Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 7.5e-77 290.4 144 100.0
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 9.1e-67 256.9 141 87.2
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 1.2e-58 229.9 144 81.2
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 6.6e-57 224.2 144 79.9
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 3.6e-39 165.2 144 58.3
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 2.0e-37 159.5 144 59.0
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 5.8e-37 157.9 146 60.3
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 7.5e-37 157.5 143 61.5
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 9.9e-37 157.1 144 58.3
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 9.9e-37 157.1 144 58.3
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 2.2e-36 156.0 143 58.7
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 2.9e-36 155.6 144 61.1
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 4.9e-36 154.8 143 58.0
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 2.4e-35 152.5 142 57.7
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 7.1e-35 151.0 144 61.8
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 2.7e-34 149.1 146 61.6
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 3.5e-34 148.7 132 61.4
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 6.0e-34 147.9 142 62.0
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 7.8e-34 147.5 147 59.9
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 3.9e-33 145.2 140 55.7
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 3.9e-33 145.2 143 59.4
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 6.6e-33 144.4 99 68.7
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 1.5e-32 143.3 142 59.9
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 1.9e-32 142.9 142 57.0
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 2.5e-32 142.5 140 56.4
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 3.3e-32 142.1 144 56.9
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 3.3e-32 142.1 141 54.6
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 2.8e-31 139.0 138 58.7
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 4.7e-31 138.3 151 52.3
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 4.7e-31 138.3 116 57.8
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 8.1e-31 137.5 143 54.5
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 1.4e-30 136.7 141 53.9
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 1.8e-30 136.3 125 57.6
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 2.4e-30 136.0 142 54.2
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 2.4e-30 136.0 142 57.0
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 3.1e-30 135.6 143 52.4
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 3.1e-30 135.6 143 53.1
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 4.0e-30 135.2 143 52.4
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 5.2e-30 134.8 88 70.5
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 5.2e-30 134.8 147 53.1
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 6.8e-30 134.4 143 53.1
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 6.8e-30 134.4 144 52.8
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 8.9e-30 134.0 140 54.3
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 8.9e-30 134.0 149 49.7
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 1.2e-29 133.7 110 59.1
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 1.2e-29 133.7 143 49.7
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 1.2e-29 133.7 160 49.4
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 1.5e-29 133.3 140 52.9
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.5e-29 133.3 138 55.8
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 1.5e-29 133.3 144 56.2
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 2.0e-29 132.9 143 54.5
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 2.6e-29 132.5 142 53.5
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 2.6e-29 132.5 142 53.5
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 3.4e-29 132.1 145 53.8
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 3.4e-29 132.1 143 49.0
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 4.4e-29 131.7 100 64.0
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 1.7e-28 129.8 145 50.3
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 2.9e-28 129.0 143 53.8
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 2.9e-28 129.0 142 52.8
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 3.8e-28 128.6 143 51.0
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 3.8e-28 128.6 144 49.3
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 3.8e-28 128.6 141 53.2
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 1.1e-27 127.1 147 53.1
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 1.4e-27 126.7 145 53.1
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 1.4e-27 126.7 145 51.7
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 1.9e-27 126.3 139 51.8
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 1.9e-27 126.3 139 51.8
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 1.9e-27 126.3 139 51.8
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 1.9e-27 126.3 139 51.8
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 1.9e-27 126.3 138 51.4
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 1.9e-27 126.3 137 53.3
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 1.9e-27 126.3 144 52.1
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 2.4e-27 125.9 147 50.3
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 2.4e-27 125.9 96 60.4
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 3.2e-27 125.6 93 66.7
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 5.4e-27 124.8 117 54.7
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 7.1e-27 124.4 140 52.1
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 9.2e-27 124.0 145 49.7
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 1.2e-26 123.6 149 51.0
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 1.6e-26 123.2 150 47.3
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 1.6e-26 123.2 144 48.6
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 3.5e-26 122.1 119 51.3
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 6.0e-26 121.3 94 59.6
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 7.8e-26 120.9 144 49.3
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 7.8e-26 120.9 146 51.4
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 1.3e-25 120.2 144 47.9
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 2.3e-25 119.4 140 46.4
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 2.3e-25 119.4 79 69.6
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 5.1e-25 118.2 78 69.2
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 8.7e-25 117.5 101 61.4
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 1.1e-24 117.1 135 46.7
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 4.3e-24 115.2 134 48.5
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 5.6e-24 114.8 78 67.9
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 1.6e-23 113.2 134 49.3
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 3.6e-23 112.1 147 47.6
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 3.6e-23 112.1 78 66.7
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 4.7e-23 111.7 111 57.7
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 6.2e-23 111.3 120 51.7
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 1.1e-22 110.5 95 54.7
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 1.1e-22 110.5 82 65.9
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 1.4e-22 110.2 146 47.3
HanXRQChr16g0499601 Helianthus annuus HOM05D006427 ORTHO05D008147 3.1e-22 109.0 135 50.4
SEGI_30338 Sequoiadendron giganteum HOM05D006427 ORTHO05D008147 5.2e-22 108.2 147 47.6
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 6.9e-22 107.8 88 55.7
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 4.4e-21 105.1 119 51.3
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 5.8e-21 104.8 141 46.8
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 1.3e-20 103.6 119 51.3
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 6.4e-20 101.3 91 51.6
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 6.4e-20 101.3 91 51.6
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 8.4e-20 100.9 77 63.6
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 1.4e-19 100.1 150 45.3
CBR_g20422 Chara braunii HOM05D006427 ORTHO05D008147 1.9e-19 99.8 114 44.7
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 4.6e-18 95.1 71 62.0
Mapoly0029s0093 Marchantia polymorpha HOM05D006427 ORTHO05D008147 1.3e-17 93.6 115 46.1
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 3.0e-17 92.4 120 45.0
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 1.1e-16 90.5 114 45.6
Zm00001eb138400 Zea mays HOM05D000461 ORTHO05D008147 3.6e-15 85.5 86 47.7
Hund04203 Selenicereus undatus HOM05D006427 ORTHO05D008147 1.1e-14 84.0 71 63.4
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 1.4e-14 83.6 73 58.9
Zm00001eb182180 Zea mays HOM05D006427 ORTHO05D008147 1.4e-14 83.6 81 50.6
Aqoxy5G03161 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 4.9e-12 75.1 69 56.5
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 5.4e-11 71.6 121 39.7
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 9.3e-11 70.9 69 52.2
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 3.5e-10 68.9 114 38.6
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 2.5e-08 62.8 128 38.3
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 1.3e-07 60.5 112 40.2
Zm00001eb390880 Zea mays HOM05D001191 ORTHO05D000979 1.3e-07 60.5 74 43.2
BolC2t11399H Brassica oleracea HOM05D006427 ORTHO05D008147 2.8e-07 59.3 109 39.4
Atru.chr1.3017 Acer truncatum HOM05D006427 ORTHO05D008147 2.4e-06 56.2 93 44.1


User provided reference genes

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