Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g020180.1 Solanum lycopersicum HOM05D003014 ORTHO05D003233 2.1e-64 248.8 122 100.0
Solyc01g107970.1 Solanum lycopersicum HOM05D003014 ORTHO05D003233 1.1e-52 209.9 115 89.6
Sopen01g050170 Solanum pennellii HOM05D003014 ORTHO05D003233 4.1e-52 208.0 115 89.6
PGSC0003DMG400025780 Solanum tuberosum HOM05D003014 ORTHO05D003233 6.0e-51 204.1 119 84.0
Solyc01g020170.2 Solanum lycopersicum HOM05D003014 ORTHO05D003233 1.3e-50 203.0 115 87.0
Solyc01g107950.2 Solanum lycopersicum HOM05D003014 ORTHO05D003233 3.3e-49 198.4 119 83.2
PGSC0003DMG400025783 Solanum tuberosum HOM05D003014 ORTHO05D003233 6.2e-48 194.1 119 80.7
Sopen01g050130 Solanum pennellii HOM05D003014 ORTHO05D003233 4.0e-47 191.4 119 82.4
PGSC0003DMG400025781 Solanum tuberosum HOM05D003014 ORTHO05D003233 2.6e-46 188.7 119 79.8
PGSC0003DMG400025782 Solanum tuberosum HOM05D003014 ORTHO05D003233 1.7e-45 186.0 119 78.2
Sopen01g050150 Solanum pennellii HOM05D003014 ORTHO05D003233 2.2e-45 185.7 119 78.2
Sopen01g050140 Solanum pennellii HOM05D000002 ORTHO05D003233 1.4e-44 183.0 119 78.2
Sopen01g021920 Solanum pennellii HOM05D003014 ORTHO05D003233 5.4e-44 181.0 119 77.3
Solyc01g107960.4 Solanum lycopersicum HOM05D003014 ORTHO05D003233 2.7e-43 178.7 119 76.5
Solyc01g057300.2 Solanum lycopersicum HOM05D003014 ORTHO05D003233 1.7e-42 176.0 119 75.6
PGSC0003DMG400045009 Solanum tuberosum HOM05D003014 ORTHO05D003233 2.8e-40 168.7 127 70.1
PGSC0003DMG400014979 Solanum tuberosum HOM05D003014 ORTHO05D003233 4.4e-38 161.4 102 79.4
Sopen09g010770 Solanum pennellii HOM05D003014 ORTHO05D003233 1.7e-34 149.4 125 60.8
Sopen01g010120 Solanum pennellii HOM05D003014 ORTHO05D003233 2.3e-34 149.1 125 61.6
Solyc01g014910.2 Solanum lycopersicum HOM05D003014 ORTHO05D003233 5.1e-34 147.9 125 61.6
Sopen01g009900 Solanum pennellii HOM05D003014 ORTHO05D003233 1.5e-33 146.4 125 60.8
Solyc09g018150.1 Solanum lycopersicum HOM05D003014 ORTHO05D003233 3.3e-33 145.2 125 59.2
Sopen09g010690 Solanum pennellii HOM05D003014 ORTHO05D003233 3.3e-33 145.2 125 60.0
Sopen01g010070 Solanum pennellii HOM05D003014 ORTHO05D003233 2.2e-29 132.5 111 61.3
Solyc01g014960.1 Solanum lycopersicum HOM05D003014 ORTHO05D003233 2.4e-28 129.0 111 60.4
Nitab4.5_0000292g0060 Nicotiana tabacum HOM05D003014 ORTHO05D003233 4.8e-24 114.8 121 52.9
Nitab4.5_0001428g0060 Nicotiana tabacum HOM05D003014 ORTHO05D003233 4.0e-23 111.7 129 51.2
Nitab4.5_0007431g0020 Nicotiana tabacum HOM05D003014 ORTHO05D003233 1.5e-22 109.8 131 49.6
Peaxi162Scf00016g02026 Petunia axillaris HOM05D003014 ORTHO05D003233 2.0e-22 109.4 133 49.6
Peaxi162Scf00152g00131 Petunia axillaris HOM05D003014 ORTHO05D003233 4.4e-22 108.2 132 50.8
Nitab4.5_0001230g0010 Nicotiana tabacum HOM05D003014 ORTHO05D003233 4.9e-21 104.8 128 49.2
CAN.G1231.38 Capsicum annuum HOM05D003014 ORTHO05D003233 1.4e-20 103.2 132 46.2
Dinv15730 Davidia involucrata HOM05D003014 ORTHO05D003233 1.2e-19 100.1 124 46.0
CAN.G1041.44 Capsicum annuum HOM05D003014 ORTHO05D003233 4.6e-19 98.2 130 44.6
CAN.G1041.46 Capsicum annuum HOM05D003014 ORTHO05D003233 1.0e-18 97.1 132 45.5
CAN.G1838.2 Capsicum annuum HOM05D003014 ORTHO05D003233 1.0e-18 97.1 132 45.5
Dinv42167 Davidia involucrata HOM05D003014 ORTHO05D003233 1.0e-18 97.1 125 44.0
GSVIVG01031718001 Vitis vinifera HOM05D003014 ORTHO05D003233 1.7e-18 96.3 127 46.5
TAR376G0856 Trochodendron aralioides HOM05D003014 ORTHO05D003233 7.3e-17 90.9 125 43.2
Cfa004537 Carpinus fangiana HOM05D003014 ORTHO05D003233 1.3e-16 90.1 129 41.9
vmacro02036 Vaccinium macrocarpon HOM05D003014 ORTHO05D003233 1.3e-16 90.1 131 42.7
CiPaw.06G171700 Carya illinoinensis HOM05D003014 ORTHO05D003233 1.6e-16 89.7 131 42.0
Haze_10098 Corylus avellana HOM05D003014 ORTHO05D003233 2.1e-16 89.4 131 42.7
Nn1g04801 Nelumbo nucifera HOM05D003014 ORTHO05D003233 8.1e-16 87.4 127 39.4
PGR042G3868 Punica granatum HOM05D003014 ORTHO05D003233 1.4e-15 86.7 133 41.4
Rhsim11G0164600 Rhododendron simsii HOM05D003014 ORTHO05D003233 1.4e-15 86.7 130 43.8
Thecc.02G102900 Theobroma cacao HOM05D003014 ORTHO05D003233 1.4e-15 86.7 128 43.0
Lj9C355T10 Lonicera japonica HOM05D003014 ORTHO05D003233 1.8e-15 86.3 142 42.3
Lj9C357T7 Lonicera japonica HOM05D003014 ORTHO05D003233 1.8e-15 86.3 142 42.3
HPP92_002772 Vanilla planifolia HOM05D003014 ORTHO05D003233 1.8e-15 86.3 129 41.1
Thecc.08G003900 Theobroma cacao HOM05D003014 ORTHO05D003233 2.4e-15 85.9 126 38.1
Aqoxy5G01197 Aquilegia oxysepala HOM05D003014 ORTHO05D003233 4.0e-15 85.1 126 42.9
Potri.001G305100 Populus trichocarpa HOM05D003014 ORTHO05D003233 4.0e-15 85.1 126 38.9
Eucgr.G01493 Eucalyptus grandis HOM05D003014 ORTHO05D003233 5.3e-15 84.7 128 38.3
Hma1.2p1_0370F.1_g137650 Hydrangea macrophylla HOM05D003014 ORTHO05D003233 6.9e-15 84.3 124 41.1
MBI17_g08637_MAGBIO Magnolia biondii HOM05D003014 ORTHO05D003233 6.9e-15 84.3 121 40.5
CAN.G1838.1 Capsicum annuum HOM05D003014 ORTHO05D003233 2.0e-14 82.8 123 42.3
Oeu013724.1 Olea europaea HOM05D003014 ORTHO05D003233 2.0e-14 82.8 123 43.9
Prupe.8G127700 Prunus persica HOM05D003014 ORTHO05D003233 3.4e-14 82.0 123 40.7
TAR381G0350 Trochodendron aralioides HOM05D003014 ORTHO05D003233 5.8e-14 81.3 126 41.3
ECA240G1347 Erigeron canadensis HOM05D003014 ORTHO05D003233 7.6e-14 80.9 127 40.2
Lj4g0009952 Lotus japonicus HOM05D003014 ORTHO05D003233 7.6e-14 80.9 125 39.2
Sabra16G0191500 Salix brachista HOM05D000187 ORTHO05D000230 7.6e-14 80.9 127 39.4
Cc02_g18940 Coffea canephora HOM05D003014 ORTHO05D003233 9.9e-14 80.5 122 38.5
Sc08g0001710 Simmondsia chinensis HOM05D003014 ORTHO05D003233 9.9e-14 80.5 137 34.3
Ciclev10030106m.g Citrus clementina HOM05D003014 ORTHO05D003233 1.3e-13 80.1 131 38.2
Manes.10G080300 Manihot esculenta HOM05D003014 ORTHO05D003233 1.7e-13 79.7 132 38.6
Hund00113 Selenicereus undatus HOM05D003014 ORTHO05D003233 1.7e-13 79.7 122 41.8
Lj4g0025998 Lotus japonicus HOM05D003014 ORTHO05D003233 2.2e-13 79.3 126 38.1
Sabra09G0076200 Salix brachista HOM05D003014 ORTHO05D003233 2.2e-13 79.3 126 36.5
Solyc09g018130.3 Solanum lycopersicum HOM05D003014 ORTHO05D003233 2.2e-13 79.3 75 53.3
Lalb_Chr20g0108401 Lupinus albus HOM05D003014 ORTHO05D003233 2.9e-13 79.0 116 40.5
Medtr4g085700 Medicago truncatula HOM05D003014 ORTHO05D003233 3.8e-13 78.6 132 38.6
Sed0010940 Sechium edule HOM05D003014 ORTHO05D003233 4.9e-13 78.2 123 38.2
SEGI_00209 Sequoiadendron giganteum HOM05D003014 ORTHO05D003233 6.4e-13 77.8 122 38.5
Medtr4g085660 Medicago truncatula HOM05D003014 ORTHO05D003233 8.4e-13 77.4 132 37.9
Oeu001777.1 Olea europaea HOM05D003014 ORTHO05D003233 8.4e-13 77.4 117 41.0
QL11p034987 Quercus lobata HOM05D003014 ORTHO05D003233 1.4e-12 76.6 131 40.5
COL.COLO4_32636 Corchorus olitorius HOM05D003014 ORTHO05D003233 3.2e-12 75.5 144 36.8
Duzib132G1208 Durio zibethinus HOM05D003014 ORTHO05D003233 3.2e-12 75.5 126 39.7
SalBow3G0638 Salvia bowleyana HOM05D003014 ORTHO05D003233 3.2e-12 75.5 117 37.6
SGA_v2.0_scaffold393G50697 Striga asiatica HOM05D003014 ORTHO05D003233 3.2e-12 75.5 120 41.7
CSS0044289 Camellia sinensis var. sinensis HOM05D003014 ORTHO05D003233 4.2e-12 75.1 128 39.8
Oeu007296.1 Olea europaea HOM05D003014 ORTHO05D003233 4.2e-12 75.1 125 38.4
Ciclev10003973m.g Citrus clementina HOM05D003014 ORTHO05D003233 5.4e-12 74.7 127 38.6
Gohir.A01G122666 Gossypium hirsutum HOM05D003014 ORTHO05D003233 7.1e-12 74.3 127 37.0
CSS0015958 Camellia sinensis var. sinensis HOM05D003014 ORTHO05D003233 9.3e-12 73.9 133 38.3
CSS0023387 Camellia sinensis var. sinensis HOM05D003014 ORTHO05D003233 9.3e-12 73.9 130 38.5
CsaV3_7G008580 Cucumis sativus L. HOM05D003014 ORTHO05D003233 9.3e-12 73.9 142 35.9
PSO170G5216 Papaver somniferum HOM05D003014 ORTHO05D003233 9.3e-12 73.9 141 33.3
Lsat_1_v5_gn_9_110961 Lactuca sativa HOM05D003014 ORTHO05D003233 1.2e-11 73.6 129 38.0
Prupe.1G432900 Prunus persica HOM05D003014 ORTHO05D003233 1.2e-11 73.6 119 36.1
Manes.18G039500 Manihot esculenta HOM05D003014 ORTHO05D003233 1.6e-11 73.2 126 38.1
Actinidia00429 Actinidia chinensis HOM05D003014 ORTHO05D003233 2.1e-11 72.8 126 37.3
TWI56G0629 Tripterygium wilfordii HOM05D003014 ORTHO05D003233 2.1e-11 72.8 128 34.4
HanXRQChr03g0074841 Helianthus annuus HOM05D003014 ORTHO05D003233 2.7e-11 72.4 118 38.1
EL10Ac9g21584 Beta vulgaris HOM05D003014 ORTHO05D003233 4.6e-11 71.6 141 31.9
Gohir.A01G122633 Gossypium hirsutum HOM05D003014 ORTHO05D003233 4.6e-11 71.6 127 35.4
Gohir.D13G040200 Gossypium hirsutum HOM05D003014 ORTHO05D003233 4.6e-11 71.6 123 41.5
Gorai.013G045100 Gossypium raimondii HOM05D003014 ORTHO05D003233 4.6e-11 71.6 123 41.5
ECA240G0588 Erigeron canadensis HOM05D000071 ORTHO05D003233 6.0e-11 71.2 127 36.2
Glyma.02G103200 Glycine max HOM05D003014 ORTHO05D003233 6.0e-11 71.2 118 38.1
Gohir.A13G041500 Gossypium hirsutum HOM05D003014 ORTHO05D003233 7.9e-11 70.9 123 40.7
TWI36G1467 Tripterygium wilfordii HOM05D003014 ORTHO05D003233 7.9e-11 70.9 125 35.2
arahy.Tifrunner.gnm1.ann1.U584NJ Arachis hypogaea HOM05D003014 ORTHO05D003233 1.0e-10 70.5 123 34.1
Sabra14G0017800 Salix brachista HOM05D003014 ORTHO05D003233 1.0e-10 70.5 127 33.9
Gorai.002G135000 Gossypium raimondii HOM05D003014 ORTHO05D003233 1.3e-10 70.1 127 37.8
Phvul.003G048000 Phaseolus vulgaris HOM05D003014 ORTHO05D003233 1.3e-10 70.1 117 36.8
THA.LOC104806046 Tarenaya hassleriana HOM05D003014 ORTHO05D003233 1.3e-10 70.1 138 33.3
Gohir.D01G110400 Gossypium hirsutum HOM05D003014 ORTHO05D003233 1.8e-10 69.7 127 35.4
MD15G1079900 Malus domestica HOM05D003014 ORTHO05D003233 1.8e-10 69.7 121 33.9
CDE02G2363 Ceratophyllum demersum HOM05D003014 ORTHO05D003233 3.0e-10 68.9 120 35.0
RcHm_v2.0_Chr6g0257881 Rosa chinensis HOM05D003014 ORTHO05D003233 3.9e-10 68.6 147 32.7
TPR.G12728 Trifolium pratense HOM05D003014 ORTHO05D003233 3.9e-10 68.6 132 36.4
CANSAT25G0518 Cannabis sativa HOM05D003014 ORTHO05D003233 6.7e-10 67.8 131 35.9
GSVIVG01009469001 Vitis vinifera HOM05D003014 ORTHO05D003233 1.1e-09 67.0 128 35.2
Psat0s1066g0040 Pisum sativum HOM05D003014 ORTHO05D003233 1.5e-09 66.6 134 33.6
PSO210G4688 Papaver somniferum HOM05D003014 ORTHO05D003233 1.9e-09 66.2 161 29.8
MELO3C018451.2 Cucumis melo HOM05D003014 ORTHO05D003233 2.5e-09 65.9 142 33.8
FvH4_2g05810 Fragaria vesca HOM05D003014 ORTHO05D003233 3.3e-09 65.5 148 35.8
Atru.chr13.721 Acer truncatum HOM05D003014 ORTHO05D003233 4.3e-09 65.1 140 36.4
ATR0584G279 Amborella trichopoda HOM05D003014 ORTHO05D003233 4.3e-09 65.1 117 37.6
CAN.G1041.45 Capsicum annuum HOM05D003014 ORTHO05D003233 4.3e-09 65.1 64 53.1
arahy.Tifrunner.gnm1.ann1.DD1GZC Arachis hypogaea HOM05D003014 ORTHO05D003233 5.6e-09 64.7 136 31.6
Lalb_Chr20g0108391 Lupinus albus HOM05D003014 ORTHO05D003233 5.6e-09 64.7 118 36.4
Potri.014G025900 Populus trichocarpa HOM05D003014 ORTHO05D003233 5.6e-09 64.7 129 34.1
FAN24G2463 Fragaria x ananassa HOM05D003014 ORTHO05D003233 7.4e-09 64.3 145 35.9
Psat0s1067g0080 Pisum sativum HOM05D003014 ORTHO05D003233 7.4e-09 64.3 132 33.3
Sopen01g050160 Solanum pennellii HOM05D003014 ORTHO05D009630 7.4e-09 64.3 37 78.4
Migut.B00361 Erythranthe guttata HOM05D003014 ORTHO05D003233 2.1e-08 62.8 120 37.5
Psat7g178280 Pisum sativum HOM05D003014 ORTHO05D003233 2.1e-08 62.8 128 33.6
FAN15G1137 Fragaria x ananassa HOM05D003014 ORTHO05D003233 3.7e-08 62.0 145 34.5
Mapoly0126s0029 Marchantia polymorpha HOM05D003014 ORTHO05D003233 4.8e-08 61.6 126 34.1
QL02p004396 Quercus lobata HOM05D003014 ORTHO05D003233 6.2e-08 61.2 118 32.2
unitig_0.g90 Utricularia gibba HOM05D003014 ORTHO05D003233 6.2e-08 61.2 119 33.6
Manes.05G175600 Manihot esculenta HOM05D003014 ORTHO05D003233 1.1e-07 60.5 112 35.7
Sed0005157 Sechium edule HOM05D003014 ORTHO05D003233 1.4e-07 60.1 128 32.0
FAN20G1742 Fragaria x ananassa HOM05D003014 ORTHO05D003233 1.8e-07 59.7 134 32.8
Psat7g126080 Pisum sativum HOM05D003014 ORTHO05D003233 1.8e-07 59.7 119 34.5
Zm00001eb082900 Zea mays HOM05D003014 ORTHO05D003233 1.8e-07 59.7 158 30.4
HanXRQChr03g0068661 Helianthus annuus HOM05D003014 ORTHO05D003233 3.1e-07 58.9 126 34.1
RcHm_v2.0_Chr6g0308241 Rosa chinensis HOM05D003014 ORTHO05D003233 3.1e-07 58.9 131 29.8
Psat7g126040 Pisum sativum HOM05D003014 ORTHO05D003233 4.0e-07 58.5 118 34.7
VMungo0251G3056 Vigna mungo HOM05D003014 ORTHO05D003233 4.0e-07 58.5 115 33.9
ClCG02G005950 Citrullus lanatus HOM05D003014 ORTHO05D003233 5.3e-07 58.2 139 30.2
CARHR039820 Cardamine hirsuta HOM05D003014 ORTHO05D003233 6.9e-07 57.8 147 29.3
AUR62013224 Chenopodium quinoa HOM05D003014 ORTHO05D003233 1.2e-06 57.0 129 30.2
Cpa.g.sc21.177 Carica papaya HOM05D003014 ORTHO05D003233 1.5e-06 56.6 139 28.1
Psat0s5079g0040 Pisum sativum HOM05D003014 ORTHO05D003233 2.0e-06 56.2 127 32.3
Lalb_Chr05g0224851 Lupinus albus HOM05D003014 ORTHO05D003233 2.6e-06 55.8 134 30.6
Psat1g001360 Pisum sativum HOM05D003014 ORTHO05D003233 2.6e-06 55.8 118 31.4
SMO270G0033 Selaginella moellendorffii HOM05D003014 ORTHO05D003233 4.5e-06 55.1 116 31.0
CSS0020055 Camellia sinensis var. sinensis HOM05D003014 ORTHO05D003233 5.8e-06 54.7 111 35.1
AUR62010242 Chenopodium quinoa HOM05D003014 ORTHO05D003233 5.8e-06 54.7 116 31.9
Psat0s672g0040 Pisum sativum HOM05D003014 ORTHO05D003233 5.8e-06 54.7 134 30.6
Psat7g225560 Pisum sativum HOM05D003014 ORTHO05D003233 5.8e-06 54.7 132 29.5
VMungo0251G1556 Vigna mungo HOM05D003014 ORTHO05D003233 7.6e-06 54.3 119 30.3
Phvul.003G048100 Phaseolus vulgaris HOM05D003014 ORTHO05D003233 1.0e-05 53.9 118 30.5


User provided reference genes

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