Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 1.9e-102 376.3 271 100.0
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 2.4e-84 316.2 282 86.2
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 5.3e-84 315.1 285 84.9
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 7.7e-83 311.2 283 84.8
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 4.8e-69 265.4 270 78.9
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 2.7e-67 259.6 279 73.5
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 1.0e-66 257.7 268 77.2
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 7.2e-65 251.5 272 77.2
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 9.4e-65 251.1 269 73.2
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 4.7e-64 248.8 279 74.2
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 6.1e-64 248.4 268 78.7
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 6.1e-64 248.4 272 76.8
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 1.0e-63 247.7 280 75.7
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 1.0e-63 247.7 282 73.8
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 1.0e-63 247.7 269 77.0
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 1.4e-63 247.3 269 77.0
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 2.3e-63 246.5 279 75.3
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 3.0e-63 246.1 269 74.7
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 5.2e-63 245.4 277 75.8
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 5.2e-63 245.4 272 76.1
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 5.2e-63 245.4 280 71.1
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 5.2e-63 245.4 272 76.8
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 6.8e-63 245.0 268 75.7
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 8.8e-63 244.6 268 76.1
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 8.8e-63 244.6 268 76.1
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 8.8e-63 244.6 269 74.3
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 2.6e-62 243.0 283 74.6
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 3.4e-62 242.7 280 70.0
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 5.7e-62 241.9 270 73.3
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 5.7e-62 241.9 269 75.8
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 7.5e-62 241.5 292 71.9
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 7.5e-62 241.5 292 71.9
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 1.3e-61 240.7 271 64.9
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 2.2e-61 240.0 283 74.2
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 8.3e-61 238.0 273 75.5
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 1.1e-60 237.7 270 75.9
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 1.4e-60 237.3 268 75.7
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 1.8e-60 236.9 280 73.6
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 4.1e-60 235.7 280 73.6
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 5.4e-60 235.3 280 73.6
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 5.4e-60 235.3 282 73.4
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 9.1e-60 234.6 280 73.6
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 1.2e-59 234.2 282 72.7
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 1.6e-59 233.8 282 72.3
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 4.5e-59 232.3 271 73.8
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 5.9e-59 231.9 285 70.5
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 7.7e-59 231.5 270 65.6
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 1.0e-58 231.1 218 85.3
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 1.7e-58 230.3 268 75.4
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 1.7e-58 230.3 281 74.0
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 2.9e-58 229.6 281 73.0
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 3.8e-58 229.2 283 68.6
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 3.8e-58 229.2 274 73.0
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 5.0e-58 228.8 280 71.8
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 5.0e-58 228.8 275 70.9
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 6.6e-58 228.4 281 73.0
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 6.6e-58 228.4 239 79.9
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 1.5e-57 227.3 290 59.7
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 1.5e-57 227.3 282 73.4
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 1.5e-57 227.3 279 70.3
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 2.5e-57 226.5 268 72.8
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 2.5e-57 226.5 256 60.5
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 9.5e-57 224.6 283 64.3
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 9.5e-57 224.6 290 67.2
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 1.2e-56 224.2 276 74.3
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 1.6e-56 223.8 277 70.4
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 2.1e-56 223.4 268 72.4
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 2.1e-56 223.4 312 46.5
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 4.7e-56 222.2 280 71.1
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 8.0e-56 221.5 280 70.4
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 8.0e-56 221.5 280 71.8
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.3e-55 219.9 255 54.1
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 3.0e-55 219.5 289 69.9
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 4.0e-55 219.2 281 70.1
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 6.8e-55 218.4 270 58.5
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 8.9e-55 218.0 279 71.3
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 3.4e-54 216.1 214 72.4
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 3.4e-54 216.1 194 86.6
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 2.8e-53 213.0 256 71.9
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 8.3e-53 211.5 194 88.7
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 1.4e-52 210.7 364 43.4
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 1.8e-52 210.3 312 64.7
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 2.9e-50 203.0 191 77.0
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 2.1e-48 196.8 257 59.9
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 2.3e-47 193.4 230 64.8
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 3.4e-46 189.5 220 63.6
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.8e-46 188.7 180 82.8
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 3.0e-42 176.4 273 64.1
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 5.2e-39 165.6 219 51.1
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 2.0e-38 163.7 86 90.7
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.7e-37 160.6 86 87.2
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 4.9e-37 159.1 85 87.1
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.9e-36 157.1 83 89.2
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 4.1e-36 156.0 86 86.0
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 2.1e-35 153.7 238 47.5
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 3.0e-34 149.8 82 86.6
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.1e-33 147.9 86 81.4
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.1e-33 147.9 86 81.4
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 1.9e-28 130.6 193 50.8
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 1.9e-25 120.6 212 71.2
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.2e-24 117.9 125 56.8
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 3.1e-23 113.2 122 57.4
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 4.4e-22 109.4 235 55.3
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 2.9e-21 106.7 119 56.3
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 1.4e-20 104.4 142 57.0
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 3.5e-19 99.8 69 71.0
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 1.1e-15 88.2 56 71.4
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 5.3e-15 85.9 203 45.8
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 1.4e-12 77.8 45 80.0
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 4.2e-12 76.3 54 74.1
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 2.5e-09 67.0 44 72.7
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 1.6e-08 64.3 86 48.8
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 8.1e-08 62.0 40 75.0
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 9.0e-07 58.5 52 57.7


User provided reference genes

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