Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 0.0e+00 1682.2 911 100.0
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 0.0e+00 1417.9 911 86.5
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 0.0e+00 1364.0 910 84.5
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 0.0e+00 1349.3 911 83.4
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 0.0e+00 1338.6 910 82.4
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 4.2e-282 974.9 912 60.2
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.4e-277 959.1 896 61.7
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 6.4e-275 951.0 903 59.9
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.1e-269 933.7 917 60.4
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.4e-269 932.6 941 59.6
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 5.8e-268 927.9 903 59.6
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 7.1e-266 921.0 934 58.6
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 5.1e-264 914.8 919 57.2
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 1.1e-263 913.7 925 59.1
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.9e-263 912.9 906 59.3
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 5.6e-263 911.4 917 59.2
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 4.5e-260 901.7 862 61.3
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 7.6e-260 901.0 918 56.5
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 3.8e-259 898.7 874 60.4
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 1.4e-258 896.7 900 57.2
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 1.4e-258 896.7 914 58.3
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 6.7e-256 887.9 924 57.9
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 5.7e-255 884.8 917 58.8
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 2.6e-252 875.9 922 57.3
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 4.5e-252 875.2 917 57.6
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 5.0e-251 871.7 933 57.3
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.5e-250 869.4 906 56.5
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 2.7e-249 865.9 927 56.6
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 6.3e-246 854.7 908 57.0
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 1.1e-245 854.0 896 56.5
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.1e-245 854.0 918 55.0
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 2.4e-245 852.8 904 56.1
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 1.2e-244 850.5 917 56.7
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 2.0e-244 849.7 914 55.7
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 2.2e-243 846.3 908 55.3
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 1.4e-242 843.6 909 55.8
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 3.2e-242 842.4 908 55.3
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 3.2e-242 842.4 925 54.9
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.7e-241 839.3 919 56.3
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 2.0e-239 833.2 941 54.0
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 2.6e-239 832.8 900 55.6
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.6e-239 832.8 919 55.9
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 1.3e-238 830.5 915 54.4
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.4e-237 827.0 919 55.8
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 1.8e-237 826.6 911 55.9
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 1.2e-236 823.9 884 56.6
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.9e-235 819.3 924 54.9
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 2.9e-235 819.3 904 55.9
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 8.5e-235 817.8 926 54.8
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 1.1e-234 817.4 918 54.0
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 1.9e-234 816.6 912 55.8
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 1.6e-233 813.5 916 53.9
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.7e-233 812.8 904 55.1
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 3.6e-233 812.4 921 54.6
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 6.7e-232 808.1 850 56.5
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 1.1e-231 807.4 924 54.1
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 3.3e-231 805.8 911 52.9
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 3.7e-230 802.4 919 53.8
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 3.8e-227 792.3 908 54.1
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 3.8e-227 792.3 910 54.8
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 3.2e-226 789.3 911 53.5
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 5.5e-226 788.5 901 53.1
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 1.2e-225 787.3 912 53.9
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.1e-225 786.6 904 54.0
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 2.7e-225 786.2 869 53.2
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 1.0e-224 784.3 822 54.4
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.2e-223 780.8 883 52.2
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 1.5e-223 780.4 911 52.3
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 3.3e-223 779.2 864 55.3
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 1.7e-222 776.9 931 52.8
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.1e-221 774.2 804 57.7
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.1e-221 772.7 868 53.9
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 2.2e-219 766.5 867 54.9
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 1.1e-218 764.2 735 59.9
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 2.5e-218 763.1 917 52.1
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 2.7e-217 759.6 827 54.7
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 6.1e-217 758.4 888 50.6
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 6.8e-216 755.0 854 53.3
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 1.2e-215 754.2 911 52.4
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 2.6e-215 753.1 913 51.9
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 4.4e-215 752.3 916 52.4
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 9.8e-215 751.1 883 51.1
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 2.4e-213 746.5 898 50.7
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 1.2e-212 744.2 893 51.1
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 7.7e-212 741.5 892 50.4
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 2.3e-211 740.0 885 50.5
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 2.9e-211 739.6 886 50.7
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 3.3e-210 736.1 887 50.3
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 5.5e-210 735.3 897 49.6
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 5.5e-210 735.3 880 51.1
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 8.0e-209 731.5 907 51.0
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 2.3e-208 729.9 864 52.3
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.5e-207 727.2 913 49.3
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 2.2e-206 723.4 894 49.1
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 5.4e-205 718.8 888 49.7
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 1.5e-202 710.7 884 50.2
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 2.0e-199 700.3 891 49.2
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 5.8e-199 698.7 903 48.2
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 1.7e-198 697.2 861 49.0
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 4.1e-197 692.6 879 48.9
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 9.2e-197 691.4 897 48.0
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 7.8e-196 688.3 827 51.1
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.0e-195 686.4 919 48.0
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 3.4e-191 672.9 756 53.4
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 3.5e-188 662.9 913 47.5
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.3e-182 644.4 898 46.3
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 6.4e-182 642.1 904 47.2
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 5.4e-181 639.0 884 45.4
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 4.0e-176 622.9 577 61.9
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.5e-175 620.9 893 44.8
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 6.4e-174 615.5 869 46.3
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 7.1e-173 612.1 612 57.8
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 8.7e-171 605.1 665 55.3
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 2.4e-168 597.0 882 45.5
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 6.9e-168 595.5 881 44.6
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.4e-165 587.0 649 55.5
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 6.2e-161 572.4 890 43.4
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 7.6e-151 538.9 1090 38.4
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 1.5e-138 498.0 409 68.5
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 4.3e-130 469.9 451 59.6
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 2.8e-129 467.2 798 42.1
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.3e-121 441.8 915 37.7
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 1.7e-121 441.4 796 41.1
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.4e-120 438.3 1063 33.3
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 7.2e-109 399.4 942 35.9
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 1.2e-108 398.7 455 53.4
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.0e-103 381.3 247 76.9
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 2.9e-102 377.5 345 61.4
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 8.5e-102 375.9 946 34.8
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.9e-101 374.8 278 69.4
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 1.3e-89 335.5 870 33.8
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 1.1e-88 332.4 340 56.5
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 1.3e-86 325.5 902 31.8
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 1.3e-86 325.5 902 31.8
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 1.9e-80 305.1 986 30.4
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.2e-68 265.8 805 32.2
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 2.3e-67 261.5 214 65.4
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 1.5e-66 258.8 210 65.7
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 1.2e-63 249.2 331 47.4
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 1.1e-61 242.7 405 41.5
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 1.2e-60 239.2 405 41.2
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 2.8e-60 238.0 419 42.7
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 5.2e-59 233.8 415 41.9
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 2.9e-57 228.0 841 27.0
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 2.1e-55 221.9 368 41.8
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-51 209.5 406 39.9
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.9e-48 198.7 322 43.2
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 4.2e-48 197.6 178 66.9
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 9.3e-48 196.4 446 36.5
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.9e-45 188.7 173 59.5
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 2.5e-45 188.3 369 38.2
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 2.5e-45 188.3 314 42.4
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.2e-42 179.5 249 44.6
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 2.9e-41 174.9 387 36.7
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 9.3e-40 169.9 194 50.5
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 4.6e-39 167.5 238 41.6
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 6.7e-38 163.7 147 61.9
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 1.6e-36 159.1 169 53.8
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 3.8e-33 147.9 1190 24.4
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 4.9e-33 147.5 204 42.2
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.2e-32 144.8 132 60.6
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 1.6e-31 142.5 131 55.7
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.7e-31 141.7 668 25.9
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 4.3e-29 134.4 819 26.0
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 1.6e-28 132.5 314 37.6
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 2.1e-28 132.1 315 37.8
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 7.9e-23 113.6 308 36.4
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 7.9e-23 113.6 124 59.7
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 1.8e-22 112.5 305 34.8
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 8.8e-14 83.6 181 33.1
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 8.8e-14 83.6 263 33.1
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.5e-10 72.8 140 40.7
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 7.7e-10 70.5 55 61.8
Cfa021652 Carpinus fangiana HOM05D000880 ORTHO05D004760 3.6e-07 61.6 48 56.2


User provided reference genes

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