Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 0.0e+00 1251.5 624 100.0
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 0.0e+00 1160.2 575 98.8
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 0.0e+00 1135.9 575 97.0
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 0.0e+00 1133.6 618 90.9
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 0.0e+00 1115.1 613 90.0
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 0.0e+00 1095.5 611 88.2
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 0.0e+00 1091.3 613 89.1
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 9.4e-302 1039.6 628 81.8
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 4.0e-300 1034.2 612 83.2
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 1.2e-299 1032.7 613 82.2
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 3.6e-293 1011.1 607 80.6
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 3.6e-293 1011.1 607 80.6
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 3.0e-292 1008.1 580 83.3
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 4.0e-292 1007.7 611 81.5
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 4.4e-291 1004.2 611 81.2
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 9.8e-291 1003.0 586 81.7
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 6.3e-290 1000.3 575 83.1
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 7.0e-289 996.9 609 79.0
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.6e-288 995.7 580 82.8
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 2.0e-288 995.3 585 82.2
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 2.7e-288 995.0 593 80.8
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 3.5e-288 994.6 612 78.8
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 1.0e-287 993.0 573 82.5
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 1.3e-287 992.6 609 78.8
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 5.0e-287 990.7 634 76.2
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 1.1e-286 989.6 583 81.5
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 1.1e-286 989.6 583 81.3
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 1.1e-286 989.6 585 81.5
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 1.5e-286 989.2 575 81.2
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 2.5e-286 988.4 588 81.5
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 5.5e-286 987.3 602 79.1
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 7.2e-286 986.9 582 80.6
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 9.5e-286 986.5 613 77.2
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 2.8e-285 984.9 584 81.2
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 2.8e-285 984.9 609 77.8
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 3.6e-285 984.6 611 78.1
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 3.6e-285 984.6 616 77.6
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 8.0e-285 983.4 653 75.5
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.0e-284 983.0 602 79.2
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 3.0e-284 981.5 592 80.4
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 3.0e-284 981.5 592 80.2
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 5.2e-284 980.7 626 76.8
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 8.9e-284 979.9 593 78.9
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.2e-283 979.5 611 77.4
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 1.2e-283 979.5 592 79.7
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 3.4e-283 978.0 589 79.8
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 3.4e-283 978.0 626 76.2
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 3.4e-283 978.0 637 75.7
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 5.7e-283 977.2 611 77.3
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 5.7e-283 977.2 604 78.0
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.3e-282 976.1 599 78.6
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.8e-282 974.9 627 76.4
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 3.7e-282 974.5 585 79.8
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 4.9e-282 974.2 595 79.5
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 1.1e-281 973.0 581 80.6
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 1.8e-281 972.2 624 75.6
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 9.2e-281 969.9 593 79.1
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 2.0e-280 968.8 575 81.7
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 4.5e-280 967.6 637 74.3
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 4.5e-280 967.6 607 78.1
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 7.8e-280 966.8 569 80.7
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 1.0e-279 966.5 607 77.6
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 2.9e-279 964.9 593 78.2
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 2.9e-279 964.9 586 78.0
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 2.9e-279 964.9 599 77.3
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 3.8e-279 964.5 563 82.1
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 5.0e-279 964.1 569 80.5
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 8.6e-279 963.4 581 78.8
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.1e-278 963.0 608 76.3
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 1.1e-278 963.0 584 79.1
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 3.3e-278 961.4 569 80.8
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 9.5e-278 959.9 581 78.8
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 9.5e-278 959.9 598 76.6
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.2e-277 959.5 559 81.8
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.0e-276 956.4 581 78.5
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 2.3e-276 955.3 620 74.2
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 2.3e-276 955.3 587 78.9
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 5.2e-276 954.1 580 77.9
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 5.2e-276 954.1 584 77.6
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 1.5e-275 952.6 616 74.4
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 2.6e-275 951.8 616 73.7
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 2.6e-275 951.8 577 79.2
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 3.4e-275 951.4 609 76.2
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.4e-275 951.0 601 76.9
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 1.3e-274 949.5 584 77.1
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 2.9e-274 948.3 582 76.1
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 3.7e-274 948.0 581 78.0
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 4.9e-274 947.6 618 73.6
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 4.9e-274 947.6 711 68.9
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 8.3e-274 946.8 583 77.7
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 8.3e-274 946.8 528 85.4
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 3.2e-273 944.9 619 73.3
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 5.4e-273 944.1 583 77.5
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 7.0e-273 943.7 613 74.7
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 9.2e-273 943.3 574 78.2
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 1.6e-272 942.6 574 78.2
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 2.0e-272 942.2 583 77.5
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 4.6e-272 941.0 531 83.4
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 1.7e-271 939.1 543 81.2
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 3.0e-271 938.3 545 80.6
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 8.6e-271 936.8 591 78.2
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 5.2e-268 927.5 551 79.3
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 5.1e-263 911.0 615 72.7
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 4.7e-261 904.4 614 73.0
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 4.7e-261 904.4 617 73.3
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 1.1e-260 903.3 621 71.8
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 1.4e-257 892.9 573 75.4
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 1.6e-256 889.4 575 74.1
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 5.6e-254 880.9 532 77.1
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 1.7e-250 869.4 618 69.7
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 4.2e-249 864.8 551 74.6
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 2.3e-247 859.0 593 72.2
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 2.8e-245 852.0 578 72.1
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 1.8e-244 849.4 583 73.6
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 7.1e-241 837.4 495 80.2
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 2.3e-231 805.8 448 85.3
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 9.6e-230 800.4 448 85.0
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 1.6e-229 799.7 586 65.9
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 2.9e-226 788.9 537 72.1
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 5.5e-225 784.6 439 84.1
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 3.9e-223 778.5 570 65.8
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 6.7e-223 777.7 547 68.0
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 1.3e-205 720.3 517 67.7
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.0e-195 686.4 491 69.2
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 8.2e-189 664.5 454 70.0
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 3.5e-179 632.5 538 57.8
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 1.7e-173 613.6 361 79.8
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.6e-163 580.5 576 56.8
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 1.6e-163 580.5 344 79.1
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 4.6e-147 525.8 366 71.6
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 1.6e-144 517.3 438 62.1
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 2.3e-143 513.5 561 49.6
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 1.2e-142 511.1 547 53.0
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 9.2e-140 501.5 278 84.9
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 7.8e-139 498.4 280 83.9
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 3.8e-133 479.6 314 74.8
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 5.1e-114 416.0 574 43.6
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 1.5e-110 404.4 288 68.1
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.5e-94 351.3 643 35.6
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 1.7e-88 331.3 263 65.8
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 1.7e-88 331.3 184 81.5
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 1.6e-83 314.7 188 77.1
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 7.4e-81 305.8 179 82.1
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 2.8e-80 303.9 592 36.3
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.4e-79 301.6 179 79.9
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 2.0e-78 297.7 499 37.7
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 1.5e-76 291.6 165 81.8
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 3.3e-73 280.4 585 33.3
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 1.1e-68 265.4 610 33.4
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.8e-66 258.1 321 46.4
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.1e-63 248.8 140 81.4
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 3.8e-61 240.4 183 65.6
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.8e-58 231.5 599 30.7
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.2e-50 203.4 117 80.3
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 1.3e-48 198.7 120 83.3
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 1.4e-42 178.7 107 78.5
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.8e-42 178.3 98 86.7
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.8e-42 176.4 120 72.5
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 5.4e-39 166.8 155 56.1
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.0e-34 150.6 108 70.4
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 7.8e-30 136.3 77 79.2
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 6.6e-29 133.3 91 70.3
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 4.7e-27 127.1 137 48.2
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 8.1e-27 126.3 65 90.8
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 1.1e-26 125.9 67 86.6
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 1.1e-20 105.9 64 81.2
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 1.6e-11 75.5 120 41.7
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.8e-11 73.9 54 70.4
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 1.8e-10 72.0 58 62.1
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.7e-08 65.5 61 57.4
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 7.1e-07 60.1 38 63.2
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 1.6e-06 58.9 68 48.5


User provided reference genes

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