Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g017200.2 Solanum lycopersicum HOM05D000806 ORTHO05D002320 5.7e-53 210.7 110 100.0
Solyc00g500065.1 Solanum lycopersicum HOM05D000806 ORTHO05D002320 3.1e-38 161.8 148 65.5
Peaxi162Scf00021g00818 Petunia axillaris HOM05D000806 ORTHO05D002320 3.9e-33 144.8 148 59.5
CAN.G219.28 Capsicum annuum HOM05D001133 ORTHO05D000941 1.4e-30 136.3 165 51.5
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 1.2e-29 133.3 177 48.6
Hma1.2p1_0355F.1_g133926 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 2.2e-28 129.0 154 52.6
Solyc04g039830.3 Solanum lycopersicum HOM05D000806 ORTHO05D002320 2.1e-26 122.5 110 68.2
Hma1.2p1_0242F.1_g100626 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 6.6e-25 117.5 145 51.0
Hma1.2p1_0355F.1_g133923 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 6.6e-25 117.5 145 51.0
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 1.2e-23 113.2 148 49.3
DCAR_032493 Daucus carota HOM05D000806 ORTHO05D002320 1.1e-22 110.2 142 47.9
Sed0009930 Sechium edule HOM05D000806 ORTHO05D002320 1.8e-22 109.4 149 49.0
CAN.G1183.3 Capsicum annuum HOM05D000806 ORTHO05D002320 5.2e-22 107.8 213 38.0
PGR111G0026 Punica granatum HOM05D000806 ORTHO05D002320 6.8e-22 107.5 148 48.0
RcHm_v2.0_Chr5g0042991 Rosa chinensis HOM05D000806 ORTHO05D002320 6.8e-22 107.5 109 56.0
Eucgr.I02537 Eucalyptus grandis HOM05D000806 ORTHO05D002320 4.9e-20 101.3 109 56.0
HanXRQChr00c0702g0576831 Helianthus annuus HOM05D000806 ORTHO05D002320 1.4e-19 99.8 142 45.8
HanXRQChr01g0020371 Helianthus annuus HOM05D000806 ORTHO05D002320 1.4e-19 99.8 142 45.8
HanXRQChr10g0284231 Helianthus annuus HOM05D000806 ORTHO05D002320 1.4e-19 99.8 142 45.8
HanXRQChr10g0289251 Helianthus annuus HOM05D000806 ORTHO05D002320 1.4e-19 99.8 142 45.8
HanXRQChr11g0326811 Helianthus annuus HOM05D000806 ORTHO05D002320 1.4e-19 99.8 142 45.8
HanXRQCPg0580021 Helianthus annuus HOM05D000806 ORTHO05D002320 1.4e-19 99.8 142 45.8
LjContig00318g0000728 Lotus japonicus HOM05D000806 ORTHO05D002320 3.2e-19 98.6 151 44.4
Lj1g0000993 Lotus japonicus HOM05D000806 ORTHO05D002320 4.1e-19 98.2 122 50.0
Peaxi162Scf01064g00230 Petunia axillaris HOM05D000806 ORTHO05D002320 4.1e-19 98.2 56 83.9
RcHm_v2.0_CPg0502101 Rosa chinensis HOM05D000806 ORTHO05D002320 1.6e-18 96.3 142 43.7
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.1e-18 95.9 116 49.1
Peaxi162Scf00937g00111 Petunia axillaris HOM05D000806 ORTHO05D002320 2.1e-18 95.9 56 82.1
Nitab4.5_0003644g0070 Nicotiana tabacum HOM05D000806 ORTHO05D002320 7.8e-18 94.0 49 91.8
Sopen07g002120 Solanum pennellii HOM05D000806 ORTHO05D002320 7.8e-18 94.0 49 91.8
CAN.G1007.1 Capsicum annuum HOM05D000806 ORTHO05D002320 1.0e-17 93.6 49 89.8
CAN.G1012.3 Capsicum annuum HOM05D000806 ORTHO05D002320 1.0e-17 93.6 56 80.4
CAN.G445.6 Capsicum annuum HOM05D000806 ORTHO05D002320 1.0e-17 93.6 49 89.8
Solyc09g091410.2 Solanum lycopersicum HOM05D000806 ORTHO05D002320 1.7e-17 92.8 62 83.9
HanXRQChr10g0318221 Helianthus annuus HOM05D000806 ORTHO05D002320 2.3e-17 92.4 56 78.6
Nitab4.5_0009663g0040 Nicotiana tabacum HOM05D000806 ORTHO05D002320 2.3e-17 92.4 56 80.4
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.9e-17 91.7 147 42.9
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 3.9e-17 91.7 56 76.8
Potri.013G162600 Populus trichocarpa HOM05D000806 ORTHO05D002320 5.1e-17 91.3 148 43.9
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 6.6e-17 90.9 147 42.9
Gohir.A07G163654 Gossypium hirsutum HOM05D000806 ORTHO05D002320 6.6e-17 90.9 147 42.9
PSO548G0072 Papaver somniferum HOM05D000806 ORTHO05D002320 6.6e-17 90.9 148 41.2
Lalb_Chr10g0102281 Lupinus albus HOM05D000806 ORTHO05D002320 8.7e-17 90.5 54 81.5
Lalb_Chr23g0274531 Lupinus albus HOM05D000806 ORTHO05D002320 8.7e-17 90.5 54 81.5
CAN.G1693.6 Capsicum annuum HOM05D000806 ORTHO05D002320 1.1e-16 90.1 49 85.7
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 2.5e-16 89.0 148 43.9
CAN.G212.7 Capsicum annuum HOM05D000680 ORTHO05D002320 2.5e-16 89.0 160 41.2
Gorai.003G066100 Gossypium raimondii HOM05D000806 ORTHO05D002320 4.3e-16 88.2 127 44.9
Sopen04g010000 Solanum pennellii HOM05D000806 ORTHO05D002320 4.3e-16 88.2 62 74.2
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 7.3e-16 87.4 56 73.2
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 7.3e-16 87.4 56 73.2
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 7.3e-16 87.4 49 83.7
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.2e-15 86.7 56 73.2
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.2e-15 86.7 56 73.2
Gohir.A09G101966 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.2e-15 86.7 130 43.8
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 1.6e-15 86.3 56 73.2
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 1.6e-15 86.3 46 87.0
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 1.6e-15 86.3 46 87.0
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 2.8e-15 85.5 55 76.4
Gohir.D13G043800 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.8e-15 85.5 147 41.5
CAN.G88.2 Capsicum annuum HOM05D000806 ORTHO05D002320 4.7e-15 84.7 48 85.4
Lsat_1_v5_gn_7_98301 Lactuca sativa HOM05D000806 ORTHO05D002320 1.4e-14 83.2 54 72.2
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 2.4e-14 82.4 49 81.6
AUR62041919 Chenopodium quinoa HOM05D000806 ORTHO05D002324 2.4e-14 82.4 49 81.6
Nitab4.5_0000342g0250 Nicotiana tabacum HOM05D000806 ORTHO05D002320 2.4e-14 82.4 43 88.4
HanXRQChr10g0283541 Helianthus annuus HOM05D000806 ORTHO05D002320 3.1e-14 82.0 133 42.1
Sc23g0003920 Simmondsia chinensis HOM05D000806 ORTHO05D002320 3.1e-14 82.0 49 79.6
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 4.0e-14 81.6 57 71.9
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 6.9e-14 80.9 49 81.6
AUR62006476 Chenopodium quinoa HOM05D000806 ORTHO05D002320 9.0e-14 80.5 49 79.6
AUR62032522 Chenopodium quinoa HOM05D000806 ORTHO05D002320 9.0e-14 80.5 49 79.6
AUR62042261 Chenopodium quinoa HOM05D000806 ORTHO05D002324 9.0e-14 80.5 49 79.6
ATCG00500 Arabidopsis thaliana HOM05D000806 ORTHO05D002320 1.2e-13 80.1 141 38.3
Thhalv10011034m.g Eutrema salsugineum HOM05D000806 ORTHO05D002320 1.2e-13 80.1 56 67.9
Nn010s41432 Nelumbo nucifera HOM05D000806 ORTHO05D002320 2.0e-13 79.3 144 41.0
Nn010s41447 Nelumbo nucifera HOM05D000806 ORTHO05D002320 2.0e-13 79.3 144 41.0
C09p40220 Brassica napus HOM05D000806 ORTHO05D002320 2.6e-13 79.0 143 39.2
BcaC04g21638 Brassica carinata HOM05D000806 ORTHO05D002320 4.4e-13 78.2 56 66.1
arahy.Tifrunner.gnm1.ann1.15M9SP Arachis hypogaea HOM05D000806 ORTHO05D002320 5.8e-13 77.8 51 76.5
BraA06t25423Z Brassica rapa HOM05D000806 ORTHO05D002320 5.8e-13 77.8 141 39.7
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 5.8e-13 77.8 141 39.7
MD02G1049400 Malus domestica HOM05D000806 ORTHO05D002320 5.8e-13 77.8 49 75.5
C02p43520 Brassica napus HOM05D000806 ORTHO05D002320 9.9e-13 77.0 56 66.1
C09p29580 Brassica napus HOM05D000806 ORTHO05D002320 9.9e-13 77.0 56 66.1
BraSC59t46593Z Brassica rapa HOM05D000806 ORTHO05D002320 9.9e-13 77.0 56 66.1
AL2G21530 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 1.3e-12 76.6 56 64.3
TPR.G16839 Trifolium pratense HOM05D000806 ORTHO05D002320 1.7e-12 76.3 72 56.9
BolSC47t61099H Brassica oleracea HOM05D000806 ORTHO05D002320 3.8e-12 75.1 143 38.5
Oeu012807.1 Olea europaea HOM05D000806 ORTHO05D002320 3.8e-12 75.1 50 72.0
Lj2A1237T126 Lonicera japonica HOM05D000806 ORTHO05D002320 6.4e-12 74.3 55 60.0
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 6.4e-12 74.3 55 60.0
AUR62023874 Chenopodium quinoa HOM05D000806 ORTHO05D002324 8.4e-12 73.9 49 73.5
AUR62028418 Chenopodium quinoa HOM05D000806 ORTHO05D002324 8.4e-12 73.9 49 75.5
BolSC35t60644H Brassica oleracea HOM05D000806 ORTHO05D002320 1.4e-11 73.2 56 64.3
BolSC35t60752H Brassica oleracea HOM05D000806 ORTHO05D002320 1.4e-11 73.2 56 64.3
CAN.G398.12 Capsicum annuum HOM05D001133 ORTHO05D000941 1.4e-11 73.2 62 64.5
BolSC29t60465H Brassica oleracea HOM05D000806 ORTHO05D002320 1.9e-11 72.8 142 38.0
BolSC29t60587H Brassica oleracea HOM05D000806 ORTHO05D002320 4.2e-11 71.6 56 62.5
Phvul.002G278116 Phaseolus vulgaris HOM05D000806 ORTHO05D002320 4.2e-11 71.6 135 40.0
SGA_v2.0_scaffold400G50898 Striga asiatica HOM05D000806 ORTHO05D002320 4.2e-11 71.6 40 82.5
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 9.3e-11 70.5 49 69.4
AL2G20668 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 1.2e-10 70.1 48 66.7
arahy.Tifrunner.gnm1.ann1.J4M97S Arachis hypogaea HOM05D000806 ORTHO05D002320 1.2e-10 70.1 126 38.9
CAN.G1012.4 Capsicum annuum HOM05D000806 ORTHO05D002320 1.2e-10 70.1 67 62.7
CARHR116850 Cardamine hirsuta HOM05D000806 ORTHO05D002320 2.1e-10 69.3 51 62.7
Nn265s45953 Nelumbo nucifera HOM05D000806 ORTHO05D002320 2.7e-10 68.9 49 71.4
BNapus_Darmor_BZH_scaffold_287p00130 Brassica napus HOM05D000806 ORTHO05D002320 3.5e-10 68.6 56 58.9
VMungo0251G1963 Vigna mungo HOM05D000806 ORTHO05D010715 3.5e-10 68.6 49 71.4
Lj1P303T21 Lonicera japonica HOM05D000806 ORTHO05D002320 6.0e-10 67.8 53 56.6
CDE02G1301 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 3.0e-09 65.5 47 72.3
BolSC49t61185H Brassica oleracea HOM05D000806 ORTHO05D002320 6.6e-09 64.3 49 61.2
BcaB01g03056 Brassica carinata HOM05D000806 ORTHO05D002320 1.5e-08 63.2 50 60.0
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 2.5e-08 62.4 43 67.4
Migut.L00565 Erythranthe guttata HOM05D000806 ORTHO05D002320 4.3e-08 61.6 132 38.6
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 5.6e-08 61.2 77 46.8
RcHm_v2.0_Chr6g0281331 Rosa chinensis HOM05D000806 ORTHO05D002320 2.1e-07 59.3 41 68.3
SalBow6G0751 Salvia bowleyana HOM05D001898 ORTHO05D002580 2.1e-07 59.3 31 90.3
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 2.8e-07 58.9 43 69.8
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 2.8e-07 58.9 31 87.1
arahy.Tifrunner.gnm1.ann1.6V23H5 Arachis hypogaea HOM05D000806 ORTHO05D002320 3.6e-07 58.5 36 75.0
HPP92_028392 Vanilla planifolia HOM05D000806 ORTHO05D002320 3.6e-07 58.5 51 56.9
HPP92_028399 Vanilla planifolia HOM05D000806 ORTHO05D002320 3.6e-07 58.5 51 56.9
HPP92_028409 Vanilla planifolia HOM05D000806 ORTHO05D002320 3.6e-07 58.5 51 56.9
Lsat_1_v5_gn_8_144641 Lactuca sativa HOM05D000806 ORTHO05D002320 4.8e-07 58.2 31 87.1
BraSC25t45846Z Brassica rapa HOM05D000806 ORTHO05D002320 8.1e-07 57.4 40 65.0
Oeu028778.1 Olea europaea HOM05D000806 ORTHO05D002320 1.1e-06 57.0 30 90.0
Lsat_1_v5_gn_4_69500 Lactuca sativa HOM05D000806 ORTHO05D002320 1.4e-06 56.6 34 76.5
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 1.4e-06 56.6 31 87.1
ECA236G1817 Erigeron canadensis HOM05D000806 ORTHO05D000001 1.8e-06 56.2 31 83.9
CSS0050017 Camellia sinensis var. sinensis HOM05D000806 ORTHO05D002320 5.3e-06 54.7 62 50.0
Medtr3g080300 Medicago truncatula HOM05D000806 ORTHO05D002320 5.3e-06 54.7 35 71.4
HanXRQChr02g0044911 Helianthus annuus HOM05D000806 ORTHO05D002320 6.9e-06 54.3 119 35.3
vmacro18167 Vaccinium macrocarpon HOM05D000806 ORTHO05D002320 9.0e-06 53.9 49 53.1


User provided reference genes

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