Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g015130.1 Solanum lycopersicum HOM05D002077 ORTHO05D000818 3.0e-44 181.4 90 100.0
PGSC0003DMG400030222 Solanum tuberosum HOM05D002077 ORTHO05D000818 9.5e-30 133.3 125 60.0
PGSC0003DMG400014329 Solanum tuberosum HOM05D002077 ORTHO05D000818 5.2e-28 127.5 125 59.2
PGSC0003DMG400030223 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.5e-27 125.9 125 57.6
PGSC0003DMG400024052 Solanum tuberosum HOM05D002077 ORTHO05D000818 5.8e-27 124.0 125 56.8
PGSC0003DMG402014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.2e-26 122.1 125 56.8
Sopen03g004760 Solanum pennellii HOM05D002077 ORTHO05D000818 1.3e-23 112.8 125 52.8
Solyc03g025940.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 3.0e-23 111.7 124 52.4
PGSC0003DMG402014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.6e-21 105.9 124 50.8
Nitab4.5_0000716g0180 Nicotiana tabacum HOM05D002077 ORTHO05D000818 8.1e-21 103.6 127 50.4
Nitab4.5_0003365g0050 Nicotiana tabacum HOM05D002077 ORTHO05D000818 8.1e-21 103.6 127 50.4
CAN.G1154.4 Capsicum annuum HOM05D002077 ORTHO05D000818 1.1e-20 103.2 132 47.7
Sopen03g004730 Solanum pennellii HOM05D002077 ORTHO05D000818 1.4e-20 102.8 124 48.4
PGSC0003DMG403014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.4e-20 102.8 124 48.4
CAN.G913.3 Capsicum annuum HOM05D002077 ORTHO05D000818 5.2e-20 100.9 125 49.6
PGSC0003DMG401014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 5.2e-20 100.9 128 48.4
Peaxi162Scf00915g00025 Petunia axillaris HOM05D002077 ORTHO05D000818 1.5e-19 99.4 125 48.0
Cc02_g03120 Coffea canephora HOM05D002077 ORTHO05D000818 3.4e-19 98.2 126 46.0
Dinv35206 Davidia involucrata HOM05D002077 ORTHO05D000818 7.6e-19 97.1 126 44.4
Hma1.2p1_3140F.1_g333050 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 2.9e-18 95.1 126 43.7
Sopen03g004750 Solanum pennellii HOM05D002077 ORTHO05D000818 3.8e-18 94.7 125 46.4
Actinidia34102 Actinidia chinensis HOM05D002077 ORTHO05D000818 4.9e-18 94.4 126 41.3
Rhsim03G0179600 Rhododendron simsii HOM05D002077 ORTHO05D000818 4.9e-18 94.4 126 43.7
Solyc03g025920.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 6.4e-18 94.0 117 47.0
Lj8A25T67 Lonicera japonica HOM05D002077 ORTHO05D000818 8.4e-18 93.6 125 42.4
Migut.F01126 Erythranthe guttata HOM05D002077 ORTHO05D000818 2.4e-17 92.0 126 42.9
CSS0046422 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 5.4e-17 90.9 126 42.1
arahy.Tifrunner.gnm1.ann1.KCRD8X Arachis hypogaea HOM05D002077 ORTHO05D000818 7.1e-17 90.5 126 41.3
HanXRQChr15g0495581 Helianthus annuus HOM05D002077 ORTHO05D000818 9.2e-17 90.1 126 42.9
HanXRQChr15g0495591 Helianthus annuus HOM05D002077 ORTHO05D000818 9.2e-17 90.1 126 42.9
Lj5g0027705 Lotus japonicus HOM05D002077 ORTHO05D000818 9.2e-17 90.1 126 41.3
SGA_v2.0_scaffold10G05344 Striga asiatica HOM05D002077 ORTHO05D000818 2.1e-16 89.0 128 40.6
Ca_10779_v3 Cicer arietinum L. HOM05D002077 ORTHO05D000818 2.7e-16 88.6 126 41.3
Oeu035467.1 Olea europaea HOM05D002077 ORTHO05D000818 4.6e-16 87.8 125 44.0
Hma1.2p1_2482F.1_g323020 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 6.0e-16 87.4 126 42.9
Prupe.2G293200 Prunus persica HOM05D002077 ORTHO05D000818 6.0e-16 87.4 124 41.1
arahy.Tifrunner.gnm1.ann1.6H6H67 Arachis hypogaea HOM05D002077 ORTHO05D000818 7.8e-16 87.0 126 41.3
Haze_13726 Corylus avellana HOM05D002077 ORTHO05D000818 7.8e-16 87.0 126 38.9
FvH4_7g29350 Fragaria vesca HOM05D002077 ORTHO05D000818 7.8e-16 87.0 124 39.5
FAN06G1288 Fragaria x ananassa HOM05D002077 ORTHO05D006729 7.8e-16 87.0 124 39.5
FAN06G1718 Fragaria x ananassa HOM05D002077 ORTHO05D006729 7.8e-16 87.0 124 39.5
TWI14G1216 Tripterygium wilfordii HOM05D002077 ORTHO05D000818 1.0e-15 86.7 126 40.5
Cfa008309 Carpinus fangiana HOM05D002077 ORTHO05D000818 1.3e-15 86.3 126 38.9
Solyc03g025930.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.3e-15 86.3 96 56.2
Oeu021781.1 Olea europaea HOM05D002077 ORTHO05D000818 1.7e-15 85.9 127 42.5
Lalb_Chr06g0161071 Lupinus albus HOM05D002077 ORTHO05D000818 2.3e-15 85.5 126 39.7
MD01G1199600 Malus domestica HOM05D002077 ORTHO05D000818 3.0e-15 85.1 123 41.5
VMungo0720G0161 Vigna mungo HOM05D002077 ORTHO05D000818 3.0e-15 85.1 126 38.9
Ciclev10005501m.g Citrus clementina HOM05D002077 ORTHO05D000818 3.9e-15 84.7 126 39.7
Phvul.007G069000 Phaseolus vulgaris HOM05D002077 ORTHO05D000818 5.1e-15 84.3 126 38.1
Medtr1g100707 Medicago truncatula HOM05D002077 ORTHO05D000818 6.6e-15 84.0 126 38.9
Potri.012G137700 Populus trichocarpa HOM05D002077 ORTHO05D000818 6.6e-15 84.0 126 40.5
Glyma.10G236900 Glycine max HOM05D002077 ORTHO05D000818 8.7e-15 83.6 126 38.1
SalBow2G3420 Salvia bowleyana HOM05D002077 ORTHO05D000818 8.7e-15 83.6 126 40.5
Glyma.20G157500 Glycine max HOM05D002077 ORTHO05D000818 1.1e-14 83.2 126 37.3
Psat6g199880 Pisum sativum HOM05D002077 ORTHO05D000818 1.1e-14 83.2 126 38.1
Actinidia32869 Actinidia chinensis HOM05D002077 ORTHO05D000818 1.5e-14 82.8 120 40.0
Hma1.2p1_2094F.1_g313920 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 1.5e-14 82.8 126 42.9
TPR.G14327 Trifolium pratense HOM05D002077 ORTHO05D000818 1.9e-14 82.4 128 37.5
Atru.chr1.476 Acer truncatum HOM05D002077 ORTHO05D000818 2.5e-14 82.0 127 41.7
Potri.015G139700 Populus trichocarpa HOM05D002077 ORTHO05D000818 2.5e-14 82.0 126 41.3
Thecc.03G175300 Theobroma cacao HOM05D002077 ORTHO05D000818 2.5e-14 82.0 126 38.1
Manes.06G146400 Manihot esculenta HOM05D002077 ORTHO05D000818 3.3e-14 81.6 126 38.9
Medtr1g100697 Medicago truncatula HOM05D002077 ORTHO05D000818 3.3e-14 81.6 126 38.1
COL.COLO4_14296 Corchorus olitorius HOM05D002077 ORTHO05D000818 4.3e-14 81.3 126 37.3
FAN03G1828 Fragaria x ananassa HOM05D002077 ORTHO05D006729 5.6e-14 80.9 120 38.3
TAR636G1697 Trochodendron aralioides HOM05D002077 ORTHO05D000818 5.6e-14 80.9 124 37.9
RcHm_v2.0_Chr1g0377111 Rosa chinensis HOM05D002077 ORTHO05D000818 7.3e-14 80.5 124 38.7
MD07G1267500 Malus domestica HOM05D002077 ORTHO05D000818 9.6e-14 80.1 123 37.4
PSO063G0361 Papaver somniferum HOM05D002077 ORTHO05D000818 1.2e-13 79.7 126 38.9
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.6e-13 79.3 122 37.7
Gohir.A09G041000 Gossypium hirsutum HOM05D002077 ORTHO05D000818 1.6e-13 79.3 126 36.5
ECA238G3926 Erigeron canadensis HOM05D002077 ORTHO05D000818 2.1e-13 79.0 124 38.7
Gohir.D09G041900 Gossypium hirsutum HOM05D002077 ORTHO05D000818 2.1e-13 79.0 126 36.5
Gorai.006G048100 Gossypium raimondii HOM05D002077 ORTHO05D000818 2.1e-13 79.0 126 36.5
GSVIVG01010544001 Vitis vinifera HOM05D002077 ORTHO05D000818 2.1e-13 79.0 131 38.2
QL09p014520 Quercus lobata HOM05D002077 ORTHO05D000818 2.8e-13 78.6 119 40.3
Cpa.g.sc107.40 Carica papaya HOM05D002077 ORTHO05D000818 3.6e-13 78.2 122 37.7
CSS0043143 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 6.2e-13 77.4 125 39.2
Duzib205G0590 Durio zibethinus HOM05D002077 ORTHO05D000818 6.2e-13 77.4 126 35.7
Eucgr.A02798 Eucalyptus grandis HOM05D002077 ORTHO05D000818 6.2e-13 77.4 126 37.3
HanXRQChr07g0207061 Helianthus annuus HOM05D002077 ORTHO05D000818 1.1e-12 76.6 126 35.7
Sabra15G0150400 Salix brachista HOM05D002077 ORTHO05D000818 1.1e-12 76.6 119 40.3
Lsat_1_v5_gn_2_131821 Lactuca sativa HOM05D002077 ORTHO05D000818 1.4e-12 76.3 127 37.0
Prupe.2G293100 Prunus persica HOM05D002077 ORTHO05D000818 1.4e-12 76.3 137 34.3
PSO782G4919 Papaver somniferum HOM05D002077 ORTHO05D000818 2.4e-12 75.5 126 37.3
Solyc03g062800.1 Solanum lycopersicum HOM05D002077 ORTHO05D000818 3.1e-12 75.1 56 67.9
Dinv28453 Davidia involucrata HOM05D002077 ORTHO05D000818 4.0e-12 74.7 61 59.0
Solyc03g096620.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 4.0e-12 74.7 91 51.6
Aa31LG11G3080 Aethionema arabicum HOM05D002077 ORTHO05D000818 5.3e-12 74.3 84 45.2
CAN.G1704.4 Capsicum annuum HOM05D002077 ORTHO05D000818 5.3e-12 74.3 56 67.9
PGR042G3255 Punica granatum HOM05D002077 ORTHO05D000818 5.3e-12 74.3 126 37.3
Eucgr.A02799 Eucalyptus grandis HOM05D002077 ORTHO05D000818 1.5e-11 72.8 126 35.7
vmacro06694 Vaccinium macrocarpon HOM05D002077 ORTHO05D000818 1.5e-11 72.8 61 59.0
BcaC09g49912 Brassica carinata HOM05D002077 ORTHO05D000818 4.4e-11 71.2 128 34.4
A01p25170 Brassica napus HOM05D002077 ORTHO05D000818 4.4e-11 71.2 128 34.4
C01p31370 Brassica napus HOM05D002077 ORTHO05D000818 4.4e-11 71.2 128 34.4
BolC1t03074H Brassica oleracea HOM05D002077 ORTHO05D000818 4.4e-11 71.2 128 34.4
BraA01t02425Z Brassica rapa HOM05D002077 ORTHO05D000818 4.4e-11 71.2 128 34.4
TPR.G14336 Trifolium pratense HOM05D002077 ORTHO05D000818 4.4e-11 71.2 123 35.8
DCAR_009358 Daucus carota HOM05D002077 ORTHO05D000818 7.6e-11 70.5 122 32.8
PGSC0003DMG400014362 Solanum tuberosum HOM05D002077 ORTHO05D000818 7.6e-11 70.5 51 72.5
RcHm_v2.0_Chr1g0377061 Rosa chinensis HOM05D002077 ORTHO05D000818 1.3e-10 69.7 118 36.4
Sp5g13170 Schrenkiella parvula HOM05D002077 ORTHO05D000818 1.3e-10 69.7 128 34.4
MD07G1267400 Malus domestica HOM05D002077 ORTHO05D000818 1.7e-10 69.3 125 35.2
Carub.0005s1505 Capsella rubella HOM05D002077 ORTHO05D000818 3.8e-10 68.2 128 33.6
Aa31LG4G17390 Aethionema arabicum HOM05D002077 ORTHO05D000818 4.9e-10 67.8 122 32.0
CARHR157690 Cardamine hirsuta HOM05D002077 ORTHO05D000818 4.9e-10 67.8 128 32.8
Aqoxy5G03957 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 6.4e-10 67.4 120 35.8
BcaB05g22980 Brassica carinata HOM05D002077 ORTHO05D000818 6.4e-10 67.4 125 32.8
Thhalv10010519m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 8.4e-10 67.0 128 33.6
RcHm_v2.0_Chr1g0377091 Rosa chinensis HOM05D002077 ORTHO05D000818 8.4e-10 67.0 127 36.2
HPP92_008435 Vanilla planifolia HOM05D002077 ORTHO05D000818 8.4e-10 67.0 121 34.7
AT3G48880 Arabidopsis thaliana HOM05D002077 ORTHO05D000818 1.4e-09 66.2 128 32.0
ECA232G3548 Erigeron canadensis HOM05D002077 ORTHO05D000818 1.4e-09 66.2 61 54.1
BcaC07g39363 Brassica carinata HOM05D002077 ORTHO05D000818 1.9e-09 65.9 128 32.8
C08p23850 Brassica napus HOM05D002077 ORTHO05D000818 1.9e-09 65.9 128 32.8
BolC8t50011H Brassica oleracea HOM05D002077 ORTHO05D000818 1.9e-09 65.9 128 32.8
FvH4_7g29340 Fragaria vesca HOM05D002077 ORTHO05D000818 1.9e-09 65.9 127 33.9
Sp2g23500 Schrenkiella parvula HOM05D002077 ORTHO05D000818 2.4e-09 65.5 125 35.2
Solyc03g026400.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 2.4e-09 65.5 54 61.1
AL5G28390 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 5.4e-09 64.3 128 31.2
FAN10G4305 Fragaria x ananassa HOM05D002077 ORTHO05D000818 5.4e-09 64.3 127 33.1
MBI18_g44743_MAGBIO Magnolia biondii HOM05D002077 ORTHO05D000818 7.1e-09 63.9 120 31.7
FAN03G0915 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.6e-08 62.8 127 33.1
Thhalv10005421m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 3.5e-08 61.6 129 30.2
Medtr1g100713 Medicago truncatula HOM05D002077 ORTHO05D000818 4.6e-08 61.2 125 33.6
Os10g0502900 Oryza sativa ssp. japonica HOM05D002077 ORTHO05D000818 7.8e-08 60.5 118 32.2
THA.LOC104824394 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 1.7e-07 59.3 125 31.2
Medtr4g099030 Medicago truncatula HOM05D002077 ORTHO05D000818 3.0e-07 58.5 116 31.9
TPR.G34129 Trifolium pratense HOM05D002077 ORTHO05D000818 3.0e-07 58.5 111 35.1
CARHR189810 Cardamine hirsuta HOM05D002077 ORTHO05D000818 5.1e-07 57.8 117 35.0
Zm00001eb044180 Zea mays HOM05D002077 ORTHO05D000818 8.7e-07 57.0 118 33.1
FAN03G1381 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.5e-06 56.2 133 31.6
FAN10G2215 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.9e-06 55.8 134 32.1
Nn1g01424 Nelumbo nucifera HOM05D002077 ORTHO05D000818 3.3e-06 55.1 99 33.3
Psat7g237160 Pisum sativum HOM05D002077 ORTHO05D000818 4.3e-06 54.7 124 33.1
Psat7g237200 Pisum sativum HOM05D002077 ORTHO05D000818 4.3e-06 54.7 124 33.1
AL6G35000 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 5.6e-06 54.3 124 31.5
HPP92_008461 Vanilla planifolia HOM05D002077 ORTHO05D000818 9.6e-06 53.5 56 46.4


User provided reference genes

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