Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500087.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.0e-38 161.8 72 100.0
Solyc00g500124.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.0e-38 161.8 72 100.0
Solyc00g500192.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.0e-38 161.8 72 100.0
Solyc01g011410.2 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.0e-38 161.8 72 100.0
Peaxi162Scf00030g02114 Petunia axillaris HOM05D000533 ORTHO05D001069 1.3e-37 159.1 72 98.6
QL93p0141_0008 Quercus lobata HOM05D000533 ORTHO05D001069 2.9e-37 157.9 72 95.8
Nn1g08631 Nelumbo nucifera HOM05D000533 ORTHO05D001069 6.4e-37 156.8 72 95.8
TAR625G0265 Trochodendron aralioides HOM05D000533 ORTHO05D001069 3.2e-36 154.5 72 93.1
PSO548G0122 Papaver somniferum HOM05D000533 ORTHO05D001069 4.2e-36 154.1 72 91.7
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 5.4e-36 153.7 72 94.4
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 7.1e-36 153.3 72 88.9
HanXRQChr00c0336g0573701 Helianthus annuus HOM05D000533 ORTHO05D001069 9.3e-36 152.9 72 91.7
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 9.3e-36 152.9 72 91.7
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 9.3e-36 152.9 72 91.7
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 9.3e-36 152.9 72 91.7
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 9.3e-36 152.9 72 91.7
HanXRQChr17g0557731 Helianthus annuus HOM05D000533 ORTHO05D001069 9.3e-36 152.9 72 91.7
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 9.3e-36 152.9 72 91.7
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 9.3e-36 152.9 72 91.7
Lsat_1_v5_gn_4_33860 Lactuca sativa HOM05D000533 ORTHO05D001069 1.2e-35 152.5 72 90.3
Lsat_1_v5_gn_9_115440 Lactuca sativa HOM05D000533 ORTHO05D001069 1.2e-35 152.5 72 90.3
Lsat_1_v5_gn_9_49240 Lactuca sativa HOM05D000533 ORTHO05D001069 1.2e-35 152.5 72 90.3
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.1e-35 151.8 72 88.9
ECA074G0013 Erigeron canadensis HOM05D000533 ORTHO05D001069 2.7e-35 151.4 72 90.3
PGR111G0062 Punica granatum HOM05D000533 ORTHO05D001069 2.7e-35 151.4 72 91.7
Hma1.2p1_0660F.1_g197430 Hydrangea macrophylla HOM05D000533 ORTHO05D001069 4.6e-35 150.6 72 91.7
ATCG01110 Arabidopsis thaliana HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 90.3
C05p53840 Brassica napus HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 90.3
C07p33470 Brassica napus HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 90.3
C09p40300 Brassica napus HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 90.3
BolSC29t60510H Brassica oleracea HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 90.3
BolSC35t60708H Brassica oleracea HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 90.3
BolSC37t60797H Brassica oleracea HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 90.3
BolSC45t60905H Brassica oleracea HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 90.3
BolSC49t61147H Brassica oleracea HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 90.3
BraSC138t45531Z Brassica rapa HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 90.3
BraSC143t45656Z Brassica rapa HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 90.3
BraSC25t45914Z Brassica rapa HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 90.3
BraSC59t46530Z Brassica rapa HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 90.3
BraSC59t46554Z Brassica rapa HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 90.3
RhsimPtG0005000 Rhododendron simsii HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 88.9
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 88.9
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 6.0e-35 150.2 72 88.9
FvH4_6g41620 Fragaria vesca HOM05D000533 ORTHO05D001069 1.3e-34 149.1 72 90.3
FvH4_c3g00020 Fragaria vesca HOM05D000533 ORTHO05D001069 1.3e-34 149.1 72 90.3
GSVIVG01012613001 Vitis vinifera HOM05D000533 ORTHO05D001069 1.3e-34 149.1 72 90.3
DCAR_032542 Daucus carota HOM05D000533 ORTHO05D001069 3.9e-34 147.5 72 88.9
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 5.1e-34 147.1 72 86.1
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 5.1e-34 147.1 72 86.1
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 5.1e-34 147.1 72 86.1
unitig_91.g26523 Utricularia gibba HOM05D000533 ORTHO05D001069 6.7e-34 146.7 72 87.5
Atru.chr5.1326 Acer truncatum HOM05D000533 ORTHO05D001069 8.7e-34 146.4 72 86.1
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 8.7e-34 146.4 72 86.1
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 8.7e-34 146.4 72 86.1
Sed0014804 Sechium edule HOM05D000533 ORTHO05D001069 8.7e-34 146.4 72 87.5
Lj2C1238G31 Lonicera japonica HOM05D000533 ORTHO05D001069 1.5e-33 145.6 72 88.9
Lju5009C0T5 Lonicera japonica HOM05D000533 ORTHO05D001069 1.5e-33 145.6 72 88.9
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 1.5e-33 145.6 72 87.5
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 1.9e-33 145.2 72 86.1
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 1.9e-33 145.2 72 86.1
ATR0043G018 Amborella trichopoda HOM05D000533 ORTHO05D001069 2.5e-33 144.8 72 87.5
Nitab4.5_0000843g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 4.3e-33 144.1 67 94.0
arahy.Tifrunner.gnm1.ann1.RF9S3R Arachis hypogaea HOM05D000533 ORTHO05D001069 5.6e-33 143.7 72 84.7
Ah.10g027020 Amaranthus hybridus HOM05D000533 ORTHO05D001069 7.4e-33 143.3 72 84.7
BolC2t08926H Brassica oleracea HOM05D000533 ORTHO05D001069 1.6e-32 142.1 72 86.1
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 2.1e-32 141.7 72 84.7
LjContig00318g0022363 Lotus japonicus HOM05D000533 ORTHO05D001069 2.8e-32 141.4 72 81.9
LjContig00319g0004717 Lotus japonicus HOM05D000533 ORTHO05D001069 2.8e-32 141.4 72 81.9
arahy.Tifrunner.gnm1.ann1.EMA6B0 Arachis hypogaea HOM05D000533 ORTHO05D001069 4.8e-32 140.6 72 83.3
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 1.1e-31 139.4 66 90.9
Nn1g00561 Nelumbo nucifera HOM05D000533 ORTHO05D001069 1.8e-31 138.7 70 87.1
Sed0015694 Sechium edule HOM05D000533 ORTHO05D001069 2.4e-31 138.3 68 86.8
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 5.3e-31 137.1 67 85.1
Lsat_1_v5_gn_8_137301 Lactuca sativa HOM05D000533 ORTHO05D001069 1.2e-30 136.0 71 84.5
SEGI_05748 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 1.5e-30 135.6 72 80.6
SEGI_26586 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.5e-30 135.6 72 80.6
SEGI_36880 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.5e-30 135.6 72 80.6
SEGI_41539 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.5e-30 135.6 72 80.6
SEGI_11816 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.3e-29 132.5 72 77.8
Gohir.1Z050466 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.5e-28 128.3 72 80.6
Gorai.003G071300 Gossypium raimondii HOM05D000533 ORTHO05D001069 3.5e-27 124.4 67 79.1
Solyc00g500280.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 7.9e-27 123.2 54 100.0
CAN.G965.3 Capsicum annuum HOM05D000533 ORTHO05D001069 2.5e-25 118.2 72 73.6
SMO086G0065 Selaginella moellendorffii HOM05D000533 ORTHO05D001069 7.4e-25 116.7 72 69.4
Lalb_Chr25g0284051 Lupinus albus HOM05D000533 ORTHO05D001069 1.6e-24 115.5 58 87.9
Lalb_Chr20g0116591 Lupinus albus HOM05D000533 ORTHO05D001069 1.4e-23 112.5 55 89.1
Hund30658 Selenicereus undatus HOM05D000533 ORTHO05D001069 3.1e-23 111.3 49 95.9
HanXRQChr00c0504g0575331 Helianthus annuus HOM05D000533 ORTHO05D001069 6.9e-23 110.2 49 93.9
arahy.Tifrunner.gnm1.ann1.N9T5J4 Arachis hypogaea HOM05D000533 ORTHO05D001069 3.4e-22 107.8 54 85.2
Psat7g199400 Pisum sativum HOM05D000533 ORTHO05D001069 2.2e-21 105.1 60 71.7
Nitab4.5_0006409g0080 Nicotiana tabacum HOM05D000533 ORTHO05D001069 8.4e-21 103.2 50 92.0
Eucgr.B00847 Eucalyptus grandis HOM05D000533 ORTHO05D001069 1.9e-20 102.1 72 65.3
Medtr1g099540 Medicago truncatula HOM05D000533 ORTHO05D001069 6.1e-19 97.1 50 82.0
BolC9t56912H Brassica oleracea HOM05D000533 ORTHO05D001069 1.9e-17 92.0 44 86.4
Peaxi162Scf00133g00521 Petunia axillaris HOM05D000533 ORTHO05D001069 1.3e-16 89.4 44 86.4
Nitab4.5_0001313g0080 Nicotiana tabacum HOM05D000533 ORTHO05D001069 8.2e-16 86.7 72 62.5
Peaxi162Scf00080g00525 Petunia axillaris HOM05D000533 ORTHO05D001069 1.2e-14 82.8 38 92.1
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.6e-14 81.6 72 54.2
Lsat_1_v5_gn_5_66001 Lactuca sativa HOM05D000533 ORTHO05D001069 3.4e-14 81.3 39 92.3
PGSC0003DMG401008783 Solanum tuberosum HOM05D000533 ORTHO05D001069 4.5e-14 80.9 38 94.7
ClCG07G012690 Citrullus lanatus HOM05D000533 ORTHO05D001069 5.9e-14 80.5 36 88.9
CAN.G378.10 Capsicum annuum HOM05D000533 ORTHO05D001069 7.7e-14 80.1 39 89.7
Medtr1g051590 Medicago truncatula HOM05D000533 ORTHO05D001069 1.0e-13 79.7 36 88.9
AL9U11960 Arabidopsis lyrata HOM05D000533 ORTHO05D001069 2.2e-13 78.6 63 61.9
Mapoly0048s0044 Marchantia polymorpha HOM05D000533 ORTHO05D001069 5.0e-13 77.4 32 96.9
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 6.5e-13 77.0 39 82.1
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 6.5e-13 77.0 39 82.1
EL10Ac1g02290 Beta vulgaris HOM05D000533 ORTHO05D001069 8.5e-13 76.6 39 87.2
EL10Ac6g14289 Beta vulgaris HOM05D000533 ORTHO05D001069 8.5e-13 76.6 39 87.2
EL10Ac9g21011 Beta vulgaris HOM05D000533 ORTHO05D001069 8.5e-13 76.6 39 87.2
AUR62028573 Chenopodium quinoa HOM05D000533 ORTHO05D001069 1.4e-12 75.9 48 72.9
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.4e-12 75.9 72 51.4
Gohir.A13G086335 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.5e-12 75.1 39 79.5
AUR62015545 Chenopodium quinoa HOM05D000533 ORTHO05D001069 7.2e-12 73.6 38 86.8
AUR62043262 Chenopodium quinoa HOM05D000533 ORTHO05D001069 7.2e-12 73.6 48 70.8
Psat5g037800 Pisum sativum HOM05D000533 ORTHO05D001069 7.9e-11 70.1 37 83.8
Sed0009234 Sechium edule HOM05D000533 ORTHO05D001069 7.9e-11 70.1 72 48.6
Ca_29118_v3 Cicer arietinum L. HOM05D000533 ORTHO05D001069 1.1e-09 66.2 70 44.3
EL10Ac8g19820 Beta vulgaris HOM05D000533 ORTHO05D001069 7.4e-09 63.5 26 100.0
Cre09.g405850 Chlamydomonas reinhardtii HOM05D000533 ORTHO05D001069 9.7e-09 63.2 71 42.3
PRCOL_00000735 Prasinoderma coloniale HOM05D000533 ORTHO05D001069 9.7e-09 63.2 70 40.0
Medtr6g011030 Medicago truncatula HOM05D000533 ORTHO05D001069 1.3e-08 62.8 40 72.5
ATR0203G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 1.7e-08 62.4 70 40.0
Mapoly0011s0058 Marchantia polymorpha HOM05D000533 ORTHO05D001069 1.7e-08 62.4 71 35.2
AagrBONN_evm.TU.Sc2ySwM_117.4105 Anthoceros agrestis HOM05D000533 ORTHO05D001069 3.7e-08 61.2 70 37.1
Aqoxy84s002 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 4.8e-08 60.8 71 38.0
Solyc11g021237.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 1.8e-07 58.9 66 51.5
ATR1208G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 3.1e-07 58.2 70 37.1
SEGI_01046 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 5.3e-07 57.4 70 37.1
SEGI_25166 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 5.3e-07 57.4 70 37.1
Gorai.013G076700 Gossypium raimondii HOM05D000533 ORTHO05D001069 6.9e-07 57.0 24 95.8
Haze_26686 Corylus avellana HOM05D000533 ORTHO05D001069 1.2e-06 56.2 70 35.7
FAN26G3352 Fragaria x ananassa HOM05D000533 ORTHO05D001069 1.5e-06 55.8 70 34.3
CANSAT16G0052 Cannabis sativa HOM05D000533 ORTHO05D001069 4.5e-06 54.3 70 34.3
Cfa022526 Carpinus fangiana HOM05D000533 ORTHO05D001069 4.5e-06 54.3 70 37.1
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 4.5e-06 54.3 70 34.3
FAN20G0581 Fragaria x ananassa HOM05D000533 ORTHO05D001069 4.5e-06 54.3 70 34.3
Nitab4.5_0007336g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 4.5e-06 54.3 70 35.7
RcHm_v2.0_MTg0498261 Rosa chinensis HOM05D000533 ORTHO05D001069 4.5e-06 54.3 70 34.3
Haze_27200 Corylus avellana HOM05D000533 ORTHO05D001069 7.7e-06 53.5 70 40.0
Gorai.004G123700 Gossypium raimondii HOM05D000533 ORTHO05D001069 7.7e-06 53.5 72 38.9


User provided reference genes

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