Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 6.0e-172 607.4 312 100.0
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 2.1e-140 502.7 320 84.1
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 2.1e-140 502.7 319 83.7
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 1.5e-138 496.5 319 83.1
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 3.8e-102 375.6 322 64.0
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 4.2e-101 372.1 321 64.5
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 1.4e-99 367.1 318 63.8
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 2.6e-98 362.8 322 62.7
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 9.7e-98 360.9 322 62.4
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 1.4e-96 357.1 326 62.0
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 1.2e-92 344.0 318 61.0
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 3.6e-92 342.4 333 58.3
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 1.4e-91 340.5 330 59.4
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 5.2e-91 338.6 319 58.0
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 6.8e-91 338.2 316 62.3
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 6.8e-91 338.2 327 57.8
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 1.2e-90 337.4 319 57.7
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 2.0e-90 336.7 330 57.3
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 4.4e-90 335.5 315 58.4
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 7.5e-90 334.7 316 60.1
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 5.4e-88 328.6 324 58.0
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 5.4e-88 328.6 326 59.5
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 7.0e-88 328.2 323 58.8
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 2.7e-87 326.2 321 56.7
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 2.7e-87 326.2 323 58.5
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 5.9e-87 325.1 317 58.0
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 1.3e-86 323.9 325 57.5
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 1.7e-86 323.6 318 58.2
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 2.2e-86 323.2 328 58.5
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 2.9e-86 322.8 329 56.2
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 3.8e-86 322.4 322 56.8
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 6.5e-86 321.6 312 59.3
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.9e-85 320.1 315 59.4
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 3.2e-85 319.3 324 56.2
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 4.2e-85 318.9 315 57.5
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 2.1e-84 316.6 315 59.0
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.1e-84 316.6 315 59.0
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 3.6e-84 315.8 327 58.4
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 3.6e-84 315.8 315 59.4
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 4.7e-84 315.5 318 57.2
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 6.1e-84 315.1 318 55.3
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 1.4e-83 313.9 315 57.5
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 1.4e-83 313.9 327 55.0
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.4e-83 313.9 327 57.8
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.4e-83 313.9 327 58.1
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 2.3e-83 313.2 315 57.1
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 2.0e-82 310.1 318 56.9
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 2.6e-82 309.7 315 55.9
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 3.4e-82 309.3 328 54.9
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 4.4e-82 308.9 329 54.4
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 4.4e-82 308.9 329 54.4
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 9.8e-82 307.8 313 54.0
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 1.3e-81 307.4 369 52.8
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 1.7e-81 307.0 325 55.1
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 2.2e-81 306.6 323 54.5
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 2.4e-80 303.1 324 54.9
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 2.0e-79 300.1 331 53.5
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 2.7e-79 299.7 320 55.3
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 7.8e-79 298.1 326 55.5
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 2.9e-78 296.2 343 51.9
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 3.8e-78 295.8 316 54.1
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 5.0e-78 295.4 315 52.7
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 4.3e-77 292.4 325 53.5
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 4.3e-77 292.4 324 54.3
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 5.6e-77 292.0 322 53.1
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 9.5e-77 291.2 305 54.1
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 1.2e-76 290.8 312 54.2
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 2.1e-76 290.0 310 52.9
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 2.1e-76 290.0 335 53.1
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 2.8e-76 289.7 319 53.9
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 3.6e-76 289.3 317 54.6
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 1.0e-75 287.7 314 55.4
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 1.4e-75 287.3 312 54.2
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 2.3e-75 286.6 310 53.5
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 3.0e-75 286.2 310 53.2
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 3.0e-75 286.2 310 53.2
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 4.0e-75 285.8 324 52.8
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 1.5e-74 283.9 321 53.3
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 2.0e-74 283.5 310 52.9
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 9.8e-74 281.2 312 52.2
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 2.9e-73 279.6 311 52.4
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 6.4e-73 278.5 320 52.8
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 9.2e-72 274.6 312 51.6
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 9.2e-72 274.6 328 51.2
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 1.6e-71 273.9 322 48.8
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 3.5e-71 272.7 312 52.9
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 1.5e-69 267.3 312 51.6
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 5.6e-69 265.4 296 54.4
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 2.1e-68 263.5 328 48.5
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 6.8e-67 258.5 326 47.5
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 8.9e-67 258.1 330 49.1
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 1.2e-66 257.7 328 49.4
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 3.4e-66 256.1 315 51.4
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 3.7e-65 252.7 345 45.2
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 3.7e-65 252.7 310 50.3
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 8.3e-65 251.5 313 47.6
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 7.0e-64 248.4 275 52.0
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 1.5e-61 240.7 329 44.4
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 5.6e-61 238.8 161 72.7
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 5.6e-61 238.8 329 44.1
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 4.4e-58 229.2 405 39.3
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 6.0e-55 218.8 330 43.6
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 7.6e-50 201.8 329 40.1
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 1.2e-42 177.9 309 38.5
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 1.2e-42 177.9 314 36.9
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 9.9e-42 174.9 135 63.0
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 2.1e-39 167.2 254 41.7
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 8.7e-38 161.8 196 44.9
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 6.2e-36 155.6 240 38.8
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 4.2e-32 142.9 303 36.6
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 4.6e-31 139.4 327 32.4
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 7.9e-31 138.7 350 31.1
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 3.7e-28 129.8 124 50.8
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 4.8e-28 129.4 139 48.2
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 1.8e-27 127.5 344 31.1
CSS0037261 Camellia sinensis var. sinensis HOM05D006355 ORTHO05D008284 1.5e-26 124.4 271 38.0
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 2.9e-25 120.2 144 44.4
Aqoxy7G02122 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 6.7e-22 109.0 226 36.3
SHI30664 Sapria himalayana HOM05D006355 ORTHO05D008284 1.3e-20 104.8 178 39.9
Aqoxy4G01928 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 2.8e-20 103.6 226 35.4
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 3.1e-19 100.1 57 70.2
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 6.9e-19 99.0 57 70.2
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 7.6e-18 95.5 84 58.3
Actinidia25232 Actinidia chinensis HOM05D006355 ORTHO05D008284 2.2e-09 67.4 107 43.0
Os01g0583300 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D300111 2.1e-07 60.8 38 73.7
GSVIVG01008148001 Vitis vinifera HOM05D006355 ORTHO05D000948 2.3e-06 57.4 79 43.0


User provided reference genes

Program Settings