Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 5.3e-290 1000.3 522 100.0
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 5.9e-289 996.9 522 99.6
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 2.6e-276 954.9 525 95.2
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 2.1e-262 908.7 529 88.5
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.9e-210 736.1 431 85.2
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 4.6e-209 731.5 431 84.2
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 1.4e-178 630.2 431 74.9
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 2.1e-169 599.7 486 63.8
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.3e-166 590.5 484 62.0
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.7e-166 590.1 485 63.1
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 5.0e-163 578.6 497 60.6
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 6.5e-163 578.2 485 61.0
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.9e-162 576.6 485 60.8
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 1.6e-161 573.5 430 66.5
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 4.7e-161 572.0 493 59.6
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 6.7e-160 568.2 484 57.9
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 4.4e-159 565.5 484 60.3
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 2.8e-158 562.8 484 58.1
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 6.3e-158 561.6 484 59.5
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 6.3e-158 561.6 484 57.6
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 4.1e-157 558.9 482 59.1
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 5.3e-157 558.5 484 58.7
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 7.0e-157 558.1 491 60.9
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 7.0e-157 558.1 487 59.8
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.5e-156 557.0 491 57.8
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.0e-156 556.6 434 64.5
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 5.0e-155 552.0 486 59.3
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 1.9e-154 550.1 544 54.8
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 3.2e-154 549.3 489 58.5
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 9.4e-154 547.7 433 63.0
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 2.7e-153 546.2 489 59.3
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 3.6e-153 545.8 485 58.1
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 3.6e-153 545.8 490 57.6
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 4.7e-153 545.4 484 58.3
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 4.7e-153 545.4 504 57.3
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 8.0e-153 544.7 484 56.8
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 2.3e-152 543.1 492 57.5
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 6.7e-152 541.6 483 60.0
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.3e-151 539.3 488 56.4
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 5.7e-151 538.5 493 56.0
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.7e-150 537.0 488 55.5
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.8e-150 536.2 488 55.9
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.8e-150 536.2 483 57.6
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 4.8e-150 535.4 483 57.3
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 8.2e-150 534.6 483 58.0
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 3.1e-149 532.7 474 57.8
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 5.3e-149 531.9 484 58.9
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 5.3e-149 531.9 553 53.0
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 4.5e-148 528.9 487 55.9
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 5.9e-148 528.5 491 57.0
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.2e-147 526.6 485 56.3
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 2.9e-147 526.2 483 56.1
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 6.5e-147 525.0 424 61.6
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 8.5e-147 524.6 483 56.3
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 9.4e-146 521.2 484 56.0
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 2.7e-145 519.6 477 56.6
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 6.1e-145 518.5 482 55.4
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.0e-144 517.7 435 61.4
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.8e-144 516.9 483 56.1
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 4.0e-144 515.8 483 55.7
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 5.2e-144 515.4 485 55.7
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 1.2e-143 514.2 618 47.9
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 1.5e-143 513.8 482 55.0
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 5.7e-143 511.9 486 54.9
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 7.5e-143 511.5 490 54.3
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 7.5e-143 511.5 490 54.3
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 9.7e-143 511.1 520 53.7
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 9.7e-143 511.1 489 55.6
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 9.7e-143 511.1 493 55.4
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.3e-142 510.8 441 58.7
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.3e-142 510.8 482 55.2
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.2e-142 510.0 494 54.7
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 2.8e-142 509.6 424 60.1
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 2.8e-142 509.6 485 54.6
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 6.3e-142 508.4 496 54.8
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.1e-141 507.7 424 60.8
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 3.1e-141 506.1 486 54.7
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 3.1e-141 506.1 432 58.6
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 3.1e-141 506.1 444 57.4
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 3.1e-141 506.1 480 55.8
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 4.1e-141 505.8 485 54.6
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 3.5e-140 502.7 497 52.3
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 5.9e-140 501.9 445 58.9
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.0e-139 501.1 435 58.6
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 6.5e-139 498.4 492 54.7
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 2.5e-138 496.5 483 54.0
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.6e-137 493.8 485 54.2
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.7e-137 493.0 481 52.6
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.4e-136 490.7 472 56.8
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 4.0e-136 489.2 485 52.0
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 6.8e-136 488.4 482 53.1
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 8.8e-136 488.0 484 51.0
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.5e-135 487.3 433 59.4
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 5.7e-135 485.3 486 51.4
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.2e-134 483.4 445 56.2
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.1e-133 481.1 484 50.2
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 1.4e-133 480.7 424 58.3
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 4.1e-133 479.2 482 51.2
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 9.1e-133 478.0 444 55.4
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.2e-132 477.6 444 55.0
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.6e-132 477.2 433 56.6
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 3.5e-132 476.1 445 55.1
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 4.5e-132 475.7 482 52.5
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 1.0e-131 474.6 433 55.4
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 1.0e-131 474.6 446 54.7
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 1.0e-131 474.6 446 54.7
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.0e-131 474.6 447 55.5
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.0e-131 474.6 454 53.7
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.0e-131 474.6 454 54.4
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.3e-131 474.2 445 55.5
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-131 474.2 446 54.5
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.7e-131 473.8 485 51.8
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.7e-131 473.8 485 51.8
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.7e-131 473.8 485 51.8
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.7e-131 473.8 558 48.4
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 8.6e-131 471.5 486 52.5
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 2.5e-130 469.9 486 52.3
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 5.5e-130 468.8 433 55.7
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.5e-130 468.8 454 54.2
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.1e-129 466.8 454 54.2
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 2.8e-129 466.5 450 55.1
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 3.6e-129 466.1 448 55.1
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 3.6e-129 466.1 433 52.9
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 4.7e-129 465.7 425 56.5
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.4e-128 464.2 453 52.1
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.0e-128 462.6 453 52.5
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 5.2e-128 462.2 470 52.1
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 5.2e-128 462.2 468 52.1
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 8.9e-128 461.5 421 56.3
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 2.6e-127 459.9 448 54.0
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.6e-127 459.9 432 54.9
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 2.4e-125 453.4 346 65.0
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 2.0e-124 450.3 488 51.0
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.3e-123 447.6 435 52.6
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 5.6e-122 442.2 501 49.9
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 2.1e-121 440.3 492 49.4
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 2.6e-119 433.3 417 53.5
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.1e-117 427.9 370 58.6
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 2.7e-116 423.3 375 57.6
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.0e-115 421.4 425 51.5
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.6e-111 406.8 370 56.5
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.2e-110 403.7 367 56.1
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 1.4e-109 401.0 417 51.8
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 5.4e-109 399.1 419 50.1
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 4.9e-102 375.9 404 51.0
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.0e-99 368.2 326 57.4
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 2.4e-93 347.1 333 55.3
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.4e-79 300.1 221 65.2
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 8.1e-73 278.9 221 60.6
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.6e-68 264.6 295 51.5
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 1.9e-66 257.7 230 57.0
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.0e-63 247.7 245 54.3
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.0e-62 245.4 267 50.6
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 3.9e-59 233.4 339 40.7
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 6.9e-56 222.6 331 41.1
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 2.2e-54 217.6 263 47.1
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 2.9e-54 217.2 117 92.3
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 3.7e-49 200.3 457 33.5
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 6.5e-46 189.5 446 33.9
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 1.2e-36 158.7 265 40.0
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.8e-33 147.5 195 44.1
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 4.0e-27 127.1 656 22.6
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.2e-27 126.7 133 51.1
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 2.0e-26 124.8 111 57.7
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 3.4e-26 124.0 314 29.3
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 4.8e-25 120.2 99 57.6
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-20 105.5 124 46.8
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.6e-15 88.6 100 48.0
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.5e-15 87.4 109 48.6
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.3e-11 74.7 47 66.0
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 2.6e-10 71.2 385 22.9
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 7.0e-08 63.2 52 59.6
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 3.9e-06 57.4 35 74.3


User provided reference genes

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