Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 1.3e-157 559.7 282 100.0
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 3.3e-137 491.9 250 98.4
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 2.8e-136 488.8 250 97.6
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 1.2e-126 456.8 250 90.0
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 7.6e-126 454.1 250 90.0
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 2.8e-120 435.6 258 86.4
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 3.2e-116 422.2 252 86.1
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 1.2e-91 340.5 254 71.3
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 8.0e-91 337.8 241 71.8
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 8.8e-90 334.3 254 70.1
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 3.4e-89 332.4 231 71.9
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 5.7e-89 331.6 221 73.8
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 1.3e-88 330.5 219 78.1
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 4.8e-88 328.6 269 66.2
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 6.3e-88 328.2 225 72.9
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 1.4e-87 327.0 231 71.0
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 1.8e-87 326.6 233 73.0
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 2.4e-87 326.2 254 68.1
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 3.1e-87 325.9 257 67.7
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 4.1e-87 325.5 227 73.6
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 4.1e-87 325.5 226 72.6
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 9.1e-87 324.3 183 84.7
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 1.6e-86 323.6 229 72.5
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 4.5e-86 322.0 253 66.0
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 5.9e-86 321.6 228 71.5
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 7.7e-86 321.2 229 69.0
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 7.7e-86 321.2 237 68.8
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 8.5e-85 317.8 261 64.0
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 1.1e-84 317.4 191 79.6
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 1.1e-84 317.4 266 65.0
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 1.5e-84 317.0 231 72.3
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 1.9e-84 316.6 217 73.7
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 2.5e-84 316.2 244 69.7
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 3.2e-84 315.8 265 62.6
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 4.2e-84 315.5 248 65.3
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 4.2e-84 315.5 224 71.4
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 4.2e-84 315.5 224 71.4
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 5.5e-84 315.1 199 74.9
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 5.5e-84 315.1 227 70.5
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 7.2e-84 314.7 272 62.1
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 9.4e-84 314.3 272 62.1
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 9.4e-84 314.3 259 66.4
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.2e-83 313.9 199 76.4
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 2.1e-83 313.2 223 71.3
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 2.1e-83 313.2 223 71.3
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 2.1e-83 313.2 228 70.2
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 2.1e-83 313.2 265 62.3
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 2.1e-83 313.2 262 63.0
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 2.1e-83 313.2 235 66.8
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 3.6e-83 312.4 223 71.3
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 3.6e-83 312.4 259 61.8
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 4.7e-83 312.0 265 62.3
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 4.7e-83 312.0 264 64.8
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 6.1e-83 311.6 252 66.3
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 6.1e-83 311.6 265 64.5
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 1.0e-82 310.8 258 66.3
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 1.0e-82 310.8 198 74.7
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 1.0e-82 310.8 230 67.4
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 1.4e-82 310.5 268 62.7
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 1.8e-82 310.1 250 65.6
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 2.3e-82 309.7 223 69.5
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 2.3e-82 309.7 223 69.5
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 2.3e-82 309.7 223 69.5
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 5.2e-82 308.5 272 61.8
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 5.2e-82 308.5 272 61.8
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 5.2e-82 308.5 227 69.2
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 5.2e-82 308.5 189 77.2
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 8.8e-82 307.8 230 68.7
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 8.8e-82 307.8 262 63.4
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 8.8e-82 307.8 266 62.0
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 1.2e-81 307.4 226 68.6
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 2.0e-81 306.6 274 62.0
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 2.6e-81 306.2 260 63.1
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 3.4e-81 305.8 221 69.2
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 3.4e-81 305.8 198 75.3
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 3.4e-81 305.8 260 62.7
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 3.4e-81 305.8 246 67.5
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 4.4e-81 305.4 264 64.0
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 5.7e-81 305.1 225 69.8
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 9.8e-81 304.3 252 65.5
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.3e-80 303.9 266 62.8
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 1.3e-80 303.9 222 68.9
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 1.7e-80 303.5 247 66.8
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 2.8e-80 302.8 197 73.1
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 1.8e-79 300.1 274 58.8
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 2.4e-79 299.7 248 65.7
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 3.1e-79 299.3 290 58.6
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 3.1e-79 299.3 255 63.1
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 9.1e-79 297.7 186 78.0
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 9.1e-79 297.7 218 69.3
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 2.9e-77 292.7 214 69.2
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 3.8e-77 292.4 223 68.2
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 1.6e-75 287.0 186 75.3
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 2.1e-75 286.6 173 79.8
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 1.0e-74 284.3 217 67.7
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 1.8e-74 283.5 223 66.4
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 4.0e-74 282.3 171 78.9
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 1.2e-73 280.8 291 55.3
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 5.7e-73 278.5 250 60.4
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 2.9e-72 276.2 258 57.8
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 5.6e-68 261.9 137 90.5
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 2.0e-65 253.4 222 61.7
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 9.8e-65 251.1 181 69.6
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 4.9e-64 248.8 219 59.8
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 1.5e-57 227.3 122 89.3
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 5.4e-55 218.8 184 62.5
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 8.1e-51 204.9 231 48.9
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 1.7e-48 197.2 206 50.5
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 7.8e-46 188.3 135 69.6
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 3.0e-45 186.4 201 52.2
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 3.9e-45 186.0 184 58.7
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 6.0e-38 162.2 123 61.0
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 1.3e-37 161.0 176 48.9
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 1.3e-32 144.4 110 70.0
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 2.4e-31 140.2 110 68.2
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 1.6e-30 137.5 71 88.7
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 3.5e-30 136.3 181 44.2
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 5.3e-26 122.5 61 90.2
Dinv15017 Davidia involucrata HOM05D006328 ORTHO05D007721 2.7e-22 110.2 128 51.6
Nn2g15764 Nelumbo nucifera HOM05D006328 ORTHO05D007721 5.6e-20 102.4 81 66.7
HanXRQChr17g0560491 Helianthus annuus HOM05D006328 ORTHO05D007721 1.5e-17 94.4 57 77.2
arahy.Tifrunner.gnm1.ann1.VB18ZC Arachis hypogaea HOM05D006328 ORTHO05D007721 1.0e-16 91.7 121 49.6
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 4.9e-16 89.4 50 78.0
VMungo0540G1370 Vigna mungo HOM05D006328 ORTHO05D007721 7.1e-15 85.5 78 57.7
arahy.Tifrunner.gnm1.ann1.C5G03I Arachis hypogaea HOM05D006328 ORTHO05D007721 1.8e-13 80.9 72 56.9
Hma1.2p1_0062F.1_g034160 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 1.5e-12 77.8 115 44.3
Sabra06G0010000 Salix brachista HOM05D006328 ORTHO05D007721 2.5e-12 77.0 103 46.6
Dinv08842 Davidia involucrata HOM05D006328 ORTHO05D007721 1.5e-09 67.8 45 73.3
Zm00001eb327220 Zea mays HOM05D006328 ORTHO05D007721 3.4e-09 66.6 62 54.8
arahy.Tifrunner.gnm1.ann1.RQ0K0U Arachis hypogaea HOM05D002734 ORTHO05D003035 6.1e-06 55.8 42 61.9


User provided reference genes

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