Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 2.4e-243 845.1 442 100.0
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 5.4e-203 711.1 447 84.1
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 1.1e-200 703.4 446 83.9
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 6.9e-166 587.8 376 83.2
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 2.0e-152 543.1 446 65.9
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 3.1e-150 535.8 447 64.9
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 5.9e-149 531.6 470 64.3
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.8e-148 528.9 447 66.2
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 6.5e-148 528.1 447 66.2
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 6.5e-148 528.1 447 66.2
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 1.5e-147 526.9 447 64.4
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.5e-147 526.2 447 66.2
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 5.5e-147 525.0 446 64.6
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 1.2e-146 523.9 447 65.5
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.1e-146 523.1 446 64.3
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.7e-146 521.9 446 64.1
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 4.7e-146 521.9 447 64.2
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 6.1e-146 521.5 446 64.8
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 6.1e-146 521.5 449 65.9
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 8.0e-146 521.2 450 65.1
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 1.0e-145 520.8 450 65.1
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 1.0e-145 520.8 448 65.8
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 1.4e-145 520.4 446 65.9
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 2.3e-145 519.6 496 61.1
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 2.3e-145 519.6 450 64.4
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 3.0e-145 519.2 450 65.8
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 3.4e-144 515.8 446 65.0
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 6.3e-143 511.5 446 65.7
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.8e-142 510.0 451 65.4
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 1.8e-142 510.0 451 64.1
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 9.1e-142 507.7 450 64.9
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 1.0e-140 504.2 462 62.6
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.3e-140 503.8 443 63.9
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 2.2e-140 503.1 448 64.3
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 5.0e-140 501.9 437 63.8
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 1.5e-139 500.4 446 62.8
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 1.5e-139 500.4 452 63.5
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 1.9e-139 500.0 445 64.5
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 2.5e-139 499.6 448 61.6
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 7.2e-139 498.0 443 64.3
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 9.4e-139 497.7 446 61.9
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.2e-138 497.3 448 62.3
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 1.6e-138 496.9 454 61.2
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 1.6e-138 496.9 453 63.6
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.6e-138 496.9 453 62.5
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.1e-138 496.5 448 62.7
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 4.7e-138 495.4 456 60.5
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 4.7e-138 495.4 446 61.9
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 1.0e-137 494.2 446 62.1
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.4e-137 493.8 448 62.3
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 2.3e-137 493.0 448 62.3
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 2.3e-137 493.0 461 60.7
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 2.0e-136 490.0 448 63.4
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.3e-135 487.3 447 64.2
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 3.7e-135 485.7 450 61.6
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 1.1e-134 484.2 454 59.7
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.1e-134 484.2 446 60.3
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 2.4e-134 483.0 495 57.8
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 3.1e-134 482.6 454 60.6
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 7.0e-134 481.5 446 61.2
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 1.6e-133 480.3 455 60.2
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 5.9e-133 478.4 438 61.2
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 1.0e-132 477.6 445 61.8
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 6.6e-132 474.9 447 60.4
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 6.6e-132 474.9 439 60.8
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 8.6e-132 474.6 448 60.7
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 8.6e-132 474.6 458 60.5
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 1.5e-131 473.8 442 61.1
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 1.9e-131 473.4 496 55.8
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 1.9e-131 473.4 442 59.7
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 3.3e-131 472.6 447 60.9
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.1e-130 468.4 450 59.8
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 8.0e-130 468.0 445 60.9
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 2.3e-129 466.5 447 60.2
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 4.0e-129 465.7 457 59.3
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 5.2e-129 465.3 456 59.4
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 6.8e-129 464.9 456 59.4
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 8.9e-129 464.5 449 58.6
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.0e-128 463.4 452 60.4
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 2.0e-128 463.4 457 59.1
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 5.7e-128 461.8 432 59.5
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 9.8e-128 461.1 475 56.6
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 6.3e-127 458.4 456 59.2
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.8e-126 456.8 445 59.3
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.8e-126 456.8 445 59.3
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 3.2e-126 456.1 442 59.3
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 5.4e-126 455.3 445 58.9
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 1.2e-125 454.1 455 58.5
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 5.9e-125 451.8 443 59.1
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 6.6e-124 448.4 449 59.0
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 8.6e-124 448.0 451 57.6
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 1.9e-123 446.8 444 58.8
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 6.8e-121 438.3 451 57.6
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.9e-119 433.0 447 55.9
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 8.3e-119 431.4 445 57.5
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.0e-117 426.8 457 55.4
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 3.0e-116 422.9 466 54.7
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 3.6e-114 416.0 438 56.6
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 4.7e-114 415.6 436 55.7
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.3e-113 413.3 446 54.5
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 3.1e-113 412.9 448 54.5
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 5.2e-113 412.1 450 55.3
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 8.9e-113 411.4 445 55.5
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 6.4e-111 405.2 442 55.4
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.4e-110 404.1 452 55.3
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 3.1e-105 386.3 369 58.3
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 2.0e-104 383.6 450 52.2
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 3.2e-102 376.3 316 63.3
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 9.2e-102 374.8 483 49.3
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 7.8e-101 371.7 446 52.9
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 3.0e-100 369.8 445 52.1
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 5.6e-99 365.5 450 53.1
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 3.4e-96 356.3 453 50.3
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 1.4e-94 350.9 380 54.5
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 2.1e-93 347.1 442 50.0
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 3.5e-93 346.3 319 61.1
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 4.0e-89 332.8 455 47.9
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.2e-87 327.0 477 45.3
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 9.3e-86 321.6 380 52.1
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 3.1e-81 306.6 517 42.0
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 1.5e-80 304.3 436 46.1
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 2.4e-78 297.0 317 55.2
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 1.1e-73 281.6 315 54.6
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 6.0e-69 265.8 169 75.7
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.2e-63 247.3 447 43.8
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.5e-62 243.8 447 43.8
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 3.9e-60 236.5 218 61.9
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 4.3e-59 233.0 265 54.7
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 4.3e-59 233.0 265 54.7
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.6e-58 231.1 137 81.0
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 9.4e-54 215.3 358 45.5
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.0e-52 211.8 346 43.4
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 7.2e-38 162.5 311 40.2
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.2e-37 161.8 194 47.9
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 7.7e-32 142.5 117 58.1
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 2.9e-31 140.6 69 95.7
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 3.8e-31 140.2 74 87.8
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 5.0e-31 139.8 83 78.3
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 9.4e-30 135.6 91 69.2
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 6.1e-29 132.9 142 49.3
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 6.1e-29 132.9 142 49.3
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 2.6e-27 127.5 442 28.5
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 9.1e-25 119.0 260 36.9
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 1.6e-24 118.2 122 50.8
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 3.5e-24 117.1 243 39.5
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 5.9e-24 116.3 95 60.0
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 5.9e-24 116.3 68 77.9
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 5.5e-22 109.8 140 52.1
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 9.1e-17 92.4 510 25.7
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.0e-11 74.7 62 59.7
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 9.8e-11 72.4 96 49.0
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 1.7e-07 61.6 143 39.2
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 5.0e-07 60.1 86 43.0
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 6.6e-07 59.7 107 35.5
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 5.6e-06 56.6 75 40.0
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 7.3e-06 56.2 133 31.6
unitig_21.g20863 Utricularia gibba HOM05D005384 ORTHO05D006477 7.3e-06 56.2 59 50.8


User provided reference genes

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