Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 0.0e+00 1173.7 621 100.0
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 0.0e+00 1163.7 621 99.2
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 0.0e+00 1115.5 621 95.3
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 3.9e-292 1007.7 632 86.6
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.6e-288 995.7 633 85.5
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 3.5e-264 914.8 642 79.3
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 2.2e-242 842.4 510 86.5
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 2.6e-227 792.3 643 68.4
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 7.6e-219 764.2 639 66.0
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 4.2e-217 758.4 644 64.6
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 1.3e-215 753.4 613 66.1
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.3e-215 753.4 657 65.0
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 5.6e-214 748.0 639 64.8
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.4e-212 743.4 645 64.3
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 2.4e-212 742.7 627 64.4
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 2.9e-210 735.7 599 65.6
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 3.2e-209 732.3 653 62.9
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 1.6e-208 729.9 653 62.9
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 1.6e-208 729.9 640 62.7
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 1.6e-208 729.9 638 62.5
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.7e-208 729.2 652 63.2
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 2.7e-208 729.2 656 62.0
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 4.6e-208 728.4 554 69.3
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 4.6e-208 728.4 637 63.3
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.0e-207 727.2 654 61.2
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 3.0e-207 725.7 649 62.4
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 5.1e-207 724.9 647 62.6
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 4.3e-206 721.8 638 63.0
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 5.6e-206 721.5 636 61.5
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 5.6e-206 721.5 651 62.1
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.6e-205 719.9 655 61.7
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 2.1e-205 719.5 673 60.6
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 6.2e-205 718.0 638 62.5
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 6.2e-205 718.0 639 61.8
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 8.2e-205 717.6 673 60.5
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 1.4e-204 716.8 638 62.4
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.4e-204 716.8 673 60.5
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 3.1e-204 715.7 650 60.6
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 4.0e-204 715.3 638 61.9
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 9.0e-204 714.1 646 61.1
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 2.0e-203 713.0 643 62.4
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 2.6e-203 712.6 637 62.3
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 2.6e-203 712.6 657 61.9
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 8.4e-202 707.6 637 61.7
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 5.5e-201 704.9 649 59.8
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 5.5e-201 704.9 576 65.5
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 9.3e-201 704.1 641 61.9
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 2.7e-200 702.6 630 61.7
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 4.6e-200 701.8 653 59.7
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 6.0e-200 701.4 649 60.2
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 1.0e-199 700.7 684 58.5
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 2.3e-199 699.5 650 60.8
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 2.3e-199 699.5 639 61.0
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 8.7e-199 697.6 656 60.5
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 2.5e-198 696.0 636 60.5
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 4.3e-198 695.3 535 67.5
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 7.4e-198 694.5 641 60.5
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.6e-197 693.3 578 63.8
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.6e-197 693.3 647 62.0
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 6.3e-197 691.4 640 60.0
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.4e-196 690.3 672 58.0
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 5.3e-196 688.3 672 58.0
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.4e-195 685.6 674 57.9
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 3.8e-194 682.2 635 61.3
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 8.5e-194 681.0 622 60.1
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 4.2e-193 678.7 632 60.6
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 4.2e-193 678.7 641 61.6
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 1.4e-191 673.7 639 59.0
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 1.8e-191 673.3 554 63.2
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 5.1e-191 671.8 663 58.4
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 2.0e-190 669.8 646 57.6
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 3.3e-190 669.1 628 58.4
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 3.3e-190 669.1 650 57.4
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 4.3e-190 668.7 646 57.9
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 5.7e-190 668.3 648 57.6
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 9.7e-190 667.5 624 58.0
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 2.2e-189 666.4 646 57.4
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 3.1e-188 662.5 642 59.0
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 1.5e-187 660.2 642 58.9
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 4.5e-187 658.7 642 57.8
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 1.4e-185 653.7 622 57.2
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 6.1e-184 648.3 634 56.0
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 6.1e-184 648.3 622 58.2
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 1.8e-183 646.7 661 55.8
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 2.6e-182 642.9 616 57.8
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 1.4e-177 627.1 560 60.2
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 1.2e-176 624.0 600 62.3
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.6e-176 623.6 615 57.4
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.7e-176 622.9 650 54.9
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 1.1e-174 617.5 631 55.3
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.2e-173 613.2 605 58.3
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 6.3e-173 611.7 605 57.0
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 6.1e-168 595.1 625 55.2
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 7.5e-166 588.2 630 55.4
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 8.3e-165 584.7 603 54.9
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 2.0e-163 580.1 364 86.8
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.7e-160 569.7 584 58.0
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.4e-159 567.4 616 54.7
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 2.0e-155 553.5 634 53.2
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 1.0e-154 551.2 657 48.9
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 5.0e-154 548.9 657 50.8
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.9e-146 523.1 444 66.4
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 5.6e-137 492.3 565 48.1
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 2.6e-134 483.4 590 49.7
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 7.8e-131 471.9 645 45.9
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 2.4e-124 450.3 653 43.3
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 4.4e-118 429.5 632 46.2
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 6.6e-114 415.6 652 41.0
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 9.0e-103 378.6 532 45.5
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 6.0e-99 365.9 320 62.5
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 1.3e-98 364.8 643 36.5
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 1.0e-90 338.6 336 56.2
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 7.1e-84 315.8 247 66.4
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 9.3e-84 315.5 308 56.5
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.5e-81 308.1 413 44.6
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 7.4e-81 305.8 284 57.4
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 1.4e-71 275.0 373 44.5
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 1.3e-61 241.9 711 28.7
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 1.1e-57 228.8 595 30.3
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 2.4e-47 194.5 246 47.2
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.1e-47 194.1 194 58.8
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 5.4e-47 193.4 236 47.9
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 5.0e-45 186.8 616 27.3
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 7.2e-44 183.0 144 61.8
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 4.4e-41 173.7 233 45.9
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 8.3e-40 169.5 233 45.1
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 3.3e-36 157.5 177 49.7
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 1.2e-33 149.1 257 40.1
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.2e-30 139.0 174 50.6
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 7.8e-30 136.3 107 64.5
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 3.9e-29 134.0 99 67.7
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 9.5e-28 129.4 95 63.2
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 1.2e-27 129.0 571 23.5
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 1.5e-25 122.1 150 44.0
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 7.5e-25 119.8 83 66.3
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 1.4e-23 115.5 146 49.3
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 1.9e-23 115.2 350 29.4
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 5.8e-17 93.6 142 45.1
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 1.4e-15 89.0 77 63.6
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 1.2e-14 85.9 130 44.6
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 1.0e-13 82.8 108 49.1
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.7e-13 82.0 106 46.2
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 8.6e-13 79.7 120 42.5
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 1.1e-12 79.3 142 34.5
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 2.5e-12 78.2 142 33.8
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 2.5e-12 78.2 142 33.8
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 3.3e-12 77.8 142 33.8
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 3.3e-12 77.8 142 33.8
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 9.5e-12 76.3 142 33.1
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 3.7e-08 64.3 44 63.6
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 4.9e-08 63.9 47 55.3
Os12g0574400 Oryza sativa ssp. japonica HOM05D000810 ORTHO05D014916 1.6e-06 58.9 119 27.7
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 3.5e-06 57.8 72 44.4
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 7.8e-06 56.6 231 23.8


User provided reference genes

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