Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500242.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 1.6e-138 496.1 251 100.0
Solyc00g500277.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 1.6e-138 496.1 251 100.0
CAN.G1690.2 Capsicum annuum HOM05D007194 ORTHO05D009182 3.1e-126 455.3 251 93.6
CAN.G85.20 Capsicum annuum HOM05D007194 ORTHO05D009182 4.7e-119 431.4 251 89.6
CANSAT16G0047 Cannabis sativa HOM05D007194 ORTHO05D009182 1.1e-118 430.3 251 88.4
DCAR_032453 Daucus carota HOM05D007194 ORTHO05D009182 1.4e-118 429.9 251 88.8
RcHm_v2.0_MTg0498961 Rosa chinensis HOM05D007194 ORTHO05D009182 3.1e-118 428.7 251 88.4
HanXRQChr16g0504451 Helianthus annuus HOM05D007194 ORTHO05D009182 9.8e-117 423.7 243 89.3
HanXRQMTg0579111 Helianthus annuus HOM05D007194 ORTHO05D009182 9.8e-117 423.7 243 89.3
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.7e-116 422.9 232 92.7
Cfa021340 Carpinus fangiana HOM05D007194 ORTHO05D009182 2.2e-116 422.5 243 90.1
Gorai.001G165900 Gossypium raimondii HOM05D007194 ORTHO05D009182 3.7e-116 421.8 251 87.6
AT2G07771 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 6.4e-116 421.0 243 89.3
ATMG00900 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 6.4e-116 421.0 243 89.3
CARHR283160 Cardamine hirsuta HOM05D007194 ORTHO05D009182 8.3e-116 420.6 243 89.3
Lsat_1_v5_gn_7_100841 Lactuca sativa HOM05D007194 ORTHO05D009182 1.4e-115 419.9 240 89.2
Lsat_1_v5_gn_7_99901 Lactuca sativa HOM05D007194 ORTHO05D009182 1.4e-115 419.9 240 89.2
A04p09540 Brassica napus HOM05D007194 ORTHO05D009182 2.4e-115 419.1 243 88.9
BolSC28t60320H Brassica oleracea HOM05D007194 ORTHO05D009182 2.4e-115 419.1 243 88.9
BraSC48t46300Z Brassica rapa HOM05D007194 ORTHO05D009182 2.4e-115 419.1 243 88.9
SGA_v2.0_scaffold400G50840 Striga asiatica HOM05D007194 ORTHO05D009182 1.2e-114 416.8 240 90.0
Sp3g25540 Schrenkiella parvula HOM05D007194 ORTHO05D009182 2.1e-114 416.0 243 88.5
LjContig00315g0023372 Lotus japonicus HOM05D007194 ORTHO05D009182 6.0e-114 414.5 239 90.0
arahy.Tifrunner.gnm1.ann1.14Z8E4 Arachis hypogaea HOM05D007194 ORTHO05D009182 3.0e-113 412.1 239 89.5
arahy.Tifrunner.gnm1.ann1.F9VS0T Arachis hypogaea HOM05D007194 ORTHO05D009182 3.0e-113 412.1 239 89.5
arahy.Tifrunner.gnm1.ann1.SBV1ZL Arachis hypogaea HOM05D007194 ORTHO05D009182 3.0e-113 412.1 239 89.5
Lalb_Chr00c24g0406951 Lupinus albus HOM05D007194 ORTHO05D009182 3.3e-112 408.7 244 87.7
Aa31csc239G110 Aethionema arabicum HOM05D007194 ORTHO05D009182 4.3e-112 408.3 243 87.7
Sed0021793 Sechium edule HOM05D007194 ORTHO05D009182 1.6e-111 406.4 232 90.5
AL3G44600 Arabidopsis lyrata HOM05D007194 ORTHO05D009182 2.1e-111 406.0 232 89.7
Lalb_Chr17g0337381 Lupinus albus HOM05D007194 ORTHO05D009182 4.7e-111 404.8 244 86.5
Aqoxy3G01137 Aquilegia oxysepala HOM05D007194 ORTHO05D009182 1.8e-110 402.9 232 90.1
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.5e-109 399.8 222 90.1
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.5e-109 399.8 222 90.1
Dinv06723 Davidia involucrata HOM05D007194 ORTHO05D009182 1.7e-108 396.4 220 91.4
EL10Ac7g17455 Beta vulgaris HOM05D007194 ORTHO05D009182 2.2e-108 396.0 234 87.6
Lj2P1233T109 Lonicera japonica HOM05D007194 ORTHO05D009182 3.7e-108 395.2 219 91.3
Psat0s922g0240 Pisum sativum HOM05D007194 ORTHO05D009182 5.4e-107 391.3 228 89.0
SHI36846 Sapria himalayana HOM05D007194 ORTHO05D009182 5.4e-107 391.3 245 83.3
Nn1g09980 Nelumbo nucifera HOM05D007194 ORTHO05D009182 3.3e-104 382.1 212 91.5
Lsat_1_v5_gn_1_67041 Lactuca sativa HOM05D007194 ORTHO05D009182 1.3e-100 370.2 210 88.1
arahy.Tifrunner.gnm1.ann1.GM5VKV Arachis hypogaea HOM05D007194 ORTHO05D009182 1.7e-100 369.8 228 85.5
AT2G07681 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 5.1e-97 358.2 232 82.8
SHI36965 Sapria himalayana HOM05D007194 ORTHO05D009182 5.1e-97 358.2 213 85.4
TPR.G39619 Trifolium pratense HOM05D007194 ORTHO05D009182 3.3e-96 355.5 202 89.6
Lsat_1_v5_gn_4_20401 Lactuca sativa HOM05D007194 ORTHO05D009182 2.8e-95 352.4 201 87.1
Lsat_1_v5_gn_6_37840 Lactuca sativa HOM05D007194 ORTHO05D009182 8.1e-95 350.9 206 85.4
BolSC28t60390H Brassica oleracea HOM05D007194 ORTHO05D009182 1.4e-94 350.1 203 88.2
Sopen00g002730 Solanum pennellii HOM05D007194 ORTHO05D009182 2.4e-94 349.4 178 97.2
Lj5P380T4 Lonicera japonica HOM05D007194 ORTHO05D009182 9.0e-94 347.4 227 80.6
BraSC48t46335Z Brassica rapa HOM05D007194 ORTHO05D009182 1.4e-91 340.1 192 89.6
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.2e-90 337.0 203 85.7
Ah.10g028440 Amaranthus hybridus HOM05D007194 ORTHO05D009182 2.1e-90 336.3 197 87.8
Prupe.1G175300 Prunus persica HOM05D007194 ORTHO05D009182 7.9e-90 334.3 208 84.1
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.5e-88 329.3 203 83.7
BolSC28t60422H Brassica oleracea HOM05D007194 ORTHO05D009182 1.8e-86 323.2 192 88.0
SalBow1G0339 Salvia bowleyana HOM05D007194 ORTHO05D009182 4.5e-85 318.5 173 93.6
TWI15G0311 Tripterygium wilfordii HOM05D007194 ORTHO05D009182 6.4e-84 314.7 172 91.3
Sed0000988 Sechium edule HOM05D007194 ORTHO05D009182 1.4e-83 313.5 170 92.4
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.6e-82 310.1 209 80.4
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 7.9e-82 307.8 207 81.6
Eucgr.I01863 Eucalyptus grandis HOM05D007194 ORTHO05D009182 8.7e-81 304.3 243 70.4
Lj2P1235T102 Lonicera japonica HOM05D007194 ORTHO05D009182 8.7e-81 304.3 175 87.4
Lsat_1_v5_gn_5_17681 Lactuca sativa HOM05D007194 ORTHO05D009182 1.1e-75 287.3 189 81.0
ECA039G0021 Erigeron canadensis HOM05D007194 ORTHO05D009182 1.3e-71 273.9 156 86.5
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.5e-64 250.4 142 86.6
arahy.Tifrunner.gnm1.ann1.UX1VFS Arachis hypogaea HOM05D007194 ORTHO05D009182 1.3e-63 247.3 211 65.4
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.5e-61 240.4 129 92.2
EL10Ac8g19071 Beta vulgaris HOM05D007194 ORTHO05D009182 1.9e-59 233.4 139 84.2
HanXRQChr05g0135281 Helianthus annuus HOM05D007194 ORTHO05D009182 3.3e-56 222.6 129 88.4
TAR625G1253 Trochodendron aralioides HOM05D007194 ORTHO05D009182 3.1e-54 216.1 124 88.7
QL93p0053_0961 Quercus lobata HOM05D007194 ORTHO05D009182 7.7e-53 211.5 112 90.2
CAN.G1542.2 Capsicum annuum HOM05D007194 ORTHO05D009182 2.5e-51 206.5 118 85.6
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 7.9e-50 201.4 108 92.6
CAN.G889.9 Capsicum annuum HOM05D007194 ORTHO05D009182 1.1e-48 197.6 107 94.4
arahy.Tifrunner.gnm1.ann1.6A3TYM Arachis hypogaea HOM05D007194 ORTHO05D009182 1.3e-47 194.1 143 73.4
Lj1P486T6 Lonicera japonica HOM05D007194 ORTHO05D009182 3.8e-44 182.6 108 84.3
unitig_87.g27964 Utricularia gibba HOM05D007194 ORTHO05D009182 4.0e-41 172.6 106 85.8
ATR0693G113 Amborella trichopoda HOM05D007194 ORTHO05D009182 9.7e-40 167.9 98 83.7
CAN.G1134.4 Capsicum annuum HOM05D007194 ORTHO05D009182 1.3e-39 167.5 109 78.0
Ca_14744_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 8.2e-39 164.9 88 89.8
CAN.G1001.43 Capsicum annuum HOM05D000927 ORTHO05D000850 3.5e-37 159.5 77 97.4
CAN.G122.10 Capsicum annuum HOM05D007194 ORTHO05D009182 3.8e-36 156.0 75 97.3
BraSC48t46286Z Brassica rapa HOM05D007194 ORTHO05D009182 2.5e-35 153.3 99 83.8
SHI26663 Sapria himalayana HOM05D007194 ORTHO05D009182 2.5e-35 153.3 101 80.2
Gohir.A08G085962 Gossypium hirsutum HOM05D007194 ORTHO05D009182 5.5e-35 152.1 176 55.1
Glyma.19G075000 Glycine max HOM05D007194 ORTHO05D009182 2.7e-34 149.8 73 97.3
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 1.8e-33 147.1 72 94.4
CAN.G78.2 Capsicum annuum HOM05D007194 ORTHO05D009182 6.8e-33 145.2 68 100.0
ClCG10G007880 Citrullus lanatus HOM05D007194 ORTHO05D009182 1.5e-32 144.1 96 82.3
Haze_27474 Corylus avellana HOM05D007194 ORTHO05D009182 1.4e-30 137.5 182 41.8
Gohir.A02G088502 Gossypium hirsutum HOM05D007194 ORTHO05D009182 8.5e-28 128.3 69 87.0
Peaxi162Scf00174g01622 Petunia axillaris HOM05D000219 ORTHO05D000226 7.2e-27 125.2 60 98.3
Solyc12g035840.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 1.2e-26 124.4 69 88.4
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 1.6e-26 124.0 79 78.5
Manes.06G014501 Manihot esculenta HOM05D007194 ORTHO05D009182 2.4e-22 110.2 65 81.5
Nitab4.5_0000859g0090 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.5e-21 105.9 90 70.0
BraSC54t46378Z Brassica rapa HOM05D007194 ORTHO05D009182 5.2e-17 92.4 58 86.2
CAN.G380.6 Capsicum annuum HOM05D007194 ORTHO05D009182 2.0e-16 90.5 55 81.8
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 4.4e-16 89.4 52 86.5
SHI24634 Sapria himalayana HOM05D007194 ORTHO05D009182 3.7e-15 86.3 132 43.2
PGSC0003DMG400042571 Solanum tuberosum HOM05D007194 ORTHO05D009182 2.1e-10 70.5 44 81.8
SHI21961 Sapria himalayana HOM05D007194 ORTHO05D009182 2.8e-10 70.1 54 74.1
SHI49604 Sapria himalayana HOM05D007194 ORTHO05D009182 1.0e-09 68.2 37 91.9
Phvul.007G104600 Phaseolus vulgaris HOM05D007194 ORTHO05D009182 3.1e-09 66.6 46 76.1
Dinv00475 Davidia involucrata HOM05D007194 ORTHO05D009182 2.6e-08 63.5 35 88.6
Aqoxy4G01620 Aquilegia oxysepala HOM05D007194 ORTHO05D009182 3.7e-07 59.7 35 88.6


User provided reference genes

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