Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g056340.4 Solanum lycopersicum HOM05D006383 ORTHO05D007815 2.3e-309 1064.7 517 100.0
CAN.G40.1 Capsicum annuum HOM05D006383 ORTHO05D007815 5.1e-269 930.6 517 89.6
Peaxi162Scf00005g01511 Petunia axillaris HOM05D006383 ORTHO05D007815 1.4e-258 896.0 538 83.6
Sopen01g020390 Solanum pennellii HOM05D006383 ORTHO05D007815 6.1e-254 880.6 449 96.2
Actinidia07537 Actinidia chinensis HOM05D006383 ORTHO05D007815 1.2e-249 866.3 503 82.9
Lj8A304T42 Lonicera japonica HOM05D006383 ORTHO05D007815 2.2e-248 862.1 552 77.4
GSVIVG01027490001 Vitis vinifera HOM05D006383 ORTHO05D007815 1.0e-245 853.2 519 79.8
Duzib248G1218 Durio zibethinus HOM05D006383 ORTHO05D007815 1.7e-240 835.9 516 78.7
Nn1g08377 Nelumbo nucifera HOM05D006383 ORTHO05D007815 3.2e-239 831.6 515 78.4
Atru.chr4.4 Acer truncatum HOM05D006383 ORTHO05D007815 1.8e-237 825.9 515 77.5
ECA234G1746 Erigeron canadensis HOM05D006383 ORTHO05D007815 1.8e-237 825.9 529 76.7
Medtr5g008710 Medicago truncatula HOM05D006383 ORTHO05D007815 6.7e-237 823.9 522 76.2
Glyma.01G231700 Glycine max HOM05D006383 ORTHO05D007815 8.8e-237 823.5 515 76.3
Lsat_1_v5_gn_5_82200 Lactuca sativa HOM05D006383 ORTHO05D007815 8.8e-237 823.5 529 77.3
Migut.L01608 Erythranthe guttata HOM05D006383 ORTHO05D007815 1.1e-236 823.2 506 77.9
LjContig00222g0014398 Lotus japonicus HOM05D006383 ORTHO05D007815 7.4e-236 820.5 506 78.1
HanXRQChr10g0309251 Helianthus annuus HOM05D006383 ORTHO05D007815 1.3e-235 819.7 515 78.1
TAR317G0001 Trochodendron aralioides HOM05D006383 ORTHO05D007815 3.7e-235 818.1 533 76.0
Glyma.11G014600 Glycine max HOM05D006383 ORTHO05D007815 4.8e-235 817.8 515 75.9
Haze_11088 Corylus avellana HOM05D006383 ORTHO05D007815 1.1e-234 816.6 531 75.3
Psat2g186800 Pisum sativum HOM05D006383 ORTHO05D007815 1.2e-233 813.1 523 74.6
TPR.G38040 Trifolium pratense HOM05D006383 ORTHO05D007815 1.6e-233 812.8 523 74.6
DCAR_020439 Daucus carota HOM05D006383 ORTHO05D007815 2.0e-233 812.4 521 77.0
TWI79G0526 Tripterygium wilfordii HOM05D006383 ORTHO05D007815 3.5e-233 811.6 512 77.7
Hma1.2p1_0122F.1_g057520 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 5.9e-233 810.8 504 78.4
CSS0026217 Camellia sinensis var. sinensis HOM05D006383 ORTHO05D007815 3.2e-231 805.1 502 78.5
Prupe.2G049900 Prunus persica HOM05D006383 ORTHO05D007815 5.5e-231 804.3 515 75.3
Manes.15G189200 Manihot esculenta HOM05D006383 ORTHO05D007815 4.7e-230 801.2 524 74.6
Cfa008544 Carpinus fangiana HOM05D006383 ORTHO05D007815 5.2e-229 797.7 524 75.0
VMungo1215G1626 Vigna mungo HOM05D006383 ORTHO05D007815 5.2e-229 797.7 508 75.8
QL10p065235 Quercus lobata HOM05D006383 ORTHO05D007815 8.8e-229 797.0 608 66.6
Potri.013G161700 Populus trichocarpa HOM05D006383 ORTHO05D007815 1.2e-228 796.6 526 74.7
Phvul.002G035400 Phaseolus vulgaris HOM05D006383 ORTHO05D007815 4.4e-228 794.7 516 74.8
Gorai.012G136900 Gossypium raimondii HOM05D006383 ORTHO05D007815 5.3e-226 787.7 514 76.1
Gohir.D04G150300 Gossypium hirsutum HOM05D006383 ORTHO05D007815 1.6e-225 786.2 514 76.1
Gohir.A04G110100 Gossypium hirsutum HOM05D006383 ORTHO05D007815 4.5e-225 784.6 514 75.9
PSO782G2360 Papaver somniferum HOM05D006383 ORTHO05D007815 1.3e-224 783.1 504 76.0
Hund03213 Selenicereus undatus HOM05D006383 ORTHO05D007815 4.2e-223 778.1 510 74.7
THA.LOC104813077 Tarenaya hassleriana HOM05D006383 ORTHO05D007815 4.7e-222 774.6 523 73.4
RcHm_v2.0_Chr1g0329651 Rosa chinensis HOM05D006383 ORTHO05D007815 3.0e-221 771.9 503 75.1
Sc26g0001410 Simmondsia chinensis HOM05D006383 ORTHO05D007815 1.5e-220 769.6 515 72.8
CiPaw.02G126400 Carya illinoinensis HOM05D006383 ORTHO05D007815 2.0e-220 769.2 526 73.6
Nitab4.5_0007118g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 2.0e-220 769.2 573 70.5
Lalb_Chr05g0211431 Lupinus albus HOM05D006383 ORTHO05D007815 2.8e-219 765.4 488 75.6
Sp6g07220 Schrenkiella parvula HOM05D006383 ORTHO05D007815 6.3e-219 764.2 527 72.5
SGA_v2.0_scaffold222G42760 Striga asiatica HOM05D006383 ORTHO05D007815 1.4e-218 763.1 549 68.1
MD02G1269900 Malus domestica HOM05D006383 ORTHO05D007815 4.1e-218 761.5 504 74.2
AL6G44030 Arabidopsis lyrata HOM05D006383 ORTHO05D007815 9.1e-218 760.4 531 71.2
CDE09G0807 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 9.1e-218 760.4 507 71.0
Thhalv10028566m.g Eutrema salsugineum HOM05D006383 ORTHO05D007815 3.5e-217 758.4 527 71.5
BcaB01g02763 Brassica carinata HOM05D006383 ORTHO05D007815 5.9e-217 757.7 524 71.4
Aqoxy1G01561 Aquilegia oxysepala HOM05D006383 ORTHO05D007815 7.7e-217 757.3 517 71.0
BolC3t15801H Brassica oleracea HOM05D006383 ORTHO05D007815 8.5e-216 753.8 526 71.1
Eucgr.E01781 Eucalyptus grandis HOM05D006383 ORTHO05D007815 1.1e-215 753.4 515 72.8
C03p34900 Brassica napus HOM05D006383 ORTHO05D007815 1.5e-215 753.1 526 70.9
BcaC01g04690 Brassica carinata HOM05D006383 ORTHO05D007815 1.9e-215 752.7 526 70.9
ClCG05G002590 Citrullus lanatus HOM05D006383 ORTHO05D007815 1.2e-214 750.0 513 71.7
AT4G10180 Arabidopsis thaliana HOM05D006383 ORTHO05D007815 1.6e-214 749.6 532 70.9
BraA03t12085Z Brassica rapa HOM05D006383 ORTHO05D007815 3.6e-214 748.4 526 70.7
CANSAT01G2053 Cannabis sativa HOM05D006383 ORTHO05D007815 4.7e-214 748.0 521 70.6
FAN10G0291 Fragaria x ananassa HOM05D006383 ORTHO05D007815 1.8e-213 746.1 505 72.3
MELO3C006225.2 Cucumis melo HOM05D006383 ORTHO05D007815 3.0e-213 745.3 518 70.5
Carub.0006s2874 Capsella rubella HOM05D006383 ORTHO05D007815 4.0e-213 745.0 530 70.4
A03p28870 Brassica napus HOM05D006383 ORTHO05D007815 6.8e-213 744.2 527 70.6
Oeu021235.1 Olea europaea HOM05D006383 ORTHO05D007815 9.8e-212 740.3 521 72.0
FAN03G2677 Fragaria x ananassa HOM05D006383 ORTHO05D007815 3.7e-211 738.4 510 71.6
Sed0006461 Sechium edule HOM05D006383 ORTHO05D007815 6.3e-211 737.6 513 71.2
CARHR256640 Cardamine hirsuta HOM05D006383 ORTHO05D007815 1.1e-210 736.9 524 70.0
PSO063G0245 Papaver somniferum HOM05D006383 ORTHO05D007815 4.5e-209 731.5 503 72.8
Os01g0104600 Oryza sativa ssp. japonica HOM05D006383 ORTHO05D007815 2.3e-205 719.2 502 69.1
SalBow3G0737 Salvia bowleyana HOM05D006383 ORTHO05D007815 2.0e-204 716.1 547 65.8
SalBow5G2916 Salvia bowleyana HOM05D006383 ORTHO05D007815 2.0e-204 716.1 547 65.8
Aa31LG9G11770 Aethionema arabicum HOM05D006383 ORTHO05D007815 1.1e-202 710.3 515 68.2
Zm00001eb317230 Zea mays HOM05D006383 ORTHO05D007815 2.3e-200 702.6 502 68.7
unitig_8.g3541 Utricularia gibba HOM05D006383 ORTHO05D007815 5.0e-200 701.4 486 68.5
Sabra13G0129300 Salix brachista HOM05D006383 ORTHO05D007815 6.6e-200 701.0 604 61.1
Zm00001eb341540 Zea mays HOM05D006383 ORTHO05D007815 1.0e-197 693.7 502 67.3
Ciclev10015119m.g Citrus clementina HOM05D006383 ORTHO05D007815 3.5e-193 678.7 461 73.8
PGR042G0734 Punica granatum HOM05D006383 ORTHO05D007815 5.0e-192 674.9 503 67.0
ATR0620G042 Amborella trichopoda HOM05D006383 ORTHO05D007815 7.1e-186 654.4 472 68.4
FAN06G4711 Fragaria x ananassa HOM05D006383 ORTHO05D007815 7.1e-186 654.4 516 64.7
Thecc.02G151200 Theobroma cacao HOM05D006383 ORTHO05D007815 7.1e-186 654.4 419 77.3
FvH4_7g04420 Fragaria vesca HOM05D006383 ORTHO05D007815 1.7e-184 649.8 448 71.2
EL10Ac3g06365 Beta vulgaris HOM05D006383 ORTHO05D007815 5.1e-184 648.3 628 54.6
FAN01G1101 Fragaria x ananassa HOM05D006383 ORTHO05D007815 1.4e-181 640.2 566 59.9
CsaV3_3G010030 Cucumis sativus L. HOM05D006383 ORTHO05D007815 1.9e-175 619.8 512 62.9
CiPaw.01G204500 Carya illinoinensis HOM05D006383 ORTHO05D007815 2.1e-169 599.7 402 74.6
Ah.07g203930 Amaranthus hybridus HOM05D000443 ORTHO05D001278 1.5e-164 583.6 503 59.4
Ca_24479_v3 Cicer arietinum L. HOM05D006383 ORTHO05D007815 4.9e-163 578.6 436 67.4
AUR62030094 Chenopodium quinoa HOM05D006383 ORTHO05D007815 1.0e-160 570.9 509 57.4
HPP92_027515 Vanilla planifolia HOM05D006383 ORTHO05D007815 1.5e-159 567.0 478 61.3
Nitab4.5_0021341g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 4.3e-159 565.5 289 93.4
Dinv26644 Davidia involucrata HOM05D006383 ORTHO05D007815 1.8e-157 560.1 332 81.3
SMO351G0573 Selaginella moellendorffii HOM05D006383 ORTHO05D007815 6.4e-155 551.6 519 53.4
PGSC0003DMG400031459 Solanum tuberosum HOM05D006383 ORTHO05D007815 2.4e-149 533.1 273 94.5
Hma1.2p1_0122F.1_g057530 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 5.9e-140 501.9 313 78.9
Rhsim01G0101600 Rhododendron simsii HOM05D006383 ORTHO05D007815 2.0e-132 476.9 309 76.1
SHI24488 Sapria himalayana HOM05D006383 ORTHO05D007815 1.9e-130 470.3 491 52.5
Cc06_g23460 Coffea canephora HOM05D006383 ORTHO05D007815 3.9e-120 436.0 243 83.5
Nitab4.5_0000075g0020 Nicotiana tabacum HOM05D006383 ORTHO05D007815 2.0e-116 423.7 250 84.4
AagrBONN_evm.TU.Sc2ySwM_228.1213 Anthoceros agrestis HOM05D006383 ORTHO05D007815 3.5e-116 422.9 946 31.7
Pp3c21_10400 Physcomitrium patens HOM05D006383 ORTHO05D007815 1.0e-115 421.4 860 33.1
HPP92_022397 Vanilla planifolia HOM05D006383 ORTHO05D007815 1.2e-113 414.5 348 61.8
Mapoly0064s0101 Marchantia polymorpha HOM05D006383 ORTHO05D007815 2.7e-113 413.3 935 30.8
Pp3c11_18250 Physcomitrium patens HOM05D006383 ORTHO05D007815 6.7e-112 408.7 822 33.7
Pp3c19_5540 Physcomitrium patens HOM05D006383 ORTHO05D007815 4.5e-108 396.0 868 31.5
FAN06G0936 Fragaria x ananassa HOM05D006383 ORTHO05D007815 5.0e-107 392.5 293 65.2
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 1.8e-104 384.0 316 63.9
HPP92_022268 Vanilla planifolia HOM05D006383 ORTHO05D007815 3.5e-84 316.6 250 64.8
vmacro20727 Vaccinium macrocarpon HOM05D006383 ORTHO05D007815 5.6e-74 282.7 183 76.5
Cpa.g.sc21.223 Carica papaya HOM05D006383 ORTHO05D007815 6.0e-68 262.7 165 77.0
AUR62038212 Chenopodium quinoa HOM05D006383 ORTHO05D007815 2.8e-65 253.8 265 54.3
CBR_g19443 Chara braunii HOM05D006383 ORTHO05D007815 3.0e-59 233.8 272 49.3
SEGI_12536 Sequoiadendron giganteum HOM05D006383 ORTHO05D007815 6.0e-36 156.4 129 63.6
PRCOL_00006914 Prasinoderma coloniale HOM05D006383 ORTHO05D007815 3.0e-27 127.5 541 23.8
Sopen01g020410 Solanum pennellii HOM05D006383 ORTHO05D007815 1.1e-26 125.6 58 100.0
Zm00001eb129170 Zea mays HOM05D006383 ORTHO05D007815 3.8e-22 110.5 103 57.3
Cre13.g571560 Chlamydomonas reinhardtii HOM05D006383 ORTHO05D007815 4.2e-21 107.1 246 27.6
Zm00001eb417300 Zea mays HOM05D006383 ORTHO05D007815 9.7e-18 95.9 96 56.2
Glyma.13G043200 Glycine max HOM05D006383 ORTHO05D007815 8.2e-17 92.8 68 67.6
CDE11G0182 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 1.4e-16 92.0 245 26.9
arahy.Tifrunner.gnm1.ann1.W6TY16 Arachis hypogaea HOM05D000199 ORTHO05D007815 9.4e-13 79.3 53 79.2
MCO10G269 Micromonas commoda HOM05D006383 ORTHO05D007815 1.4e-11 75.5 335 23.6
Actinidia02533 Actinidia chinensis HOM05D006383 ORTHO05D007815 6.3e-09 66.6 48 68.8
MBI11_g43687_MAGBIO Magnolia biondii HOM05D006383 ORTHO05D007815 8.2e-09 66.2 34 88.2
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 1.7e-06 58.5 39 66.7


User provided reference genes

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