Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.3e-156 554.7 292 100.0
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.0e-145 519.2 298 93.0
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 2.0e-145 519.2 298 93.0
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 1.7e-144 516.2 292 94.2
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 4.2e-143 511.5 299 91.3
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 8.5e-112 407.5 303 75.6
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 9.7e-108 394.0 298 74.8
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 4.2e-103 378.6 206 97.1
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.3e-101 372.9 303 71.0
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 3.3e-100 369.0 291 72.9
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 1.3e-88 330.5 302 63.2
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.8e-85 320.1 284 66.9
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 5.2e-85 318.5 300 63.7
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 4.4e-84 315.5 301 61.1
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 2.8e-83 312.8 287 63.8
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 6.3e-83 311.6 292 61.0
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 1.1e-82 310.8 299 61.5
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 1.4e-82 310.5 298 62.8
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 1.4e-82 310.5 292 61.0
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 2.4e-82 309.7 299 61.5
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 1.6e-81 307.0 293 61.8
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 1.6e-81 307.0 279 63.4
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 2.7e-81 306.2 297 60.3
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 1.0e-80 304.3 290 62.4
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 2.3e-80 303.1 262 61.8
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 6.6e-80 301.6 285 62.1
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 1.1e-79 300.8 293 59.7
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.5e-79 300.4 280 62.5
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 1.9e-79 300.1 290 61.4
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 2.5e-79 299.7 259 65.6
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 2.5e-79 299.7 291 62.2
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 2.5e-79 299.7 296 60.8
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 3.3e-79 299.3 294 60.2
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 4.3e-79 298.9 294 60.2
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 4.3e-79 298.9 282 62.4
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 9.5e-79 297.7 288 60.1
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 1.2e-78 297.4 292 61.3
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 2.1e-78 296.6 292 61.0
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 8.0e-78 294.7 251 64.5
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.8e-77 293.5 293 59.4
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 4.0e-77 292.4 293 59.4
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 4.0e-77 292.4 293 59.0
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.2e-76 290.8 290 60.7
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 1.5e-76 290.4 262 64.9
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 9.8e-76 287.7 266 62.8
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 2.2e-75 286.6 290 59.0
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 3.7e-75 285.8 275 60.7
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 4.9e-75 285.4 264 62.5
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 1.8e-74 283.5 292 56.8
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 1.8e-74 283.5 282 60.6
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 3.2e-74 282.7 267 61.4
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 5.4e-74 282.0 279 57.0
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 7.0e-74 281.6 260 63.8
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 7.0e-74 281.6 292 58.2
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 7.0e-74 281.6 292 58.2
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 7.0e-74 281.6 292 58.2
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 1.6e-73 280.4 257 60.7
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 5.9e-73 278.5 264 61.4
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 2.3e-72 276.6 267 60.3
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 2.3e-72 276.6 276 58.3
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 5.0e-72 275.4 265 60.4
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 6.6e-72 275.0 295 55.6
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.5e-71 273.9 269 59.1
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 1.5e-71 273.9 262 61.8
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.9e-71 273.5 284 58.1
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 3.3e-71 272.7 290 56.6
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 4.3e-71 272.3 303 56.4
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 7.3e-71 271.6 291 57.0
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 2.1e-70 270.0 299 54.5
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 2.8e-70 269.6 264 59.5
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 1.0e-69 267.7 269 57.2
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 2.3e-69 266.5 302 55.6
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 4.0e-69 265.8 288 55.2
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 6.8e-69 265.0 289 55.4
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 8.9e-69 264.6 296 54.4
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 8.9e-69 264.6 272 58.5
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 1.2e-68 264.2 278 59.0
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 2.6e-68 263.1 262 59.2
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.4e-68 262.7 257 58.0
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 4.4e-68 262.3 257 58.0
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 5.8e-68 261.9 281 54.8
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 5.8e-68 261.9 283 56.5
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 7.5e-68 261.5 292 54.5
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 7.5e-68 261.5 269 58.0
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 7.5e-68 261.5 281 54.8
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 7.5e-68 261.5 300 53.7
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 1.3e-67 260.8 276 55.8
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 3.7e-67 259.2 293 54.6
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 4.9e-67 258.8 292 54.1
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 4.9e-67 258.8 289 55.7
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 6.4e-67 258.5 289 54.0
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 6.4e-67 258.5 277 57.8
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 1.4e-66 257.3 298 55.4
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 1.4e-66 257.3 256 55.9
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.4e-66 257.3 251 58.6
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 3.2e-66 256.1 250 58.8
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.4e-66 255.4 241 59.8
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 7.0e-66 255.0 291 54.0
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 7.0e-66 255.0 241 59.8
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 9.2e-66 254.6 262 56.1
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.2e-65 254.2 241 59.8
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 1.2e-65 254.2 270 56.7
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.6e-65 253.8 241 59.3
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 2.0e-65 253.4 290 55.2
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 6.0e-65 251.9 301 53.5
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 7.8e-65 251.5 290 54.8
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.7e-64 250.4 288 55.2
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 3.0e-64 249.6 248 59.7
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 3.9e-64 249.2 242 61.2
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 3.9e-64 249.2 287 54.4
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 5.0e-64 248.8 287 54.4
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.1e-63 247.7 288 54.9
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 2.5e-63 246.5 296 55.4
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 8.1e-62 241.5 282 52.5
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 3.1e-61 239.6 299 51.5
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 3.1e-61 239.6 286 52.8
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 3.1e-61 239.6 262 53.8
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 5.2e-61 238.8 258 55.0
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.0e-60 236.9 298 50.0
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.7e-59 232.6 286 51.0
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.4e-58 230.7 276 52.5
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 6.0e-57 225.3 292 51.0
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 6.0e-57 225.3 252 53.6
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 1.0e-56 224.6 287 48.8
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 1.5e-55 220.7 286 51.7
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 4.3e-55 219.2 281 49.5
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 6.2e-54 215.3 269 48.0
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 4.0e-53 212.6 258 51.9
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 5.2e-53 212.2 282 50.7
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.0e-52 210.3 280 48.2
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 2.6e-52 209.9 253 51.4
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 4.6e-49 199.1 286 46.9
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 4.6e-49 199.1 277 44.8
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 7.8e-49 198.4 193 56.5
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 1.5e-47 194.1 294 46.6
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 9.6e-47 191.4 204 52.9
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 2.8e-46 189.9 252 50.8
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 4.0e-45 186.0 267 45.7
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.2e-44 184.5 251 48.6
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 1.9e-39 167.2 322 44.4
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 9.6e-39 164.9 163 63.2
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.3e-38 164.5 175 59.4
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.3e-38 164.5 175 59.4
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 4.8e-38 162.5 164 56.1
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 3.1e-37 159.8 141 57.4
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 3.4e-36 156.4 140 57.9
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 4.5e-36 156.0 291 40.9
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 7.6e-36 155.2 246 41.5
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 9.9e-36 154.8 185 49.2
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 1.3e-35 154.5 282 39.4
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 1.6e-33 147.5 269 41.3
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 4.6e-33 146.0 289 38.1
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 3.9e-32 142.9 153 53.6
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.5e-31 141.0 144 55.6
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.9e-31 140.6 179 53.6
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 2.5e-31 140.2 183 45.4
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 8.1e-30 135.2 195 49.7
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 8.1e-30 135.2 243 41.6
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 8.4e-27 125.2 205 41.0
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 1.9e-26 124.0 288 35.4
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 3.2e-26 123.2 124 51.6
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 2.1e-22 110.5 294 32.3
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 5.3e-21 105.9 80 67.5
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 3.4e-20 103.2 72 72.2
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 4.2e-18 96.3 231 37.2
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 5.5e-18 95.9 165 40.0
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 3.5e-17 93.2 103 56.3
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.0e-16 91.7 159 44.7
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.5e-15 87.8 115 50.4
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.5e-15 87.0 102 45.1
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 7.4e-15 85.5 75 64.0
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.6e-14 84.3 196 35.2
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 5.3e-13 79.3 96 51.0
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.0e-11 75.1 74 54.1
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 2.5e-10 70.5 100 47.0
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 3.2e-10 70.1 278 27.3
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 6.1e-09 65.9 267 28.1
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 3.0e-08 63.5 62 61.3


User provided reference genes

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