Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 5.9e-228 793.9 409 100.0
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 4.2e-141 505.4 395 73.9
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 2.4e-136 489.6 370 71.4
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 6.5e-102 375.2 258 79.1
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 5.2e-99 365.5 412 51.9
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.1e-96 357.8 413 51.6
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 1.8e-96 357.1 412 49.8
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 7.0e-96 355.1 411 50.4
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.5e-93 347.4 413 50.4
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 4.2e-93 345.9 440 47.7
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 1.0e-91 341.3 419 47.7
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 1.2e-90 337.8 412 48.5
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 2.6e-90 336.7 411 46.5
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 5.7e-90 335.5 417 48.0
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 2.0e-87 327.0 412 46.4
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.3e-86 324.3 412 46.1
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 2.3e-86 323.6 417 46.3
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 8.6e-86 321.6 387 48.1
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 3.6e-84 316.2 388 49.2
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 6.8e-83 312.0 426 46.7
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 2.6e-82 310.1 420 46.4
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 2.9e-81 306.6 425 45.4
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 2.3e-78 297.0 411 45.5
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 2.3e-78 297.0 432 43.8
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 2.5e-77 293.5 412 43.9
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 1.2e-76 291.2 478 40.6
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.6e-76 290.8 375 44.3
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 8.0e-76 288.5 474 40.3
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 1.4e-75 287.7 419 43.7
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.1e-75 286.6 478 40.2
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 2.4e-72 276.9 424 42.7
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 7.1e-72 275.4 420 43.6
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 1.6e-71 274.2 434 41.9
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 1.0e-70 271.6 452 39.6
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 1.3e-70 271.2 386 43.5
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 1.1e-69 268.1 317 47.3
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 1.1e-69 268.1 411 41.8
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.3e-69 266.5 469 39.2
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.3e-69 266.5 469 38.6
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.2e-68 264.6 468 38.5
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 2.1e-68 263.8 445 41.3
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 1.4e-67 261.2 394 42.4
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 2.6e-66 256.9 434 37.8
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 3.4e-66 256.5 423 38.8
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 9.9e-66 255.0 402 41.5
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 1.9e-64 250.8 464 37.3
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 2.7e-63 246.9 468 37.4
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 4.6e-63 246.1 413 42.4
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 7.8e-63 245.4 466 36.9
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 1.0e-62 245.0 278 50.0
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 2.3e-62 243.8 337 43.9
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 3.0e-62 243.4 408 39.5
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.5e-61 241.1 253 56.1
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 7.3e-61 238.8 420 37.9
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.2e-60 238.0 383 40.2
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 2.1e-60 237.3 392 39.5
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 4.7e-60 236.1 424 40.1
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.4e-59 234.6 403 40.2
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.5e-58 231.1 414 40.1
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.5e-58 231.1 310 45.5
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 2.0e-58 230.7 459 34.6
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 2.6e-58 230.3 408 40.4
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 2.9e-57 226.9 459 34.6
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 3.8e-57 226.5 469 37.1
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 1.4e-56 224.6 402 39.1
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 3.2e-56 223.4 420 36.0
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 5.4e-56 222.6 426 37.3
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 5.4e-56 222.6 258 48.8
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 2.7e-55 220.3 480 34.8
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 8.7e-54 215.3 428 37.9
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.9e-53 214.2 253 50.2
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 5.6e-53 212.6 421 36.8
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 2.8e-52 210.3 403 36.2
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 4.8e-52 209.5 473 33.4
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 4.8e-52 209.5 385 39.0
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 6.9e-51 205.7 471 33.3
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 1.5e-50 204.5 397 38.0
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 1.5e-50 204.5 393 36.9
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.0e-50 204.1 333 40.2
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 4.4e-50 203.0 431 34.3
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 9.9e-50 201.8 417 35.7
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.3e-49 201.4 262 45.8
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 2.2e-49 200.7 421 34.4
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.9e-49 199.5 212 52.8
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 8.4e-49 198.7 233 48.1
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 2.4e-48 197.2 440 33.4
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 2.4e-48 197.2 442 34.2
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 5.4e-48 196.1 423 34.3
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 6.0e-47 192.6 290 43.4
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 1.0e-46 191.8 430 34.0
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 1.7e-46 191.0 423 33.3
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 1.7e-46 191.0 345 39.1
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 3.9e-46 189.9 437 35.0
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 1.9e-45 187.6 451 32.2
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 1.3e-44 184.9 438 31.3
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 6.2e-44 182.6 449 34.3
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 2.4e-43 180.6 408 32.8
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 4.5e-42 176.4 416 35.8
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.8e-42 176.0 251 44.2
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 3.5e-39 166.8 269 41.6
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 8.7e-38 162.2 357 32.8
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 1.1e-37 161.8 261 43.7
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 8.1e-36 155.6 252 40.1
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 1.0e-33 148.7 474 29.3
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 1.9e-32 144.4 438 29.2
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 3.2e-32 143.7 195 44.1
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 9.3e-32 142.1 327 33.0
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.8e-30 137.9 344 32.3
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 4.1e-27 126.7 300 36.0
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 6.9e-27 125.9 285 35.4
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 1.2e-26 125.2 260 33.8
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 1.3e-25 121.7 142 52.1
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 3.2e-24 117.1 414 28.0
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 2.7e-23 114.0 115 50.4
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.6e-20 104.8 133 51.1
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 2.8e-20 104.0 258 33.7
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 2.8e-20 104.0 310 31.0
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.9e-18 96.3 263 31.9
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 1.3e-17 95.1 103 54.4
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 7.2e-16 89.4 110 48.2
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.6e-15 88.2 80 68.8
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 2.7e-15 87.4 93 47.3
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 2.0e-13 81.3 81 63.0
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.5e-13 80.9 74 66.2
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 2.4e-11 74.3 150 38.0
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 9.1e-11 72.4 68 45.6
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 1.2e-10 72.0 124 35.5
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.4e-10 70.5 68 42.6
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 6.5e-09 66.2 94 45.7
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 1.1e-08 65.5 136 33.1
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 1.1e-08 65.5 94 38.3
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 5.5e-08 63.2 135 31.9
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.6e-07 61.6 69 42.0
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 3.6e-07 60.5 120 35.8
Eucgr.D02395 Eucalyptus grandis HOM05D005648 ORTHO05D029324 4.7e-07 60.1 112 32.1
Eucgr.D02408 Eucalyptus grandis HOM05D005648 ORTHO05D029324 5.1e-06 56.6 94 35.1


User provided reference genes

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