Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 1.4e-204 716.1 361 100.0
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 6.8e-204 713.8 361 99.4
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 1.1e-193 679.9 395 88.6
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 4.6e-176 621.3 365 86.8
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 2.9e-170 602.1 362 85.6
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 1.6e-144 516.5 363 77.4
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 3.3e-142 508.8 362 75.7
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 8.8e-135 484.2 360 68.3
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 1.5e-134 483.4 371 67.4
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 3.7e-133 478.8 338 71.3
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 4.1e-132 475.3 365 67.4
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 5.9e-131 471.5 308 76.0
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 1.0e-130 470.7 305 76.1
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 2.9e-130 469.2 361 67.9
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 5.0e-130 468.4 366 66.4
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 6.5e-130 468.0 360 66.4
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 6.5e-130 468.0 366 66.4
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 8.5e-130 467.6 363 67.2
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 4.2e-129 465.3 361 67.0
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 7.2e-129 464.5 366 65.8
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 2.1e-128 463.0 360 66.7
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 2.1e-128 463.0 365 65.5
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 2.1e-128 463.0 362 66.0
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 2.1e-128 463.0 344 68.0
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 8.0e-128 461.1 356 67.4
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 8.0e-128 461.1 314 72.6
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 2.3e-127 459.5 368 66.0
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 2.3e-127 459.5 368 66.8
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 4.0e-127 458.8 374 65.2
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 2.6e-126 456.1 356 66.0
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 2.6e-126 456.1 359 65.2
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 2.6e-126 456.1 312 70.8
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 4.4e-126 455.3 369 65.9
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 5.7e-126 454.9 365 64.9
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 7.5e-126 454.5 365 64.9
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 7.5e-126 454.5 305 72.5
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 9.8e-126 454.1 313 70.9
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 1.3e-125 453.8 365 64.7
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 3.7e-125 452.2 302 74.8
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 1.1e-124 450.7 359 66.0
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 1.1e-124 450.7 359 65.7
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 1.1e-124 450.7 357 66.7
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 2.4e-124 449.5 345 65.8
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 7.0e-124 448.0 359 66.3
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 9.2e-124 447.6 359 64.6
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 3.5e-123 445.7 351 67.8
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 5.9e-123 444.9 306 71.9
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 7.7e-123 444.5 367 64.0
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 1.7e-122 443.4 363 64.2
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 2.3e-122 443.0 358 66.2
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 2.9e-122 442.6 360 62.8
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 3.8e-122 442.2 363 63.6
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 5.0e-122 441.8 360 66.4
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 6.6e-122 441.4 303 72.3
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 1.1e-121 440.7 361 66.2
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 1.9e-121 439.9 309 71.5
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 3.3e-121 439.1 359 64.9
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 5.6e-121 438.3 327 67.3
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 5.6e-121 438.3 289 75.4
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 1.6e-120 436.8 354 66.4
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 2.8e-120 436.0 318 68.6
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 3.6e-120 435.6 357 64.1
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 3.6e-120 435.6 357 62.7
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 3.6e-120 435.6 357 62.7
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 4.7e-120 435.3 307 69.4
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 6.1e-120 434.9 303 69.3
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 6.1e-120 434.9 308 68.2
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 6.1e-120 434.9 363 63.4
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 6.1e-120 434.9 311 69.8
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 2.3e-119 433.0 308 67.9
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 3.0e-119 432.6 388 58.5
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 4.0e-119 432.2 410 57.6
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 4.0e-119 432.2 325 65.5
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 8.9e-119 431.0 365 61.9
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 8.9e-119 431.0 317 67.8
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 5.7e-118 428.3 386 58.3
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 1.7e-117 426.8 361 62.9
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 3.7e-117 425.6 393 57.8
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 6.4e-117 424.9 355 62.3
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 6.4e-117 424.9 286 71.3
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 6.4e-117 424.9 345 65.8
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 9.2e-116 421.0 339 64.6
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 2.7e-115 419.5 318 67.6
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 3.5e-115 419.1 304 68.1
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 1.0e-114 417.5 288 71.9
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 2.1e-112 409.8 306 66.0
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 3.1e-111 406.0 304 66.1
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 4.0e-111 405.6 291 71.5
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 2.6e-110 402.9 248 76.6
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 4.9e-109 398.7 281 65.5
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 5.0e-106 388.7 322 60.9
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 3.3e-105 386.0 264 69.3
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 8.3e-101 371.3 299 67.2
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 3.9e-98 362.5 287 65.5
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 1.2e-96 357.5 244 70.9
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 1.0e-90 337.8 281 61.9
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 5.1e-90 335.5 300 57.7
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 1.5e-86 323.9 302 55.3
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 4.9e-85 318.9 305 50.8
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 8.4e-85 318.2 304 54.3
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 1.6e-83 313.9 320 54.4
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 7.6e-78 295.0 361 50.7
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 7.6e-78 295.0 342 52.0
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 5.4e-76 288.9 281 53.4
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 6.7e-74 282.0 325 48.6
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.2e-67 261.2 327 48.3
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 1.6e-67 260.8 210 65.2
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.9e-65 253.8 240 57.5
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 3.5e-59 233.0 210 60.0
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 3.5e-59 233.0 169 69.8
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 1.9e-52 210.7 208 58.7
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 6.1e-51 205.7 365 37.5
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 2.6e-46 190.3 343 35.6
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 1.3e-45 188.0 208 51.9
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 3.2e-44 183.3 198 53.0
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 1.5e-41 174.5 121 72.7
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 3.3e-41 173.3 183 53.0
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 4.7e-27 126.3 78 75.6
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 2.4e-15 87.4 59 69.5
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 7.2e-12 75.9 79 46.8
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 3.6e-11 73.6 51 78.4
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 4.7e-11 73.2 103 41.7
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 6.8e-10 69.3 74 52.7
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 6.8e-10 69.3 46 65.2
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 1.5e-09 68.2 98 39.8
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 1.4e-07 61.6 79 49.4
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 1.4e-07 61.6 51 68.6
Gorai.012G092500 Gossypium raimondii HOM05D006587 ORTHO05D008487 3.1e-07 60.5 47 59.6


User provided reference genes

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