Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 0.0e+00 2490.7 1291 100.0
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 0.0e+00 2016.5 1311 79.9
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 0.0e+00 2004.2 1385 76.5
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 0.0e+00 1981.5 1312 80.0
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 0.0e+00 1307.7 1287 57.6
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 0.0e+00 1232.6 1283 54.6
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1179.1 1356 54.0
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 0.0e+00 1150.6 1331 51.5
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 0.0e+00 1122.8 1322 51.2
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 0.0e+00 1115.1 1357 49.2
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 0.0e+00 1114.0 1265 52.6
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 0.0e+00 1106.3 1313 50.0
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 0.0e+00 1102.8 1249 53.3
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 0.0e+00 1096.6 1330 49.8
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 9.3e-304 1047.3 1366 48.9
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 1.2e-298 1030.4 1361 48.6
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 1.5e-298 1030.0 1366 48.2
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 1.0e-297 1027.3 1342 48.8
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 1.7e-297 1026.5 1274 49.5
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 5.0e-297 1025.0 1361 48.0
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 7.2e-296 1021.1 1344 48.9
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 7.4e-293 1011.1 1341 48.7
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 7.7e-290 1001.1 1288 47.7
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 1.7e-289 1000.0 1338 47.8
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 6.1e-287 991.5 1320 48.6
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 1.0e-286 990.7 1285 47.9
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 2.0e-285 986.5 1352 47.9
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 2.0e-282 976.5 1271 45.2
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 3.5e-282 975.7 1317 47.6
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 2.2e-281 973.0 1272 48.3
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 2.7e-279 966.1 1320 46.7
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 3.6e-279 965.7 1341 47.7
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.8e-278 963.4 1395 45.1
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 4.4e-277 958.7 1271 47.1
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.8e-273 945.7 1309 45.1
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 4.2e-272 942.2 1296 46.1
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 8.0e-271 937.9 1342 44.5
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 1.0e-270 937.6 1342 46.1
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 9.1e-267 924.5 1387 44.7
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 1.5e-264 917.1 1283 44.6
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 5.5e-264 915.2 1357 43.1
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 2.3e-262 909.8 1390 44.1
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 6.3e-260 901.7 1332 44.1
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.4e-259 900.6 1344 46.2
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 1.1e-256 891.0 1348 45.4
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 7.3e-256 888.3 1295 45.3
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 1.8e-254 883.6 1289 43.6
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 8.9e-254 881.3 1296 44.8
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 6.8e-246 855.1 1276 44.0
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 4.9e-244 849.0 1248 45.3
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 5.4e-243 845.5 1261 43.4
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.5e-237 827.4 1232 43.8
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 9.8e-237 824.7 1208 44.5
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 3.5e-234 816.2 1275 42.6
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 4.0e-230 802.7 1231 43.5
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 3.8e-228 796.2 1282 42.7
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 7.8e-226 788.5 1284 40.8
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 5.3e-214 749.2 1268 42.3
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 7.6e-213 745.3 1385 38.3
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 7.9e-210 735.3 1086 41.7
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 7.1e-203 712.2 926 46.1
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 7.1e-195 685.6 1420 37.3
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 4.3e-192 676.4 1274 38.9
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 2.4e-190 670.6 894 45.7
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 3.1e-190 670.2 1317 35.8
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 9.0e-190 668.7 1265 37.0
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 1.3e-185 654.8 1317 36.3
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 3.9e-185 653.3 1323 37.0
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 3.1e-182 643.7 1333 37.7
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 6.9e-182 642.5 1309 35.7
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 1.2e-181 641.7 1310 36.3
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 6.5e-180 636.0 1255 36.0
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 9.4e-179 632.1 1252 37.5
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 4.6e-178 629.8 1308 36.2
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 6.1e-178 629.4 792 46.3
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 3.9e-177 626.7 1308 35.0
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 4.4e-176 623.2 1322 36.9
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 8.2e-175 619.0 1290 37.1
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 6.5e-172 609.4 1250 38.7
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 2.5e-171 607.4 1272 36.3
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 4.2e-171 606.7 1239 38.4
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 5.2e-161 573.2 1240 34.5
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 4.4e-160 570.1 1301 33.7
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 5.9e-149 533.1 1221 35.2
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.3e-143 515.4 1306 33.2
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 4.3e-139 500.4 676 48.1
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 4.0e-137 493.8 750 42.0
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 9.2e-134 482.6 1425 30.7
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 3.2e-126 457.6 1380 29.6
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 1.1e-115 422.5 484 51.0
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 3.8e-111 407.5 1002 34.5
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 6.0e-101 373.6 575 40.3
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 7.3e-99 366.7 960 34.2
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 6.9e-97 360.1 1176 28.7
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 2.5e-75 288.5 1498 27.2
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 3.3e-75 288.1 735 33.3
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 4.1e-73 281.2 1655 24.5
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.9e-71 275.0 342 50.0
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 3.6e-69 268.1 254 53.5
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.1e-65 256.5 352 41.2
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 7.7e-64 250.4 1003 30.0
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 1.1e-62 246.5 275 54.2
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 1.3e-58 233.0 221 64.3
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 7.2e-46 190.7 1300 26.2
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 4.8e-42 177.9 105 75.2
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.2e-37 163.3 217 44.7
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 2.3e-36 159.1 221 41.2
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 2.7e-32 145.6 189 40.7
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 1.0e-31 143.7 149 47.7
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 1.3e-31 143.3 201 41.3
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 9.5e-30 137.1 175 41.7
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 6.1e-21 107.8 102 48.0
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 2.3e-20 105.9 165 37.0
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.4e-19 102.1 126 48.4
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 7.5e-19 100.9 270 31.5
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 4.1e-17 95.1 86 53.5
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 9.2e-17 94.0 86 53.5
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 1.2e-16 93.6 107 50.5
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 6.0e-16 91.3 96 51.0
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 1.3e-15 90.1 69 53.6
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 2.3e-15 89.4 194 35.6
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 6.2e-13 81.3 251 29.9
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.1e-12 80.5 54 66.7
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 3.1e-12 79.0 307 21.2
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 6.8e-12 77.8 148 33.8
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 3.4e-11 75.5 77 49.4
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 3.4e-11 75.5 77 49.4
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 5.8e-11 74.7 61 63.9
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.7e-10 73.2 62 51.6
Psat0ss2518g0240 Pisum sativum HOM05D001879 ORTHO05D007648 7.0e-09 67.8 108 37.0
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 2.1e-08 66.2 74 47.3
Solyc04g077950.2 Solanum lycopersicum HOM05D001879 ORTHO05D007648 6.6e-07 61.2 109 55.0
AL4G14580 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 4.3e-06 58.5 53 49.1


User provided reference genes

Program Settings