Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 0.0e+00 1196.0 598 100.0
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 0.0e+00 1105.1 598 92.3
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 0.0e+00 1083.9 598 90.5
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 3.7e-271 937.9 593 78.9
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 1.5e-267 926.0 555 82.0
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 2.0e-264 915.6 588 80.4
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 2.6e-264 915.2 591 78.7
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 3.1e-262 908.3 552 78.3
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 1.7e-260 902.5 562 78.5
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 1.2e-258 896.3 558 77.4
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 2.7e-258 895.2 565 76.3
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 4.7e-258 894.4 554 78.3
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 4.7e-258 894.4 552 77.9
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 8.0e-258 893.6 577 76.4
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 1.0e-257 893.3 553 77.6
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 1.8e-257 892.5 586 75.6
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 8.8e-257 890.2 558 78.3
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 8.8e-257 890.2 588 73.6
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 1.2e-256 889.8 558 78.1
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 2.6e-256 888.6 592 75.3
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 2.2e-255 885.6 554 77.8
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 2.8e-255 885.2 539 80.1
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 5.4e-254 880.9 548 79.0
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 2.7e-253 878.6 554 76.4
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 3.8e-252 874.8 583 74.1
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 8.6e-252 873.6 554 75.8
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 1.5e-251 872.8 563 76.0
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 3.3e-251 871.7 563 76.0
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 7.2e-251 870.5 588 73.6
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 9.5e-251 870.2 558 76.2
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 2.8e-250 868.6 590 73.2
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 3.6e-250 868.2 563 76.4
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 8.0e-250 867.1 563 74.4
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 4.0e-249 864.8 644 67.4
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 6.8e-249 864.0 563 75.5
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 1.5e-248 862.8 558 75.3
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 2.6e-248 862.1 578 74.2
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 2.6e-248 862.1 574 74.2
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 4.4e-248 861.3 588 72.1
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 4.4e-248 861.3 556 75.2
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 1.7e-247 859.4 599 72.0
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 2.2e-247 859.0 552 73.9
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 3.7e-247 858.2 557 74.9
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 4.9e-247 857.8 591 69.5
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 6.4e-247 857.4 549 74.9
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 6.4e-247 857.4 563 74.8
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 8.3e-247 857.1 550 74.2
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 2.0e-245 852.4 554 74.0
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 1.7e-244 849.4 570 72.5
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 8.6e-244 847.0 547 74.2
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 1.1e-243 846.7 547 74.0
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 1.9e-243 845.9 554 74.0
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 9.5e-243 843.6 569 74.3
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 1.8e-241 839.3 554 73.3
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 2.3e-241 839.0 663 65.3
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 6.8e-241 837.4 554 72.9
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 8.9e-241 837.0 554 72.7
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 8.9e-241 837.0 587 69.5
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 1.2e-240 836.6 554 72.6
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 1.2e-240 836.6 572 71.7
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 4.4e-240 834.7 570 71.1
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 1.7e-239 832.8 554 73.3
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 2.2e-239 832.4 570 70.7
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 4.9e-239 831.2 554 71.3
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 4.9e-239 831.2 552 71.9
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 1.1e-238 830.1 541 73.8
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 5.4e-238 827.8 554 72.4
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 1.1e-235 820.1 561 72.0
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 4.1e-230 801.6 547 70.4
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 1.6e-229 799.7 554 70.8
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 5.1e-228 794.7 545 70.1
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 4.3e-227 791.6 503 74.8
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 5.6e-227 791.2 558 70.3
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 1.1e-225 786.9 553 69.3
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 2.2e-223 779.2 516 75.4
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 2.4e-222 775.8 477 78.6
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 1.2e-218 763.5 531 71.6
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 1.2e-216 756.9 545 65.1
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 2.6e-216 755.7 554 66.6
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 2.9e-215 752.3 554 66.6
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 6.4e-215 751.1 587 63.5
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 1.2e-213 746.9 463 77.8
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 1.5e-211 740.0 528 69.9
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 6.9e-209 731.1 595 65.9
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 5.1e-204 714.9 619 60.7
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 1.9e-198 696.4 472 68.0
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.3e-194 683.7 540 64.1
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 6.7e-188 661.4 545 57.8
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 1.2e-184 650.6 421 75.8
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 4.5e-184 648.7 547 56.5
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 2.4e-177 626.3 520 58.5
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 7.7e-168 594.7 599 53.4
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 2.7e-157 559.7 531 58.6
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 1.1e-155 554.3 336 79.5
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 4.1e-153 545.8 358 73.7
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.2e-149 534.3 319 78.1
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 5.7e-147 525.4 309 79.6
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 1.9e-142 510.4 320 74.4
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 2.3e-140 503.4 350 69.4
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 3.4e-139 499.6 547 49.9
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 6.3e-138 495.4 446 57.6
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 1.2e-128 464.5 573 42.6
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 1.8e-124 450.7 432 56.2
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 8.9e-124 448.4 331 68.6
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 4.4e-107 392.9 368 53.3
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 8.4e-98 362.1 627 35.1
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 9.6e-94 348.6 206 81.1
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.0e-87 328.6 229 70.3
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 1.9e-86 324.3 251 63.3
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.1e-54 218.8 160 62.5
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.1e-52 212.2 140 70.7
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 4.4e-46 190.3 149 59.7
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 5.3e-44 183.3 159 57.9
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 4.2e-41 173.7 130 64.6
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 2.0e-38 164.9 99 74.7
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 2.5e-33 147.9 161 50.3
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 1.1e-28 132.5 100 58.0
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 1.8e-28 131.7 85 70.6
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 5.0e-26 123.6 69 81.2
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 8.3e-21 106.3 64 75.0
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 2.3e-18 98.2 76 68.4
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 9.5e-17 92.8 107 48.6
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 4.9e-13 80.5 42 88.1
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 6.4e-13 80.1 85 43.5
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 3.0e-10 71.2 54 66.7
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 6.6e-10 70.1 46 73.9
Lj1P772T14 Lonicera japonica HOM05D002380 ORTHO05D008286 1.2e-08 65.9 77 45.5
CAN.G96.10 Capsicum annuum HOM05D002380 ORTHO05D026288 1.6e-08 65.5 36 83.3
CBR_g8455 Chara braunii HOM05D002380 ORTHO05D008286 8.9e-07 59.7 71 49.3


User provided reference genes

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