Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 0.0e+00 1291.2 671 100.0
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 0.0e+00 1281.9 671 99.0
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 0.0e+00 1189.5 672 92.4
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 0.0e+00 1143.3 664 89.0
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 0.0e+00 1077.4 664 85.8
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 4.4e-289 997.7 870 65.5
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 7.0e-287 990.3 679 75.6
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 2.8e-283 978.4 662 75.8
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 2.0e-281 972.2 657 76.1
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 5.4e-279 964.1 676 74.3
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 5.4e-279 964.1 662 75.4
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 2.4e-274 948.7 662 73.6
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 4.0e-274 948.0 665 73.5
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 4.4e-273 944.5 672 72.5
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 5.8e-273 944.1 659 73.0
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 1.7e-272 942.6 659 73.7
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 4.9e-272 941.0 672 71.9
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 3.2e-271 938.3 657 73.2
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 4.1e-271 937.9 661 71.9
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 7.8e-270 933.7 659 73.0
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 7.8e-270 933.7 679 71.6
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 1.0e-269 933.3 658 73.6
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 2.3e-269 932.2 651 73.9
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 2.8e-267 925.2 659 72.2
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 8.1e-267 923.7 657 73.2
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 4.0e-266 921.4 657 73.2
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 4.0e-266 921.4 666 71.8
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 1.5e-265 919.5 675 69.9
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 7.6e-265 917.1 656 73.6
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 8.4e-264 913.7 681 70.0
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 1.1e-263 913.3 663 70.6
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 1.9e-263 912.5 654 71.7
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 3.2e-263 911.8 662 70.7
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 4.2e-263 911.4 665 71.1
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 2.1e-262 909.1 658 71.4
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 2.7e-262 908.7 657 72.0
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 2.3e-261 905.6 662 71.1
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 3.9e-261 904.8 667 70.5
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 8.7e-261 903.7 669 69.8
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 1.9e-260 902.5 662 70.1
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 2.5e-260 902.1 669 70.0
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 5.6e-260 901.0 667 71.1
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 9.6e-260 900.2 659 71.0
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 1.3e-259 899.8 673 69.2
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 3.6e-259 898.3 658 71.1
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 4.8e-259 897.9 662 70.4
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 8.1e-259 897.1 653 70.4
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 2.4e-258 895.6 654 71.9
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 6.9e-258 894.0 669 69.4
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 6.9e-258 894.0 653 70.3
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 9.0e-258 893.6 653 70.1
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 6.4e-256 887.5 662 70.2
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 8.4e-256 887.1 694 68.0
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 1.8e-253 879.4 657 69.3
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 3.0e-253 878.6 653 68.8
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 3.9e-253 878.2 654 69.3
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 6.7e-253 877.5 654 69.6
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 1.1e-252 876.7 657 69.4
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 2.5e-252 875.5 669 68.2
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 2.5e-252 875.5 664 69.0
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 3.3e-252 875.2 663 69.2
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 4.0e-250 868.2 692 67.3
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 6.9e-250 867.5 695 67.2
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 1.5e-249 866.3 659 69.0
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 1.5e-249 866.3 653 68.3
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 1.3e-248 863.2 656 68.3
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 1.7e-248 862.8 661 68.7
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 2.7e-246 855.5 659 69.2
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 6.7e-245 850.9 644 69.3
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 4.0e-242 841.6 657 67.0
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 1.0e-240 837.0 657 66.7
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 9.3e-239 830.5 658 66.1
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 9.3e-239 830.5 661 64.8
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.8e-237 826.2 692 64.5
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.0e-237 825.5 649 66.7
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 1.5e-236 823.2 612 70.8
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 5.7e-236 821.2 595 72.3
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 1.8e-234 816.2 603 70.8
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 9.0e-234 813.9 665 63.8
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 1.2e-233 813.5 677 64.3
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 2.7e-230 802.4 738 60.6
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 2.8e-227 792.3 618 68.1
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 1.2e-225 786.9 598 69.4
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 2.9e-224 782.3 599 68.9
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 9.4e-223 777.3 687 61.1
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 5.7e-212 741.5 676 58.6
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 1.7e-211 740.0 653 61.3
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 5.5e-207 724.9 704 57.4
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 6.3e-203 711.4 659 57.7
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 2.7e-193 679.5 499 71.7
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 2.2e-187 659.8 848 47.8
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.1e-186 657.5 666 53.5
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 1.6e-182 643.7 507 66.3
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.1e-182 643.3 574 60.3
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 1.9e-178 630.2 476 69.1
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 8.6e-168 594.7 567 55.6
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 3.5e-161 572.8 492 62.4
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 8.1e-158 561.6 604 53.5
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.6e-142 510.8 439 61.5
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 4.0e-133 479.6 441 59.2
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 7.7e-116 422.2 465 51.0
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 7.2e-106 389.0 348 60.1
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.5e-79 301.6 205 75.6
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 2.6e-79 300.8 411 43.6
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 2.2e-78 297.7 201 75.6
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 7.7e-76 289.3 232 61.2
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 1.3e-75 288.5 437 41.9
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.3e-67 261.9 181 71.8
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.2e-65 255.4 381 43.0
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 4.1e-61 240.4 170 68.2
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 2.0e-60 238.0 284 50.7
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 5.6e-58 229.9 249 56.2
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 2.0e-47 194.9 142 69.7
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-41 175.6 427 29.5
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 9.9e-39 166.0 145 60.7
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 9.9e-39 166.0 167 55.1
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 6.0e-36 156.8 97 78.4
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 5.1e-35 153.7 95 81.1
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.5e-34 152.1 92 78.3
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 2.5e-34 151.4 147 56.5
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 5.8e-31 140.2 90 74.4
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 9.9e-31 139.4 93 71.0
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 6.4e-30 136.7 101 64.4
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.9e-29 135.2 92 70.7
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 4.2e-29 134.0 79 82.3
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 8.7e-27 126.3 153 46.4
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 3.6e-25 120.9 423 29.8
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 4.8e-25 120.6 179 43.0
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 6.2e-25 120.2 83 72.3
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 7.6e-23 113.2 96 64.6
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 6.4e-22 110.2 84 66.7
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 2.3e-19 101.7 90 61.1
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.9e-18 98.6 165 37.0
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 6.2e-17 93.6 65 67.7
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.1e-16 92.8 67 70.1
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 5.3e-16 90.5 70 64.3
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 9.3e-13 79.7 50 76.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 9.3e-13 79.7 50 76.0
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-12 79.3 58 63.8
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 7.9e-12 76.6 61 65.6
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 8.7e-11 73.2 50 70.0
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 4.1e-08 64.3 89 47.2
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.7e-06 58.9 62 43.5


User provided reference genes

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