Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 2522.7 1269 100.0
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 2464.5 1274 98.0
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 2174.4 1274 85.4
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1929.5 1205 82.9
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1708.7 1289 68.9
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1696.8 1287 67.4
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1694.5 1254 68.9
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1643.2 1281 65.7
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1613.2 1293 64.4
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1607.0 1288 64.1
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1600.9 1293 62.8
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1588.2 1290 63.3
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1588.2 1265 63.9
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1583.2 1294 62.8
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1580.5 1291 63.0
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1577.8 1309 62.8
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1574.3 1296 62.9
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1573.1 1306 62.8
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1571.6 1293 61.1
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1569.3 1294 62.8
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1562.7 1288 62.1
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1560.4 1287 63.2
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1558.9 1284 62.4
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1554.7 1301 61.2
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1552.3 1355 60.1
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1526.9 1302 61.8
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 0.0e+00 1525.4 909 85.4
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1522.7 1317 60.7
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1522.7 1312 60.1
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1522.3 1284 60.4
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1521.1 1287 61.1
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1520.4 1287 60.5
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1518.8 1287 60.5
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1513.8 1322 59.6
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1511.9 1104 69.2
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1510.0 1287 60.4
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1507.7 1288 60.3
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1505.3 1350 58.3
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1502.6 1291 59.6
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1500.7 1290 61.1
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1498.4 1291 59.6
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1497.6 1290 60.1
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1494.2 1279 60.4
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1494.2 1287 59.6
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1485.7 1289 61.5
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1484.9 1290 58.8
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1482.2 1289 59.6
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1482.2 1288 59.2
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1481.5 1240 61.9
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1480.3 1293 58.9
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1478.4 1304 59.0
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1478.0 1297 57.4
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1475.7 1290 59.6
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1475.7 1276 60.8
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1473.4 1303 59.4
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1472.2 1289 58.7
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1471.8 1071 69.6
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1470.3 1290 58.1
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1468.8 1287 59.5
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1466.8 1284 58.8
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1459.1 1379 56.3
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1459.1 1289 58.9
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1447.2 1153 63.8
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1446.0 1293 57.7
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1441.8 1288 58.9
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1438.3 1412 56.0
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1436.8 1292 57.4
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1436.4 1260 60.0
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1435.2 1293 57.5
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1434.1 1288 57.5
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1431.8 1293 57.5
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1429.5 1316 55.9
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1428.7 1297 57.7
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1427.9 1294 57.0
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1425.6 1294 57.4
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1424.8 1293 55.9
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1422.1 1294 57.3
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1421.4 1297 57.4
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1419.1 1291 56.9
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1418.7 1288 56.7
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1417.5 1288 56.7
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1415.2 1187 62.3
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1414.8 1292 57.0
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1406.7 1309 56.2
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1406.3 1104 65.8
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1377.1 1112 63.8
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1370.9 1282 56.4
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1358.2 1285 53.9
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1332.8 1106 62.6
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1325.5 1300 54.6
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1323.1 1400 52.4
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1310.0 1292 54.1
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1305.8 1291 55.5
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1295.0 1323 53.0
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1287.3 1284 52.2
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1281.2 1257 54.2
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1255.4 1286 50.9
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1242.6 1272 51.3
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1213.4 1301 50.7
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1208.0 1114 58.8
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1204.9 1069 57.4
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1194.1 1153 57.2
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1132.5 1390 46.1
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 3.1e-299 1032.3 645 82.5
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 7.1e-272 941.4 647 70.5
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.9e-261 906.7 845 56.9
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 2.0e-258 896.7 1340 38.4
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 6.2e-252 875.2 1372 39.5
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 9.4e-240 834.7 1187 40.5
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 4.8e-228 795.8 756 55.7
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 3.4e-205 719.9 1281 35.8
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 3.2e-195 686.8 920 42.4
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 1.6e-167 594.7 568 53.5
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 5.6e-160 569.7 348 83.3
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 2.9e-148 530.8 378 71.2
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 1.2e-133 482.3 505 55.8
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 3.3e-120 437.6 323 67.5
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 5.1e-113 413.7 458 49.6
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 9.7e-104 382.9 222 77.9
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.7e-95 354.4 416 46.9
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.1e-94 351.3 474 43.7
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 1.5e-91 342.4 208 79.8
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 1.2e-90 339.3 1072 26.0
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 5.2e-81 307.4 208 69.7
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.0e-80 305.4 209 69.9
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 3.5e-77 294.7 163 82.8
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 8.0e-74 283.5 1048 24.8
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 4.1e-70 271.2 146 83.6
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 2.5e-67 261.9 289 47.8
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.7e-61 241.9 189 58.7
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 9.6e-51 206.8 975 23.3
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 4.9e-47 194.5 167 57.5
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 8.4e-47 193.7 757 25.5
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 8.7e-44 183.7 143 69.2
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 3.6e-42 178.3 212 43.4
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 2.3e-36 159.1 119 66.4
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 8.7e-36 157.1 143 55.2
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 7.4e-35 154.1 121 60.3
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 3.6e-34 151.8 209 41.1
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.1e-33 150.2 114 57.0
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.4e-33 149.8 91 80.2
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.2e-32 146.7 114 75.4
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 1.9e-30 139.4 179 41.9
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 3.2e-30 138.7 378 29.9
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 2.7e-29 135.6 106 79.2
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 7.4e-27 127.5 146 46.6
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.4e-22 113.2 86 62.8
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 4.2e-22 111.7 207 34.3
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.0e-20 107.1 88 60.2
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 5.7e-19 101.3 74 67.6
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 1.6e-18 99.8 69 62.3
Sopen08g010030 Solanum pennellii HOM05D000004 ORTHO05D000034 8.2e-18 97.4 66 74.2
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 1.8e-17 96.3 200 34.5
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 8.5e-15 87.4 202 29.7
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 5.5e-14 84.7 87 52.9
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 3.6e-13 82.0 57 59.6
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 6.1e-13 81.3 65 55.4
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 8.2e-10 70.9 81 66.7
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 1.1e-09 70.5 86 47.7
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 9.0e-09 67.4 45 71.1
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 3.4e-08 65.5 41 65.9
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 1.1e-06 60.5 73 61.6


User provided reference genes

Program Settings