Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 5.1e-238 827.4 436 100.0
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 1.3e-233 812.8 436 97.9
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 9.4e-232 806.6 436 96.8
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 5.5e-216 754.2 437 90.4
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 2.9e-180 635.6 427 80.1
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 5.6e-160 568.2 445 69.2
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 9.6e-160 567.4 459 69.3
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 4.8e-159 565.1 438 73.1
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 7.8e-154 547.7 441 66.4
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 4.3e-152 542.0 440 66.4
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 5.6e-152 541.6 494 61.7
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 2.4e-150 536.2 438 66.4
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 5.3e-150 535.0 439 66.5
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.2e-149 533.9 446 65.9
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 7.6e-149 531.2 440 65.9
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 3.8e-148 528.9 438 65.5
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.1e-147 527.3 438 66.0
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 1.9e-147 526.6 438 66.0
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.9e-147 526.6 438 66.0
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 2.4e-147 526.2 447 64.7
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.1e-146 523.1 437 65.4
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 2.1e-146 523.1 437 65.0
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 2.1e-146 523.1 441 65.1
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.7e-146 522.7 428 66.8
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 7.9e-146 521.2 438 65.5
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 1.0e-145 520.8 453 64.2
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.0e-145 520.8 441 64.9
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.3e-145 520.4 441 63.7
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.0e-145 519.2 438 65.3
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 5.1e-145 518.5 438 65.1
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 8.7e-145 517.7 442 64.5
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 2.5e-144 516.2 471 60.9
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 3.3e-144 515.8 446 65.5
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 7.4e-144 514.6 446 65.2
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 1.3e-143 513.8 442 64.3
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.6e-143 513.5 443 66.4
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 3.7e-143 512.3 442 64.7
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 1.4e-142 510.4 437 65.2
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 6.9e-142 508.1 443 63.2
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 9.0e-142 507.7 444 63.5
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 2.0e-141 506.5 447 62.9
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 2.6e-141 506.1 436 64.4
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 1.0e-140 504.2 451 63.4
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 2.9e-140 502.7 447 62.6
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 3.8e-140 502.3 446 61.9
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 8.4e-140 501.1 443 63.4
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.1e-139 500.7 446 64.1
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.9e-139 500.0 440 62.7
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.9e-139 500.0 440 62.7
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 2.5e-139 499.6 457 61.3
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.2e-139 499.2 440 64.8
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 7.1e-139 498.0 443 63.9
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.2e-138 497.3 437 62.9
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.2e-138 497.3 444 61.5
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 1.6e-138 496.9 448 61.8
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 2.7e-138 496.1 439 62.2
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 3.5e-138 495.7 440 63.2
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 4.6e-138 495.4 443 62.5
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.3e-137 493.0 438 63.2
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 5.1e-137 491.9 450 62.4
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 1.1e-136 490.7 453 60.5
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 5.7e-136 488.4 439 62.4
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.6e-135 486.9 441 59.9
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 4.8e-135 485.3 457 60.0
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 6.2e-135 485.0 449 61.5
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 4.0e-134 482.3 451 59.4
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 5.3e-134 481.9 459 59.7
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 6.9e-134 481.5 451 62.3
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 9.0e-134 481.1 448 61.2
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 2.6e-133 479.6 443 59.4
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 5.8e-133 478.4 488 57.6
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 7.6e-133 478.0 440 61.8
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.0e-132 477.6 450 59.6
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 4.2e-131 472.2 444 59.7
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 5.5e-131 471.9 288 84.0
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 7.1e-131 471.5 446 59.9
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 7.1e-131 471.5 451 60.1
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 2.1e-130 469.9 453 58.3
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 4.6e-130 468.8 436 59.4
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.3e-129 467.2 460 59.6
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 2.5e-128 463.0 473 56.9
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 4.3e-128 462.2 496 54.6
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.6e-127 460.3 448 59.4
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 8.2e-127 458.0 438 59.6
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 3.1e-126 456.1 446 58.1
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.1e-126 455.7 432 58.8
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 2.0e-125 453.4 436 59.2
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 4.5e-125 452.2 451 59.6
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 5.9e-125 451.8 458 58.5
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 7.7e-125 451.4 464 56.5
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.3e-124 450.7 450 58.9
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 3.8e-124 449.1 451 59.4
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 9.4e-123 444.5 430 60.0
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.6e-122 443.7 449 56.1
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 2.7e-122 443.0 449 58.6
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 4.6e-122 442.2 441 57.4
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 1.4e-121 440.7 438 58.9
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 5.1e-121 438.7 438 57.5
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 8.8e-121 438.0 430 58.1
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 3.7e-119 432.6 438 58.7
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 5.3e-118 428.7 447 56.4
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 6.9e-118 428.3 448 56.5
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 2.2e-116 423.3 446 55.6
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 6.1e-114 415.2 449 53.5
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 1.7e-111 407.1 428 54.0
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.1e-110 404.4 441 56.5
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 2.6e-109 399.8 450 55.6
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 2.6e-109 399.8 375 61.6
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.0e-108 397.9 434 54.1
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.5e-107 393.3 439 52.8
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 1.1e-104 384.4 380 58.2
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 3.7e-103 379.4 484 47.7
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 3.7e-103 379.4 438 51.1
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.7e-98 363.2 386 53.1
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 1.0e-97 361.3 436 50.0
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 3.4e-96 356.3 312 62.2
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 3.7e-95 352.8 429 50.8
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 3.0e-89 333.2 433 49.4
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.7e-87 326.2 482 45.6
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 1.8e-86 323.9 517 44.5
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.7e-84 317.4 373 52.5
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.4e-81 307.8 308 60.4
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 4.9e-71 272.7 315 54.0
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 8.6e-68 261.9 169 75.1
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 8.1e-66 255.4 438 44.1
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.2e-64 251.5 438 44.1
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 3.9e-60 236.5 215 63.3
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 9.9e-56 221.9 137 76.6
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 1.6e-53 214.5 267 46.1
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 1.6e-53 214.5 267 46.1
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.0e-52 211.8 352 43.2
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.1e-49 201.8 338 42.3
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.6e-42 177.9 187 51.9
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 4.9e-39 166.4 321 41.1
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 1.4e-33 148.3 148 55.4
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.6e-32 144.1 91 73.6
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.7e-31 141.4 83 79.5
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.1e-30 138.7 173 47.4
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.1e-30 138.7 173 47.4
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 1.9e-30 137.9 183 48.1
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 5.5e-30 136.3 69 91.3
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 5.5e-30 136.3 74 83.8
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.6e-29 134.8 484 28.1
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.1e-27 128.6 264 40.5
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 1.6e-26 124.8 122 54.1
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 4.8e-26 123.2 95 64.2
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 1.2e-24 118.6 68 77.9
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 4.8e-18 96.7 125 48.8
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.8e-17 94.7 450 24.9
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 5.0e-15 86.7 94 58.5
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.5e-11 74.3 62 59.7
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 3.2e-06 57.4 128 36.7
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 5.5e-06 56.6 72 54.2
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 9.4e-06 55.8 66 40.9


User provided reference genes

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