Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 4.8e-70 267.7 134 100.0
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 2.3e-64 248.8 136 93.4
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 4.0e-64 248.1 137 92.7
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 6.7e-64 247.3 136 93.4
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 5.7e-63 244.2 137 91.2
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 7.0e-61 237.3 138 86.2
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 7.0e-61 237.3 138 86.2
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 9.1e-61 236.9 139 84.9
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 9.1e-61 236.9 139 84.9
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 2.2e-59 232.3 138 81.9
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 2.2e-59 232.3 136 82.4
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 5.0e-59 231.1 136 84.6
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 5.0e-59 231.1 136 82.4
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 8.5e-59 230.3 138 82.6
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 8.5e-59 230.3 136 82.4
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.1e-58 229.9 136 82.4
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 1.5e-58 229.6 137 82.5
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 4.2e-58 228.0 138 82.6
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 4.2e-58 228.0 134 83.6
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 9.4e-58 226.9 137 81.0
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 9.4e-58 226.9 136 82.4
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 1.2e-57 226.5 139 77.7
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 1.2e-57 226.5 138 78.3
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 1.6e-57 226.1 137 81.8
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 2.1e-57 225.7 138 79.0
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 2.7e-57 225.3 138 79.7
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 2.7e-57 225.3 136 80.1
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 3.6e-57 224.9 136 80.1
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 3.6e-57 224.9 137 79.6
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 4.7e-57 224.6 131 84.7
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 6.1e-57 224.2 134 82.1
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 6.1e-57 224.2 136 79.4
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 6.1e-57 224.2 138 78.3
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 6.1e-57 224.2 138 78.3
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 6.1e-57 224.2 136 79.4
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 8.0e-57 223.8 131 84.0
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 1.0e-56 223.4 134 79.9
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 1.4e-56 223.0 137 79.6
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 1.4e-56 223.0 137 78.8
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 2.3e-56 222.2 134 82.8
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 2.3e-56 222.2 139 77.7
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 3.0e-56 221.9 134 79.9
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 3.0e-56 221.9 136 80.1
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 4.0e-56 221.5 135 80.7
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 6.8e-56 220.7 136 77.9
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 6.8e-56 220.7 136 77.9
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 8.8e-56 220.3 137 78.1
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 1.2e-55 219.9 136 79.4
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 1.5e-55 219.5 137 77.4
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 1.5e-55 219.5 134 79.1
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 2.0e-55 219.2 135 79.3
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 2.6e-55 218.8 134 79.9
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 2.6e-55 218.8 136 81.6
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 3.4e-55 218.4 138 78.3
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 4.4e-55 218.0 137 78.1
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 4.4e-55 218.0 138 77.5
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 5.7e-55 217.6 137 78.8
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 5.7e-55 217.6 138 77.5
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 5.7e-55 217.6 134 79.1
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 7.5e-55 217.2 139 77.7
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 7.5e-55 217.2 136 77.9
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 7.5e-55 217.2 136 79.4
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 3.7e-54 214.9 136 77.2
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 4.8e-54 214.5 136 79.4
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 8.3e-54 213.8 147 73.5
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 1.8e-53 212.6 136 73.5
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 4.1e-53 211.5 136 77.2
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 5.4e-53 211.1 136 75.7
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 7.0e-53 210.7 137 76.6
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 9.1e-53 210.3 132 78.8
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 1.6e-52 209.5 137 73.7
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 2.7e-52 208.8 136 74.3
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 2.9e-51 205.3 138 73.2
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 5.0e-51 204.5 138 72.5
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 6.5e-51 204.1 136 72.1
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 6.5e-51 204.1 138 75.4
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 6.5e-51 204.1 133 74.4
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 8.5e-51 203.8 143 69.9
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 3.2e-50 201.8 136 74.3
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 4.2e-50 201.4 136 73.5
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 4.2e-50 201.4 136 73.5
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 7.2e-50 200.7 136 74.3
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 1.2e-49 199.9 139 71.9
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 1.6e-49 199.5 137 72.3
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 1.6e-49 199.5 136 69.9
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 2.1e-49 199.1 146 69.9
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 2.1e-49 199.1 146 69.9
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 2.1e-49 199.1 146 69.9
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 2.1e-49 199.1 146 69.9
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 2.1e-49 199.1 136 71.3
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 6.1e-49 197.6 138 70.3
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 1.0e-48 196.8 137 70.8
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 5.2e-48 194.5 137 70.8
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 5.2e-48 194.5 119 73.9
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 1.2e-47 193.4 136 71.3
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 4.4e-47 191.4 114 76.3
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 1.7e-46 189.5 115 75.7
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 2.8e-46 188.7 115 75.7
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 2.8e-46 188.7 114 76.3
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 4.9e-46 188.0 115 74.8
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 4.9e-46 188.0 114 76.3
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 8.3e-46 187.2 130 72.3
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 8.3e-46 187.2 115 74.8
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 1.4e-45 186.4 143 67.8
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 1.4e-45 186.4 119 81.5
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 4.1e-45 184.9 114 73.7
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 1.6e-44 183.0 128 68.8
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 1.6e-44 183.0 128 68.8
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 2.0e-44 182.6 108 78.7
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 3.5e-44 181.8 108 75.9
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 3.5e-44 181.8 108 75.9
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 3.5e-44 181.8 108 75.9
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 4.5e-44 181.4 129 68.2
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 1.0e-43 180.3 108 75.0
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 1.0e-43 180.3 108 75.0
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 2.3e-43 179.1 120 66.7
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 3.8e-43 178.3 118 67.8
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 7.2e-42 174.1 139 65.5
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 1.4e-40 169.9 113 76.1
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 1.5e-39 166.4 98 75.5
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 1.1e-37 160.2 93 73.1
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 7.8e-36 154.1 137 62.0
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 2.9e-35 152.1 126 58.7
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 4.3e-34 148.3 120 69.2
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 6.8e-32 141.0 84 72.6
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 3.7e-30 135.2 125 56.8
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 1.1e-29 133.7 132 55.3
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.7e-28 129.0 59 96.6
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 1.3e-27 126.7 110 55.5
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 3.0e-27 125.6 126 50.8
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 1.9e-26 122.9 72 73.6
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 7.3e-26 120.9 72 81.9
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 3.6e-25 118.6 136 52.2
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 2.0e-23 112.8 81 75.3
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 4.1e-21 105.1 102 52.0
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 1.2e-20 103.6 53 88.7
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 2.1e-20 102.8 70 67.1
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 2.7e-20 102.4 77 63.6
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 1.7e-19 99.8 104 48.1
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 2.3e-19 99.4 74 75.7
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 3.9e-19 98.6 59 67.8
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 5.2e-16 88.2 59 66.1
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 2.6e-15 85.9 80 57.5
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 8.4e-14 80.9 105 40.0
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 1.1e-13 80.5 80 52.5
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 6.0e-12 74.7 140 37.9
MELO3C033488.2 Cucumis melo HOM05D005190 ORTHO05D006183 1.1e-10 70.5 86 58.1
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 8.1e-09 64.3 81 42.0


User provided reference genes

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