Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g068360.4 Solanum lycopersicum HOM05D000940 ORTHO05D045096 5.4e-75 284.3 146 100.0
Sopen01g030320 Solanum pennellii HOM05D000940 ORTHO05D000782 5.3e-14 81.6 47 89.4
CAN.G106.26 Capsicum annuum HOM05D000940 ORTHO05D000782 1.6e-13 80.1 49 85.7
PGSC0003DMG401017953 Solanum tuberosum HOM05D000940 ORTHO05D000782 2.6e-13 79.3 47 85.1
CANSAT78G2163 Cannabis sativa HOM05D000940 ORTHO05D000782 1.4e-09 67.0 66 51.5
Nitab4.5_0028670g0010 Nicotiana tabacum HOM05D000940 ORTHO05D000782 5.2e-09 65.1 59 59.3
Glyma.01G043700 Glycine max HOM05D000940 ORTHO05D000782 1.5e-08 63.5 102 42.2
Dinv25057 Davidia involucrata HOM05D000940 ORTHO05D045096 2.0e-08 63.2 39 76.9
Glyma.02G019800 Glycine max HOM05D000940 ORTHO05D000782 2.0e-08 63.2 102 41.2
Lalb_Chr04g0256251 Lupinus albus HOM05D000940 ORTHO05D000782 3.3e-08 62.4 82 39.0
Nitab4.5_0001623g0040 Nicotiana tabacum HOM05D000940 ORTHO05D000782 5.7e-08 61.6 37 81.1
Nitab4.5_0004148g0020 Nicotiana tabacum HOM05D000940 ORTHO05D000782 7.5e-08 61.2 49 65.3
GSVIVG01029950001 Vitis vinifera HOM05D000940 ORTHO05D000782 7.5e-08 61.2 38 76.3
Phvul.002G089300 Phaseolus vulgaris HOM05D000940 ORTHO05D000782 9.7e-08 60.8 102 41.2
CAN.G128.139 Capsicum annuum HOM05D000940 ORTHO05D000782 1.3e-07 60.5 48 66.7
Nitab4.5_0007830g0010 Nicotiana tabacum HOM05D000940 ORTHO05D000782 2.2e-07 59.7 37 75.7
Peaxi162Scf00575g00047 Petunia axillaris HOM05D000940 ORTHO05D000782 2.2e-07 59.7 38 76.3
EL10Ac5g12875 Beta vulgaris HOM05D000940 ORTHO05D000782 2.8e-07 59.3 54 57.4
Duzib106G1382 Durio zibethinus HOM05D000940 ORTHO05D000782 2.8e-07 59.3 50 58.0
Peaxi162Scf00045g00143 Petunia axillaris HOM05D000940 ORTHO05D000782 2.8e-07 59.3 38 73.7
TPR.G17859 Trifolium pratense HOM05D000940 ORTHO05D000782 2.8e-07 59.3 46 65.2
Dinv04775 Davidia involucrata HOM05D000940 ORTHO05D000782 4.8e-07 58.5 71 45.1
Lj4g0011521 Lotus japonicus HOM05D000940 ORTHO05D000782 4.8e-07 58.5 85 43.5
Lj4C230G16 Lonicera japonica HOM05D000940 ORTHO05D000782 6.3e-07 58.2 38 73.7
vmacro07668 Vaccinium macrocarpon HOM05D000940 ORTHO05D000782 6.3e-07 58.2 48 62.5
CSS0020570 Camellia sinensis var. sinensis HOM05D000940 ORTHO05D000782 8.2e-07 57.8 38 71.1
Phvul.001G115100 Phaseolus vulgaris HOM05D000940 ORTHO05D000782 8.2e-07 57.8 35 77.1
VMungo1383G0227 Vigna mungo HOM05D000940 ORTHO05D000782 8.2e-07 57.8 35 77.1
BcaB02g06491 Brassica carinata HOM05D000940 ORTHO05D000782 1.1e-06 57.4 85 41.2
Duzib177G0475 Durio zibethinus HOM05D000940 ORTHO05D000782 1.1e-06 57.4 38 71.1
Gohir.A11G231000 Gossypium hirsutum HOM05D000940 ORTHO05D000782 1.1e-06 57.4 38 73.7
Medtr7g086420 Medicago truncatula HOM05D000940 ORTHO05D000782 1.1e-06 57.4 36 75.0
Ah.12g059780 Amaranthus hybridus HOM05D001400 ORTHO05D001795 1.4e-06 57.0 59 50.8
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.4e-06 57.0 45 62.2
HPP92_005180 Vanilla planifolia HOM05D000940 ORTHO05D000782 1.4e-06 57.0 82 41.5
arahy.Tifrunner.gnm1.ann1.NB21C6 Arachis hypogaea HOM05D000940 ORTHO05D000782 1.8e-06 56.6 46 58.7
arahy.Tifrunner.gnm1.ann1.QV5TSY Arachis hypogaea HOM05D000940 ORTHO05D000782 1.8e-06 56.6 46 58.7
MSTRG.19358 Avicennia marina HOM05D000940 ORTHO05D000782 1.8e-06 56.6 37 75.7
Nn2g14527 Nelumbo nucifera HOM05D000940 ORTHO05D000782 1.8e-06 56.6 38 76.3
Potri.019G039000 Populus trichocarpa HOM05D000940 ORTHO05D000782 1.8e-06 56.6 49 61.2
Rhsim03G0050600 Rhododendron simsii HOM05D000940 ORTHO05D000782 1.8e-06 56.6 49 55.1
Sed0007643 Sechium edule HOM05D000940 ORTHO05D000782 1.8e-06 56.6 38 71.1
CARHR077830 Cardamine hirsuta HOM05D000940 ORTHO05D000782 2.4e-06 56.2 51 54.9
Ca_08304_v3 Cicer arietinum L. HOM05D000940 ORTHO05D000782 2.4e-06 56.2 56 53.6
ClCG04G005510 Citrullus lanatus HOM05D000940 ORTHO05D000782 2.4e-06 56.2 38 71.1
MELO3C008838.2 Cucumis melo HOM05D000940 ORTHO05D000782 2.4e-06 56.2 49 59.2
Sp1g12760 Schrenkiella parvula HOM05D000940 ORTHO05D000782 2.4e-06 56.2 85 41.2
Aqoxy1G00529 Aquilegia oxysepala HOM05D000940 ORTHO05D000782 3.1e-06 55.8 48 60.4
Glyma.16G037500 Glycine max HOM05D000940 ORTHO05D000782 3.1e-06 55.8 35 74.3
Glyma.19G115800 Glycine max HOM05D000940 ORTHO05D000782 3.1e-06 55.8 35 74.3
TWI60G1256 Tripterygium wilfordii HOM05D000940 ORTHO05D000782 3.1e-06 55.8 52 53.8
Gohir.D11G242300 Gossypium hirsutum HOM05D000940 ORTHO05D000782 4.1e-06 55.5 37 73.0
Gorai.007G256600 Gossypium raimondii HOM05D000940 ORTHO05D000782 4.1e-06 55.5 37 73.0
Thecc.05G243700 Theobroma cacao HOM05D000940 ORTHO05D000782 4.1e-06 55.5 38 71.1
BraA05t23101Z Brassica rapa HOM05D000940 ORTHO05D000782 5.3e-06 55.1 47 59.6
FAN26G2940 Fragaria x ananassa HOM05D000940 ORTHO05D000782 5.3e-06 55.1 98 37.8
AT3G03770 Arabidopsis thaliana HOM05D000940 ORTHO05D000782 7.0e-06 54.7 51 52.9
Carub.0003s0293 Capsella rubella HOM05D000940 ORTHO05D000782 7.0e-06 54.7 51 52.9
Ca_25683_v3 Cicer arietinum L. HOM05D000940 ORTHO05D000782 7.0e-06 54.7 44 63.6
Sabra19G0049900 Salix brachista HOM05D000940 ORTHO05D000782 7.0e-06 54.7 49 59.2
C05p12210 Brassica napus HOM05D000940 ORTHO05D000782 9.1e-06 54.3 85 40.0
CARHR014830 Cardamine hirsuta HOM05D000940 ORTHO05D000782 9.1e-06 54.3 85 40.0
HanXRQChr13g0398951 Helianthus annuus HOM05D000940 ORTHO05D000782 9.1e-06 54.3 42 64.3
PSO339G1175 Papaver somniferum HOM05D000940 ORTHO05D000782 9.1e-06 54.3 49 55.1
Prupe.7G011100 Prunus persica HOM05D000940 ORTHO05D000782 9.1e-06 54.3 33 78.8
RcHm_v2.0_Chr3g0496251 Rosa chinensis HOM05D000940 ORTHO05D000782 9.1e-06 54.3 49 59.2
TAR623G0746 Trochodendron aralioides HOM05D000940 ORTHO05D000782 9.1e-06 54.3 38 68.4


User provided reference genes

Program Settings