Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 1.2e-288 995.7 477 100.0
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 3.6e-261 904.4 477 89.1
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 8.9e-260 899.8 477 88.5
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 2.6e-259 898.3 477 88.9
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 9.8e-259 896.3 477 88.1
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 1.3e-255 885.9 477 86.8
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 3.0e-255 884.8 478 87.2
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 3.9e-255 884.4 480 88.5
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 5.1e-255 884.0 477 88.1
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.5e-254 882.5 478 87.4
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 1.2e-253 879.4 477 88.3
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 1.6e-253 879.0 477 85.5
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 3.6e-253 877.9 478 87.0
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.8e-252 875.5 481 85.2
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.8e-252 875.5 480 87.3
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 2.3e-252 875.2 480 87.5
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 2.3e-252 875.2 480 87.5
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 4.0e-252 874.4 471 87.7
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 4.0e-252 874.4 480 86.9
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 6.8e-252 873.6 479 87.7
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 1.2e-251 872.8 477 85.5
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 7.6e-251 870.2 478 85.4
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 9.9e-251 869.8 478 85.4
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 2.2e-250 868.6 472 86.9
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 4.9e-250 867.5 472 86.9
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 8.4e-250 866.7 478 85.1
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 4.1e-249 864.4 472 85.0
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 5.4e-249 864.0 479 85.2
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 9.2e-249 863.2 476 85.5
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 1.2e-248 862.8 479 84.6
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.2e-248 862.8 478 86.0
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.6e-248 862.4 472 85.2
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 1.6e-248 862.4 476 85.3
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 3.5e-248 861.3 477 84.5
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 6.0e-248 860.5 479 85.2
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 7.8e-248 860.1 485 85.4
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 1.0e-247 859.8 472 85.8
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 1.3e-247 859.4 479 84.1
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 1.7e-247 859.0 493 82.6
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.7e-247 859.0 472 84.7
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 2.3e-247 858.6 479 84.3
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 1.9e-246 855.5 472 85.2
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 2.5e-246 855.1 478 83.5
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 4.3e-246 854.4 483 85.1
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 1.2e-245 852.8 478 82.6
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 1.2e-245 852.8 479 83.1
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 3.6e-245 851.3 477 83.6
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 1.1e-244 849.7 469 84.0
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 1.1e-244 849.7 459 86.9
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 1.1e-244 849.7 478 83.7
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.8e-244 849.0 479 83.9
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 3.1e-244 848.2 470 86.6
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 3.1e-244 848.2 454 86.1
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 4.0e-244 847.8 478 85.1
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 4.0e-244 847.8 478 83.1
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 1.2e-243 846.3 478 83.1
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 3.4e-243 844.7 479 84.1
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 9.9e-243 843.2 478 82.8
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.3e-242 842.8 485 82.1
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 4.9e-242 840.9 478 83.7
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 6.4e-242 840.5 478 82.2
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 8.4e-242 840.1 479 83.5
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 8.4e-242 840.1 478 83.1
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 1.1e-241 839.7 472 84.3
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 2.4e-241 838.6 479 81.8
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 4.2e-241 837.8 478 81.8
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 7.1e-241 837.0 482 82.6
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 1.6e-240 835.9 470 83.6
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 2.1e-240 835.5 478 82.0
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 2.7e-240 835.1 478 81.8
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 7.8e-240 833.6 478 81.6
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 7.8e-240 833.6 465 84.9
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 7.8e-240 833.6 470 84.5
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.7e-239 832.4 445 87.6
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 1.7e-239 832.4 482 83.0
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 5.1e-239 830.9 478 82.8
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 5.1e-239 830.9 478 82.6
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 8.7e-239 830.1 479 80.6
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 8.7e-239 830.1 442 87.6
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 8.7e-239 830.1 478 83.3
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.1e-238 829.7 490 80.6
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 1.1e-238 829.7 478 81.6
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 1.5e-238 829.3 478 82.6
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 3.3e-238 828.2 483 82.0
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 4.3e-238 827.8 478 81.8
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 1.3e-237 826.2 486 80.2
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.3e-237 826.2 472 83.5
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 4.8e-237 824.3 478 82.2
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 2.4e-236 822.0 479 81.0
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 4.0e-236 821.2 472 82.8
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 6.9e-236 820.5 486 80.2
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 6.9e-236 820.5 480 81.2
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 2.4e-233 812.0 438 86.1
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 3.2e-233 811.6 478 81.6
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 4.2e-233 811.2 455 83.5
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 1.2e-232 809.7 461 82.6
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 1.6e-232 809.3 475 82.7
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 2.2e-226 788.9 503 76.7
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 3.2e-225 785.0 505 76.6
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 5.5e-225 784.3 498 76.1
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 5.5e-225 784.3 479 79.3
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 4.8e-221 771.2 467 78.6
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 2.0e-219 765.8 454 81.5
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 1.1e-212 743.4 478 75.3
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 6.9e-212 740.7 478 75.3
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 3.4e-211 738.4 480 76.2
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 1.2e-208 729.9 495 75.2
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 2.2e-205 719.2 383 87.2
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 2.0e-203 712.6 469 71.6
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 1.9e-201 706.1 474 70.3
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 4.6e-200 701.4 457 73.3
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 3.3e-198 695.3 473 70.2
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 4.5e-195 684.9 482 70.3
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 1.8e-188 662.9 463 70.6
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.5e-177 625.9 359 79.4
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 2.3e-175 619.4 457 68.1
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 1.5e-174 616.7 479 65.3
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.5e-174 616.7 359 78.8
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.5e-153 547.0 419 67.3
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 1.0e-146 524.2 304 80.6
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 6.2e-144 515.0 281 86.5
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 6.8e-143 511.5 275 87.3
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 7.5e-142 508.1 304 79.3
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 6.6e-138 495.0 410 60.5
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 1.5e-134 483.8 436 54.8
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 2.7e-131 473.0 306 74.8
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 5.8e-126 455.3 304 72.7
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 2.4e-111 406.8 211 91.0
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.6e-104 384.0 233 78.5
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.6e-99 367.5 228 75.0
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.6e-99 367.5 228 75.0
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 5.1e-98 362.5 416 48.1
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 1.2e-94 351.3 200 86.0
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 1.3e-90 337.8 463 44.1
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 2.9e-77 293.5 427 42.4
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 4.8e-72 276.2 148 82.4
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 1.3e-69 268.1 179 69.8
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 8.5e-69 265.4 179 69.3
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 7.0e-63 245.7 171 67.8
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 9.1e-63 245.4 171 67.8
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 8.8e-50 202.2 111 85.6
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 7.0e-47 192.6 99 85.9
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 7.0e-47 192.6 99 85.9
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 4.1e-39 166.8 95 87.4
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 7.8e-38 162.5 97 78.4
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.9e-36 157.9 105 70.5
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 2.4e-31 141.0 77 83.1
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 9.2e-31 139.0 85 75.3
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 9.5e-28 129.0 77 79.2
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 1.7e-21 108.2 133 42.1
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 5.1e-21 106.7 56 83.9
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 3.3e-20 104.0 65 70.8
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 1.7e-16 91.7 75 54.7
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 3.8e-16 90.5 72 66.7
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 3.8e-16 90.5 72 66.7
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 4.9e-16 90.1 72 66.7
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 6.0e-14 83.2 46 87.0
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 1.0e-13 82.4 44 81.8
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 4.7e-11 73.6 35 88.6
BcaC01g06364 Brassica carinata HOM05D004186 ORTHO05D011383 9.0e-10 69.3 81 43.2
C03p16540 Brassica napus HOM05D004186 ORTHO05D011383 4.4e-09 67.0 85 41.2
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 7.6e-09 66.2 55 54.5
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 7.6e-09 66.2 55 54.5
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 9.9e-09 65.9 55 56.4
BcaC01g06358 Brassica carinata HOM05D004186 ORTHO05D011383 1.1e-07 62.4 60 48.3
BcaC07g38783 Brassica carinata HOM05D002592 ORTHO05D011383 1.1e-07 62.4 45 62.2
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 1.4e-07 62.0 55 54.5
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 1.4e-07 62.0 55 54.5
C09p03000 Brassica napus HOM05D001159 ORTHO05D011383 1.9e-07 61.6 55 52.7
BolC9t53230H Brassica oleracea HOM05D001159 ORTHO05D011383 1.9e-07 61.6 55 52.7
BolC7t45165H Brassica oleracea HOM05D001159 ORTHO05D011383 3.2e-07 60.8 55 54.5
Lsat_1_v5_gn_9_37000 Lactuca sativa HOM05D004186 ORTHO05D011383 7.1e-07 59.7 58 51.7
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 1.2e-06 58.9 34 76.5
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 2.7e-06 57.8 35 74.3
Lsat_1_v5_gn_0_38501 Lactuca sativa HOM05D002067 ORTHO05D002244 6.0e-06 56.6 40 60.0
DCAR_014710 Daucus carota HOM05D004186 ORTHO05D178538 7.8e-06 56.2 39 69.2


User provided reference genes

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