Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026932 Sechium edule HOM05D007304 ORTHO05D009233 9.4e-124 446.8 217 100.0
MELO3C008119.2 Cucumis melo HOM05D007304 ORTHO05D009233 4.0e-106 388.3 217 86.2
ClCG11G008190 Citrullus lanatus HOM05D007304 ORTHO05D009233 2.0e-105 386.0 217 84.3
CsaV3_2G033470 Cucumis sativus L. HOM05D007304 ORTHO05D009233 5.4e-103 377.9 217 83.9
Cfa018186 Carpinus fangiana HOM05D007304 ORTHO05D009233 1.2e-83 313.5 217 67.3
Manes.02G191500 Manihot esculenta HOM05D007304 ORTHO05D009233 6.2e-83 311.2 217 65.4
CiPaw.16G062000 Carya illinoinensis HOM05D007304 ORTHO05D009233 1.2e-81 307.0 217 67.7
Thecc.08G182300 Theobroma cacao HOM05D007304 ORTHO05D009233 1.9e-79 299.7 217 64.1
QL02p033889 Quercus lobata HOM05D007304 ORTHO05D009233 5.4e-79 298.1 217 65.9
CSS0049262 Camellia sinensis var. sinensis HOM05D007304 ORTHO05D009233 3.5e-78 295.4 217 65.9
Atru.chr13.1788 Acer truncatum HOM05D007304 ORTHO05D009233 7.8e-78 294.3 217 62.7
Atru.chr13.1792 Acer truncatum HOM05D007304 ORTHO05D009233 7.8e-78 294.3 217 62.7
Duzib177G0769 Durio zibethinus HOM05D007304 ORTHO05D009233 6.6e-77 291.2 217 63.6
RhsimUnG0069500 Rhododendron simsii HOM05D007304 ORTHO05D009233 2.1e-75 286.2 217 64.5
Haze_17932 Corylus avellana HOM05D007304 ORTHO05D009233 2.8e-75 285.8 192 67.7
Potri.013G113500 Populus trichocarpa HOM05D007304 ORTHO05D009233 2.8e-75 285.8 217 62.2
Rhsim11G0060100 Rhododendron simsii HOM05D007304 ORTHO05D009233 3.6e-75 285.4 217 64.5
GSVIVG01034475001 Vitis vinifera HOM05D007304 ORTHO05D009233 1.1e-74 283.9 217 61.8
TPR.G8829 Trifolium pratense HOM05D007304 ORTHO05D009233 1.8e-74 283.1 217 61.8
Lj5g0021067 Lotus japonicus HOM05D007304 ORTHO05D009233 1.2e-73 280.4 219 59.8
Ciclev10002467m.g Citrus clementina HOM05D007304 ORTHO05D009233 2.0e-73 279.6 217 60.4
COL.COLO4_22675 Corchorus olitorius HOM05D007304 ORTHO05D009233 4.4e-73 278.5 195 64.1
Lalb_Chr06g0162071 Lupinus albus HOM05D007304 ORTHO05D009233 9.8e-73 277.3 217 57.6
FAN13G2406 Fragaria x ananassa HOM05D007304 ORTHO05D009233 1.7e-72 276.6 217 62.2
MSTRG.22445 Avicennia marina HOM05D007304 ORTHO05D009233 2.2e-72 276.2 217 59.0
SalBow6G2896 Salvia bowleyana HOM05D007304 ORTHO05D009233 2.2e-72 276.2 218 59.6
FAN04G0833 Fragaria x ananassa HOM05D007304 ORTHO05D009233 2.9e-72 275.8 217 62.2
TAR376G0332 Trochodendron aralioides HOM05D007304 ORTHO05D009233 2.9e-72 275.8 222 61.3
THA.LOC104816302 Tarenaya hassleriana HOM05D007304 ORTHO05D009233 3.7e-72 275.4 217 62.7
Gorai.005G074700 Gossypium raimondii HOM05D007304 ORTHO05D009233 8.3e-72 274.2 217 60.8
FvH4_5g27630 Fragaria vesca HOM05D007304 ORTHO05D009233 1.1e-71 273.9 217 61.8
Gohir.A02G060400 Gossypium hirsutum HOM05D007304 ORTHO05D009233 9.2e-71 270.8 217 60.4
Dinv41708 Davidia involucrata HOM05D007304 ORTHO05D009233 1.6e-70 270.0 204 63.7
Ca_10612_v3 Cicer arietinum L. HOM05D007304 ORTHO05D009233 2.1e-70 269.6 217 59.9
RcHm_v2.0_Chr7g0219041 Rosa chinensis HOM05D007304 ORTHO05D009233 3.5e-70 268.9 218 61.5
Glyma.20G175900 Glycine max HOM05D007304 ORTHO05D009233 4.6e-70 268.5 217 55.8
VMungo0720G1999 Vigna mungo HOM05D007304 ORTHO05D009233 4.6e-70 268.5 217 56.2
arahy.Tifrunner.gnm1.ann1.E78XAF Arachis hypogaea HOM05D007304 ORTHO05D009233 6.0e-70 268.1 217 60.4
Medtr1g096340 Medicago truncatula HOM05D007304 ORTHO05D009233 6.0e-70 268.1 217 58.5
CANSAT25G3778 Cannabis sativa HOM05D007304 ORTHO05D009233 7.8e-70 267.7 217 59.9
Migut.N03345 Erythranthe guttata HOM05D007304 ORTHO05D009233 1.7e-69 266.5 217 58.1
arahy.Tifrunner.gnm1.ann1.W17VPE Arachis hypogaea HOM05D007304 ORTHO05D009233 2.3e-69 266.2 217 59.9
Oeu039601.1 Olea europaea HOM05D007304 ORTHO05D009233 3.0e-69 265.8 221 59.7
Cc10_g11390 Coffea canephora HOM05D007304 ORTHO05D009233 5.1e-69 265.0 202 61.4
TWI32G0836 Tripterygium wilfordii HOM05D007304 ORTHO05D009233 5.1e-69 265.0 215 60.5
Psat6g187320 Pisum sativum HOM05D007304 ORTHO05D009233 1.1e-68 263.8 219 58.0
Sopen11g009380 Solanum pennellii HOM05D007304 ORTHO05D009233 1.5e-68 263.5 219 58.4
Phvul.007G089900 Phaseolus vulgaris HOM05D007304 ORTHO05D009233 1.9e-68 263.1 217 56.7
PGSC0003DMG400009226 Solanum tuberosum HOM05D007304 ORTHO05D009233 5.6e-68 261.5 219 58.0
PGR102G2268 Punica granatum HOM05D007304 ORTHO05D009233 7.3e-68 261.2 223 58.3
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 1.6e-67 260.0 202 62.9
DCAR_011537 Daucus carota HOM05D007304 ORTHO05D009233 2.8e-67 259.2 194 59.8
AUR62004650 Chenopodium quinoa HOM05D007304 ORTHO05D009233 6.2e-67 258.1 217 57.1
MD05G1041300 Malus domestica HOM05D007304 ORTHO05D009233 6.2e-67 258.1 159 71.7
Nn5g27732 Nelumbo nucifera HOM05D007304 ORTHO05D009233 6.2e-67 258.1 210 57.6
CAN.G1530.5 Capsicum annuum HOM05D007304 ORTHO05D009233 2.3e-66 256.1 218 56.4
Carub.0006s2806 Capsella rubella HOM05D007304 ORTHO05D009233 3.1e-66 255.8 224 57.6
Lj4P501T9 Lonicera japonica HOM05D007304 ORTHO05D009233 3.1e-66 255.8 159 70.4
AUR62023569 Chenopodium quinoa HOM05D007304 ORTHO05D009233 5.2e-66 255.0 218 56.9
AL6G43210 Arabidopsis lyrata HOM05D007304 ORTHO05D009233 6.8e-66 254.6 223 59.2
CARHR260470 Cardamine hirsuta HOM05D007304 ORTHO05D009233 8.9e-66 254.2 219 59.4
Nitab4.5_0000560g0190 Nicotiana tabacum HOM05D007304 ORTHO05D009233 8.9e-66 254.2 220 57.3
Peaxi162Scf00310g00614 Petunia axillaris HOM05D007304 ORTHO05D009233 1.2e-65 253.8 219 56.6
SGA_v2.0_scaffold149G36602 Striga asiatica HOM05D007304 ORTHO05D009233 1.5e-65 253.4 219 55.3
BraA03t12064Z Brassica rapa HOM05D007304 ORTHO05D009233 2.0e-65 253.1 218 58.7
Aqoxy5G02599 Aquilegia oxysepala HOM05D007304 ORTHO05D009233 2.6e-65 252.7 158 69.6
Gohir.D02G065833 Gossypium hirsutum HOM05D007304 ORTHO05D009233 3.4e-65 252.3 194 61.3
BcaC01g04711 Brassica carinata HOM05D007304 ORTHO05D009233 7.6e-65 251.1 223 58.7
Hund27084 Selenicereus undatus HOM05D007304 ORTHO05D009233 7.6e-65 251.1 218 57.3
A03p28640 Brassica napus HOM05D007304 ORTHO05D009233 9.9e-65 250.8 218 58.3
C03p34620 Brassica napus HOM05D007304 ORTHO05D009233 9.9e-65 250.8 223 58.7
BolC3t15773H Brassica oleracea HOM05D007304 ORTHO05D009233 9.9e-65 250.8 223 58.7
PSO063G3154 Papaver somniferum HOM05D007304 ORTHO05D009233 9.9e-65 250.8 217 54.8
Nitab4.5_0000422g0040 Nicotiana tabacum HOM05D007304 ORTHO05D009233 2.2e-64 249.6 220 56.4
AT4G09620 Arabidopsis thaliana HOM05D007304 ORTHO05D009233 3.8e-64 248.8 220 58.2
Sp6g07990 Schrenkiella parvula HOM05D007304 ORTHO05D009233 3.8e-64 248.8 217 57.6
EL10Ac8g20249 Beta vulgaris HOM05D007304 ORTHO05D009233 6.4e-64 248.1 223 56.1
PSO017G3329 Papaver somniferum HOM05D007304 ORTHO05D009233 8.4e-64 247.7 219 53.9
Thhalv10028979m.g Eutrema salsugineum HOM05D007304 ORTHO05D009233 1.1e-63 247.3 219 57.1
ECA246G3843 Erigeron canadensis HOM05D007304 ORTHO05D009233 2.4e-63 246.1 220 57.3
Lsat_1_v5_gn_6_109640 Lactuca sativa HOM05D007304 ORTHO05D009233 2.4e-63 246.1 217 54.4
Ah.07g202740 Amaranthus hybridus HOM05D007304 ORTHO05D009233 3.2e-63 245.7 217 55.8
MBI17_g27205_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 7.1e-63 244.6 223 56.5
Sabra13G0096200 Salix brachista HOM05D007304 ORTHO05D009233 3.9e-61 238.8 255 49.0
HanXRQChr05g0150521 Helianthus annuus HOM05D007304 ORTHO05D009233 1.5e-60 236.9 217 54.8
Aa31LG9G14900 Aethionema arabicum HOM05D007304 ORTHO05D009233 2.0e-57 226.5 217 53.5
HPP92_003142 Vanilla planifolia HOM05D007304 ORTHO05D009233 1.4e-55 220.3 145 66.9
Sc26g0000380 Simmondsia chinensis HOM05D007304 ORTHO05D009233 2.4e-55 219.5 157 59.2
SEGI_32747 Sequoiadendron giganteum HOM05D007304 ORTHO05D009233 4.6e-54 215.3 141 68.8
Os03g0838900 Oryza sativa ssp. japonica HOM05D007304 ORTHO05D009233 1.5e-52 210.3 219 48.9
Eucgr.F04126 Eucalyptus grandis HOM05D007304 ORTHO05D009233 7.3e-52 208.0 187 56.1
Zm00001eb063940 Zea mays HOM05D007304 ORTHO05D009233 4.8e-51 205.3 163 59.5
SMO200G0124 Selaginella moellendorffii HOM05D007304 ORTHO05D009233 2.5e-44 183.0 134 56.0
BcaB01g02784 Brassica carinata HOM05D007304 ORTHO05D009233 7.4e-44 181.4 233 44.6
unitig_21.g20192 Utricularia gibba HOM05D007304 ORTHO05D009233 1.3e-43 180.6 172 49.4
Cpa.g.sc66.48 Carica papaya HOM05D007304 ORTHO05D009233 2.8e-43 179.5 116 68.1
Mapoly0175s0009 Marchantia polymorpha HOM05D007304 ORTHO05D009233 1.1e-39 167.5 143 49.7
Prupe.8G057100 Prunus persica HOM05D007304 ORTHO05D009233 1.1e-36 157.5 147 53.1
AagrBONN_evm.TU.Sc2ySwM_117.12 Anthoceros agrestis HOM05D007304 ORTHO05D009233 4.3e-36 155.6 152 46.7
Pp3c24_12240 Physcomitrium patens HOM05D007304 ORTHO05D009233 5.3e-34 148.7 138 47.8
SalBow6G1917 Salvia bowleyana HOM05D007304 ORTHO05D009233 4.2e-31 139.0 139 50.4
Cre10.g445100 Chlamydomonas reinhardtii HOM05D007304 ORTHO05D009233 4.3e-28 129.0 145 40.7
CDE02G2755 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.6e-27 127.1 82 67.1
MCO03G180 Micromonas commoda HOM05D007304 ORTHO05D009233 1.6e-22 110.5 172 38.4
Solyc11g017430.3 Solanum lycopersicum HOM05D007304 ORTHO05D009233 5.1e-21 105.5 52 80.8
MBI11_g39361_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 8.5e-16 88.2 54 75.9
MD10G1047700 Malus domestica HOM05D007304 ORTHO05D009233 7.9e-14 81.6 44 79.5
Zm00001eb272990 Zea mays HOM05D007304 ORTHO05D009233 1.9e-07 60.5 71 45.1


User provided reference genes

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