Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.4e-292 1008.8 499 100.0
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.4e-292 1008.8 499 100.0
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.4e-292 1008.8 499 100.0
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 1.2e-291 1005.7 499 99.8
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.9e-289 998.4 499 99.0
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 7.1e-284 979.9 499 98.2
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 4.6e-283 977.2 496 97.8
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 6.0e-283 976.9 498 97.8
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 1.9e-281 971.8 499 97.0
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 2.8e-280 968.0 499 96.8
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 2.8e-280 968.0 499 96.8
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 2.8e-280 968.0 499 96.8
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 2.8e-280 968.0 499 96.8
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 2.8e-280 968.0 499 96.8
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 4.7e-280 967.2 499 97.0
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 4.7e-280 967.2 499 97.0
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 4.7e-280 967.2 499 97.0
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.7e-280 967.2 499 97.0
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 6.2e-280 966.8 498 97.2
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 6.2e-280 966.8 495 97.4
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 1.4e-279 965.7 499 96.4
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 2.0e-278 961.8 495 96.8
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 1.4e-276 955.7 499 96.4
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 1.4e-276 955.7 499 96.4
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 3.2e-276 954.5 499 96.2
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 1.7e-274 948.7 499 95.8
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 3.0e-266 921.4 498 93.0
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 3.9e-266 921.0 457 99.8
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 3.3e-265 917.9 499 93.6
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 2.1e-256 888.6 500 91.4
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 2.0e-254 882.1 498 90.4
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 3.4e-254 881.3 498 90.4
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 5.1e-250 867.5 479 91.0
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 9.7e-249 863.2 489 90.6
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.8e-248 861.7 499 87.0
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.8e-247 859.0 496 87.7
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 1.3e-245 852.8 498 87.8
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 2.1e-243 845.5 457 93.7
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 7.2e-236 820.5 479 88.9
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 4.7e-235 817.8 474 89.5
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 3.6e-227 791.6 452 89.8
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 6.1e-227 790.8 495 84.2
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 4.1e-223 778.1 489 83.8
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.0e-221 773.5 455 88.6
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 1.0e-218 763.5 392 98.0
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 4.0e-218 761.5 391 98.0
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 3.7e-216 755.0 392 96.2
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 3.6e-211 738.4 462 83.1
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.3e-197 693.3 457 79.4
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 1.0e-194 683.7 355 95.8
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 6.4e-184 647.9 461 76.1
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 6.4e-176 621.3 318 95.9
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.1e-167 594.0 355 84.5
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 1.3e-165 587.0 297 99.7
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 7.3e-156 554.7 284 95.8
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 2.8e-155 552.7 317 87.7
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 1.2e-153 547.4 410 72.7
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 4.9e-152 542.0 284 94.4
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 7.4e-148 528.1 495 60.8
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 7.4e-148 528.1 365 76.2
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 3.2e-143 512.7 254 98.8
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 6.2e-139 498.4 254 96.9
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.7e-134 483.0 250 94.8
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 2.7e-134 483.0 254 94.5
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.1e-134 481.9 265 92.8
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.9e-127 460.3 274 84.7
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.9e-127 460.3 274 84.7
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 1.6e-118 430.6 583 47.3
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 5.9e-113 412.1 213 97.7
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 6.5e-112 408.7 222 95.0
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.2e-111 406.0 312 72.8
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 5.2e-109 399.1 235 85.1
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-105 387.9 355 62.5
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 4.5e-105 386.0 420 52.1
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 2.9e-104 383.3 498 49.2
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 6.5e-104 382.1 211 92.9
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 3.6e-102 376.3 278 72.7
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 3.6e-102 376.3 198 97.0
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.0e-102 375.2 189 96.8
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.0e-102 375.2 189 96.8
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.0e-102 375.2 189 96.8
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 7.5e-100 368.6 189 94.7
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 2.2e-99 367.1 189 94.7
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 1.7e-96 357.5 262 77.9
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 8.5e-96 355.1 432 53.5
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 8.8e-93 345.1 328 58.5
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 7.7e-89 332.0 321 58.6
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 1.2e-86 324.7 175 94.9
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 7.5e-84 315.5 197 80.7
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 2.8e-78 297.0 373 41.8
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.8e-77 294.3 159 92.5
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.4e-74 283.9 475 40.8
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 1.4e-66 258.1 132 98.5
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-65 255.0 422 44.3
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 3.4e-60 236.9 244 56.6
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 1.4e-58 231.5 183 67.8
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 1.9e-58 231.1 235 59.6
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 9.2e-58 228.8 118 97.5
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.2e-57 228.4 128 87.5
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 5.1e-56 223.0 134 76.1
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 2.1e-54 217.6 175 66.3
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 4.7e-54 216.5 138 82.6
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 6.8e-53 212.6 148 77.7
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.5e-52 211.5 137 81.8
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 1.4e-50 204.9 105 92.4
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 7.1e-50 202.6 95 100.0
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 3.5e-49 200.3 260 49.2
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 1.3e-48 198.4 94 98.9
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 2.1e-46 191.0 109 83.5
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 1.4e-45 188.3 153 69.3
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 2.0e-44 184.5 91 96.7
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.1e-42 178.7 165 61.2
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 4.2e-42 176.8 91 92.3
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 5.4e-42 176.4 197 52.3
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-41 175.3 122 73.0
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 6.0e-41 172.9 95 93.7
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 6.0e-41 172.9 99 84.8
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 3.9e-40 170.2 91 94.5
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 8.7e-40 169.1 84 96.4
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 1.9e-39 167.9 175 57.7
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 2.5e-39 167.5 156 60.9
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 3.1e-37 160.6 81 93.8
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 5.8e-36 156.4 89 84.3
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 7.6e-36 156.0 85 88.2
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 8.4e-35 152.5 92 81.5
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 2.4e-34 151.0 163 58.9
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.2e-34 150.2 78 91.0
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.2e-34 150.2 78 91.0
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 1.8e-32 144.8 106 71.7
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 7.4e-31 139.4 112 69.6
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 9.0e-29 132.5 129 60.5
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-28 132.1 80 80.0
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.3e-24 118.6 92 75.0
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.1e-24 116.7 76 77.6
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 9.6e-23 112.5 70 80.0
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.1e-22 111.3 76 73.7
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 4.8e-22 110.2 101 60.4
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 6.3e-22 109.8 108 53.7
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 2.4e-21 107.8 64 81.2
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 5.3e-21 106.7 53 90.6
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 3.4e-20 104.0 68 79.4
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 2.1e-17 94.7 47 97.9
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 4.8e-14 83.6 50 80.0
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 1.2e-12 79.0 48 83.3
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.9e-11 74.3 50 78.0
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.9e-11 74.3 36 91.7
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 4.2e-10 70.5 33 93.9
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 4.2e-10 70.5 46 76.1
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 2.7e-09 67.8 56 66.1
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.0e-08 65.9 50 66.0
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 3.9e-08 63.9 29 96.6
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 3.3e-07 60.8 27 100.0


User provided reference genes

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