypium raimondii HOM05D000433 ORTHO05D000443 2.7e-13 78.6 66 56.1
Lj9C633G15 Lonicera japonica HOM05D000433 ORTHO05D000443 2.7e-13 78.6 68 58.8
Nitab4.5_0004290g0050 Nicotiana tabacum HOM05D000433 ORTHO05D000443 2.7e-13 78.6 76 55.3
Phvul.011G211200 Phaseolus vulgaris HOM05D000433 ORTHO05D000443 2.7e-13 78.6 66 56.1
PGR031G0340 Punica granatum HOM05D000433 ORTHO05D000443 2.7e-13 78.6 83 47.0
Ca_23892_v3 Cicer arietinum L. HOM05D000433 ORTHO05D000443 3.5e-13 78.2 71 50.7
DCAR_022390 Daucus carota HOM05D000433 ORTHO05D000443 4.6e-13 77.8 65 58.5
Lalb_Chr19g0132241 Lupinus albus HOM05D000433 ORTHO05D000443 4.6e-13 77.8 71 53.5
Sabra09G0044600 Salix brachista HOM05D000433 ORTHO05D000443 4.6e-13 77.8 76 53.9
SGA_v2.0_scaffold119G32738 Striga asiatica HOM05D000433 ORTHO05D000443 4.6e-13 77.8 80 51.2
ATR0332G045 Amborella trichopoda HOM05D000433 ORTHO05D000443 6.0e-13 77.4 76 48.7
ATR0605G288 Amborella trichopoda HOM05D000433 ORTHO05D000443 6.0e-13 77.4 66 54.5
CANSAT80G0704 Cannabis sativa HOM05D000433 ORTHO05D000443 6.0e-13 77.4 64 59.4
Oeu053257.1 Olea europaea HOM05D000433 ORTHO05D000443 6.0e-13 77.4 71 57.7
Lj3g0009657 Lotus japonicus HOM05D000433 ORTHO05D000443 7.8e-13 77.0 62 53.2
Potri.001G265400 Populus trichocarpa HOM05D000433 ORTHO05D000443 7.8e-13 77.0 81 49.4
Aa31LG10G17400 Aethionema arabicum HOM05D000433 ORTHO05D000443 1.0e-12 76.6 63 52.4
A09p55970 Brassica napus HOM05D000433 ORTHO05D000443 1.0e-12 76.6 70 51.4
BraA09t40999Z Brassica rapa HOM05D000433 ORTHO05D000443 1.0e-12 76.6 70 51.4
HanXRQChr16g0524471 Helianthus annuus HOM05D000433 ORTHO05D000443 1.0e-12 76.6 76 52.6
MD07G1011500 Malus domestica HOM05D000433 ORTHO05D000443 1.3e-12 76.3 80 43.8
BcaB08g35129 Brassica carinata HOM05D000433 ORTHO05D000443 1.7e-12 75.9 84 42.9
Cfa010772 Carpinus fangiana HOM05D000433 ORTHO05D000443 1.7e-12 75.9 66 51.5
FvH4_7g01130 Fragaria vesca HOM05D000433 ORTHO05D000443 1.7e-12 75.9 78 47.4
FAN01G0975 Fragaria x ananassa HOM05D000433 ORTHO05D000443 1.7e-12 75.9 64 56.2
FAN06G3200 Fragaria x ananassa HOM05D000433 ORTHO05D000443 1.7e-12 75.9 78 47.4
THA.LOC104823025 Tarenaya hassleriana HOM05D000433 ORTHO05D000443 1.7e-12 75.9 65 53.8
Migut.B01292 Erythranthe guttata HOM05D000433 ORTHO05D000443 2.3e-12 75.5 77 50.6
Thhalv10005877m.g Eutrema salsugineum HOM05D000433 ORTHO05D000443 2.3e-12 75.5 65 53.8
HanXRQChr16g0524461 Helianthus annuus HOM05D000433 ORTHO05D000443 2.3e-12 75.5 67 58.2
RcHm_v2.0_Chr1g0316311 Rosa chinensis HOM05D000433 ORTHO05D000443 2.3e-12 75.5 75 49.3
Sabra16G0163100 Salix brachista HOM05D000433 ORTHO05D000443 2.3e-12 75.5 76 52.6
TWI73G0222 Tripterygium wilfordii HOM05D000433 ORTHO05D000443 2.3e-12 75.5 75 44.0
PGR044G0170 Punica granatum HOM05D000433 ORTHO05D000443 3.0e-12 75.1 81 45.7
VMungo1127G1125 Vigna mungo HOM05D000433 ORTHO05D000443 3.0e-12 75.1 71 50.7
CANSAT80G1890 Cannabis sativa HOM05D000433 ORTHO05D000443 3.9e-12 74.7 64 50.0
Haze_03198 Corylus avellana HOM05D000433 ORTHO05D000443 3.9e-12 74.7 66 51.5
MSTRG.20579 Avicennia marina HOM05D000433 ORTHO05D000443 5.1e-12 74.3 66 59.1
A09p55980 Brassica napus HOM05D000433 ORTHO05D000443 5.1e-12 74.3 76 46.1
C08p38960 Brassica napus HOM05D000433 ORTHO05D000443 5.1e-12 74.3 76 46.1
BolC8t51469H Brassica oleracea HOM05D000433 ORTHO05D000443 5.1e-12 74.3 76 46.1
BraA09t41000Z Brassica rapa HOM05D000433 ORTHO05D000443 5.1e-12 74.3 76 46.1
CAN.G219.7 Capsicum annuum HOM05D000433 ORTHO05D000443 5.1e-12 74.3 80 51.2
FAN03G3380 Fragaria x ananassa HOM05D000433 ORTHO05D000443 5.1e-12 74.3 78 47.4
MD02G1309600 Malus domestica HOM05D000433 ORTHO05D000443 5.1e-12 74.3 62 54.8
BcaC07g40898 Brassica carinata HOM05D000433 ORTHO05D000443 6.6e-12 73.9 70 50.0
BcaC02g10356 Brassica carinata HOM05D000433 ORTHO05D000443 8.7e-12 73.6 63 54.0
C04p29820 Brassica napus HOM05D000433 ORTHO05D000443 8.7e-12 73.6 63 54.0
C08p38950 Brassica napus HOM05D000433 ORTHO05D000443 8.7e-12 73.6 70 48.6
BolC4t24515H Brassica oleracea HOM05D000433 ORTHO05D000443 8.7e-12 73.6 63 54.0
BolC8t51468H Brassica oleracea HOM05D000433 ORTHO05D000443 8.7e-12 73.6 70 48.6
FAN10G2567 Fragaria x ananassa HOM05D000433 ORTHO05D000443 8.7e-12 73.6 78 46.2
Prupe.2G014700 Prunus persica HOM05D000433 ORTHO05D000443 8.7e-12 73.6 75 46.7
PGR044G1035 Punica granatum HOM05D000433 ORTHO05D000443 8.7e-12 73.6 64 51.6
PGR058G0003 Punica granatum HOM05D000433 ORTHO05D000443 8.7e-12 73.6 64 51.6
QL04p006260 Quercus lobata HOM05D000433 ORTHO05D000443 8.7e-12 73.6 65 52.3
HPP92_023574 Vanilla planifolia HOM05D000433 ORTHO05D000443 8.7e-12 73.6 76 48.7
CAN.G219.9 Capsicum annuum HOM05D000433 ORTHO05D000443 1.1e-11 73.2 66 60.6
Haze_03200 Corylus avellana HOM05D000433 ORTHO05D000443 1.1e-11 73.2 65 49.2
Eucgr.G03362 Eucalyptus grandis HOM05D000433 ORTHO05D000443 1.1e-11 73.2 71 47.9
SalBow5G1887 Salvia bowleyana HOM05D000433 ORTHO05D000443 1.1e-11 73.2 69 50.7
Atru.chr11.2617 Acer truncatum HOM05D000433 ORTHO05D000443 1.5e-11 72.8 62 54.8
arahy.Tifrunner.gnm1.ann1.5NX4LW Arachis hypogaea HOM05D000433 ORTHO05D000443 1.5e-11 72.8 80 46.2
A04p00060 Brassica napus HOM05D000433 ORTHO05D000443 1.5e-11 72.8 65 52.3
Nn2g15315 Nelumbo nucifera HOM05D000433 ORTHO05D000443 1.5e-11 72.8 80 51.2
Hund14182 Selenicereus undatus HOM05D000433 ORTHO05D000443 1.5e-11 72.8 87 47.1
Ciclev10031039m.g Citrus clementina HOM05D000433 ORTHO05D000443 1.9e-11 72.4 76 48.7
QL04p006145 Quercus lobata HOM05D000009 ORTHO05D000008 1.9e-11 72.4 63 55.6
Atru.chr11.2618 Acer truncatum HOM05D000433 ORTHO05D000443 2.5e-11 72.0 62 54.8
BcaB02g08056 Brassica carinata HOM05D000433 ORTHO05D000443 2.5e-11 72.0 63 52.4
BraA04t15726Z Brassica rapa HOM05D000433 ORTHO05D000443 2.5e-11 72.0 63 52.4
CDE10G1079 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 3.3e-11 71.6 73 53.4
Nitab4.5_0002918g0020 Nicotiana tabacum HOM05D000433 ORTHO05D000443 3.3e-11 71.6 66 57.6
Sopen01g034300 Solanum pennellii HOM05D000433 ORTHO05D000443 3.3e-11 71.6 76 55.3
Sed0008090 Sechium edule HOM05D000433 ORTHO05D000443 4.3e-11 71.2 80 51.2
Aqoxy2G00193 Aquilegia oxysepala HOM05D000433 ORTHO05D000443 5.6e-11 70.9 78 39.7
arahy.Tifrunner.gnm1.ann1.8D7DUE Arachis hypogaea HOM05D000433 ORTHO05D000443 5.6e-11 70.9 80 45.0
PGR004G2078 Punica granatum HOM05D000433 ORTHO05D000443 5.6e-11 70.9 62 54.8
A09p56050 Brassica napus HOM05D000433 ORTHO05D000443 7.3e-11 70.5 69 47.8
PGR004G1132 Punica granatum HOM05D000433 ORTHO05D000443 7.3e-11 70.5 76 44.7
Sp5g00060 Schrenkiella parvula HOM05D000433 ORTHO05D000443 7.3e-11 70.5 71 50.7
CANSAT80G0472 Cannabis sativa HOM05D000433 ORTHO05D000443 9.6e-11 70.1 89 44.9
Lalb_Chr20g0107971 Lupinus albus HOM05D000433 ORTHO05D000443 1.6e-10 69.3 81 46.9
AUR62025811 Chenopodium quinoa HOM05D000433 ORTHO05D000443 2.1e-10 68.9 56 60.7
Haze_03196 Corylus avellana HOM05D000433 ORTHO05D000443 2.1e-10 68.9 60 51.7
Atru.chr11.2619 Acer truncatum HOM05D000433 ORTHO05D000443 2.8e-10 68.6 62 53.2
Atru.chr11.2621 Acer truncatum HOM05D000433 ORTHO05D000443 2.8e-10 68.6 64 53.1
Ciclev10031014m.g Citrus clementina HOM05D000433 ORTHO05D000443 2.8e-10 68.6 66 50.0
Atru.chr11.2620 Acer truncatum HOM05D000433 ORTHO05D000443 3.6e-10 68.2 62 53.2
Solyc01g087260.4 Solanum lycopersicum HOM05D000433 ORTHO05D000443 3.6e-10 68.2 83 50.6
PSO782G0017 Papaver somniferum HOM05D000433 ORTHO05D000443 6.2e-10 67.4 68 47.1
Carub.0002s1723 Capsella rubella HOM05D000433 ORTHO05D000443 8.1e-10 67.0 66 48.5
Potri.001G265600 Populus trichocarpa HOM05D000433 ORTHO05D000443 8.1e-10 67.0 77 50.6
PGR044G2631 Punica granatum HOM05D000433 ORTHO05D000443 2.4e-09 65.5 68 45.6
Potri.001G265900 Populus trichocarpa HOM05D000433 ORTHO05D000443 3.1e-09 65.1 77 50.6
PGR044G0030 Punica granatum HOM05D000433 ORTHO05D000443 3.1e-09 65.1 64 50.0
Zm00001eb402840 Zea mays HOM05D000433 ORTHO05D000443 3.1e-09 65.1 81 43.2
PSO782G5515 Papaver somniferum HOM05D000433 ORTHO05D000443 4.0e-09 64.7 70 50.0
CANSAT80G0689 Cannabis sativa HOM05D000433 ORTHO05D000443 1.2e-08 63.2 70 50.0
RcHm_v2.0_Chr1g0316181 Rosa chinensis HOM05D000433 ORTHO05D000443 3.4e-08 61.6 44 63.6
Haze_03197 Corylus avellana HOM05D000433 ORTHO05D000443 8.4e-07 57.0 53 45.3
GSVIVG01032110001 Vitis vinifera HOM05D000433 ORTHO05D000443 8.4e-07 57.0 36 69.4
Os12g0640600 Oryza sativa ssp. japonica HOM05D000433 ORTHO05D000443 1.1e-06 56.6 59 42.4


User provided reference genes

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