Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 5.4e-246 854.0 458 100.0
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 1.3e-236 822.8 463 93.7
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 2.7e-229 798.5 460 93.0
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 4.8e-210 734.6 471 83.0
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.0e-200 702.6 471 80.5
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 2.1e-194 682.6 455 81.1
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 4.8e-186 654.8 472 71.8
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 8.2e-186 654.1 433 82.0
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 1.7e-183 646.4 470 71.7
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.1e-182 643.7 470 70.6
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 2.5e-182 642.5 471 71.8
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 5.5e-182 641.3 471 70.3
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.6e-181 639.8 467 74.1
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 3.6e-181 638.6 473 70.6
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 3.9e-180 635.2 458 70.5
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 1.5e-179 633.3 477 70.9
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 7.4e-179 630.9 471 69.4
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 9.7e-179 630.6 469 68.7
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 1.6e-178 629.8 491 68.0
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 3.7e-178 628.6 470 73.4
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 3.7e-178 628.6 469 68.0
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 1.8e-177 626.3 492 67.9
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 2.4e-177 625.9 471 69.4
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 4.1e-177 625.2 471 73.0
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 4.1e-177 625.2 523 64.8
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 5.3e-177 624.8 475 67.8
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.3e-177 624.8 475 67.4
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 6.9e-177 624.4 467 69.0
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 6.9e-177 624.4 469 69.5
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-176 623.6 465 68.2
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 1.5e-176 623.2 468 68.8
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.6e-176 622.5 499 67.3
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 5.9e-176 621.3 467 69.0
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 5.9e-176 621.3 467 69.0
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.0e-175 620.5 475 68.4
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 1.0e-175 620.5 471 67.7
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 1.0e-175 620.5 464 70.0
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.3e-175 620.2 463 69.8
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 2.9e-175 619.0 497 67.2
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 5.0e-175 618.2 467 68.7
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 5.0e-175 618.2 467 68.7
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 5.0e-175 618.2 474 68.6
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 5.0e-175 618.2 485 67.8
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 6.5e-175 617.8 476 67.4
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 1.9e-174 616.3 458 69.9
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.9e-174 616.3 458 68.1
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 1.9e-174 616.3 477 69.8
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 2.5e-174 615.9 464 68.1
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 3.2e-174 615.5 485 67.4
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 3.2e-174 615.5 458 67.9
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 4.2e-174 615.1 460 69.1
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 4.2e-174 615.1 449 70.8
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 7.2e-174 614.4 480 67.9
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 9.4e-174 614.0 467 67.9
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 1.2e-173 613.6 467 67.9
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 1.6e-173 613.2 468 67.5
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 3.6e-173 612.1 467 67.5
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 3.6e-173 612.1 472 69.9
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 4.6e-173 611.7 460 69.1
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 6.1e-173 611.3 460 67.8
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 3.0e-172 609.0 513 64.5
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 5.1e-172 608.2 464 67.0
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 1.5e-171 606.7 373 81.0
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.5e-171 606.7 464 70.9
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.3e-171 605.5 460 67.4
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 3.3e-171 605.5 465 69.2
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 4.4e-171 605.1 474 68.4
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 1.7e-170 603.2 461 68.3
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 3.7e-170 602.1 458 67.9
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 3.7e-170 602.1 458 67.9
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 4.8e-170 601.7 460 68.0
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 4.8e-170 601.7 467 68.5
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 1.8e-169 599.7 460 67.0
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 3.1e-169 599.0 469 65.9
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 2.0e-168 596.3 460 67.2
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 2.0e-168 596.3 468 66.7
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 2.0e-168 596.3 465 70.8
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 4.5e-168 595.1 468 69.7
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 4.5e-168 595.1 504 63.9
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 7.7e-168 594.3 471 65.4
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.7e-168 594.3 443 67.5
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 8.5e-167 590.9 458 68.8
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.1e-166 590.5 470 69.1
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 1.9e-166 589.7 472 68.4
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 4.2e-166 588.6 504 65.1
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 7.2e-166 587.8 458 66.8
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 7.2e-166 587.8 470 66.8
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 9.4e-166 587.4 460 68.0
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 1.6e-165 586.6 470 67.9
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 7.9e-165 584.3 381 78.0
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 1.0e-164 583.9 463 65.7
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 1.4e-164 583.6 361 78.7
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 1.8e-164 583.2 471 66.0
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 6.7e-164 581.3 466 69.1
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 7.4e-163 577.8 458 67.2
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 7.4e-163 577.8 463 67.4
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 6.3e-162 574.7 464 66.6
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 6.3e-162 574.7 378 75.7
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 8.2e-162 574.3 374 76.2
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 9.1e-161 570.9 460 69.1
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.6e-160 570.1 352 79.0
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 2.0e-160 569.7 461 70.1
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.0e-159 567.4 465 67.7
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-159 567.0 460 64.8
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 6.5e-159 564.7 431 68.9
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 8.5e-159 564.3 466 63.5
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 5.5e-158 561.6 525 59.2
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 1.6e-157 560.1 469 67.6
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 2.1e-157 559.7 469 67.8
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 1.8e-156 556.6 496 64.1
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 2.3e-156 556.2 487 61.2
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 2.3e-156 556.2 332 81.3
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 8.8e-156 554.3 478 65.5
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 5.7e-155 551.6 453 66.2
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 9.7e-155 550.8 479 61.8
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 4.8e-154 548.5 485 64.9
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 8.5e-151 537.7 454 63.4
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 1.6e-149 533.5 344 75.9
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 8.0e-149 531.2 480 60.0
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 8.8e-148 527.7 457 60.0
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 2.6e-147 526.2 459 61.7
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 2.4e-145 519.6 402 66.9
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 1.0e-143 514.2 274 90.1
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 5.0e-143 511.9 466 64.2
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 4.2e-142 508.8 331 74.0
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 9.5e-142 507.7 279 86.4
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 6.1e-141 505.0 503 58.1
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 6.3e-138 495.0 504 56.3
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 1.9e-134 483.4 331 71.0
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 2.5e-134 483.0 351 67.8
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.2e-131 474.2 446 58.1
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.2e-129 466.1 383 65.8
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 2.7e-128 463.0 335 69.3
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.6e-125 453.8 390 64.9
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 1.4e-121 440.7 419 55.4
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 6.0e-120 435.3 560 51.1
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.7e-119 433.7 435 57.5
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.9e-119 432.6 360 63.3
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.2e-115 421.0 469 52.9
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 7.1e-113 411.8 427 56.0
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 1.0e-103 381.3 336 58.9
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 8.7e-103 378.3 352 55.1
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.5e-99 367.5 391 53.2
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.4e-99 366.3 289 66.1
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.1e-81 308.1 467 47.5
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.5e-75 287.7 282 56.0
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.0e-58 231.9 467 37.5
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 5.1e-55 219.5 389 37.0
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 4.0e-39 166.8 120 72.5
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.3e-37 161.8 248 42.7
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.2e-35 155.2 373 33.2
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 7.5e-30 136.0 81 80.2
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 1.8e-28 131.3 136 55.1
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 7.5e-22 109.4 121 54.5
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.3e-21 105.9 139 45.3
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 3.1e-20 104.0 186 40.9
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 2.0e-19 101.3 110 53.6
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.7e-18 98.2 198 39.9
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 4.6e-11 73.6 199 26.1
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 5.0e-10 70.1 205 25.9
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 6.6e-10 69.7 199 26.1
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 8.6e-10 69.3 195 26.2
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 1.5e-09 68.6 199 25.6
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.5e-09 68.6 199 25.6
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.5e-09 68.6 199 25.6
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 1.5e-09 68.6 199 25.6
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 2.8e-08 64.3 199 23.6
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 2.8e-08 64.3 200 24.5
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 6.2e-08 63.2 202 23.3
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 8.0e-08 62.8 199 25.6
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 1.4e-07 62.0 194 24.7
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 1.5e-06 58.5 203 22.7
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 1.5e-06 58.5 199 23.6
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 2.6e-06 57.8 182 30.8
Medtr4g087670 Medicago truncatula HOM05D004480 ORTHO05D263555 7.5e-06 56.2 53 49.1


User provided reference genes

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