Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026617 Sechium edule HOM05D002925 ORTHO05D003247 3.0e-121 438.7 256 100.0
ClCG08G011160 Citrullus lanatus HOM05D002925 ORTHO05D003247 1.4e-78 297.0 230 73.9
MELO3C011031.2 Cucumis melo HOM05D002925 ORTHO05D003247 2.3e-73 279.6 213 75.1
CsaV3_2G029730 Cucumis sativus L. HOM05D002925 ORTHO05D003247 6.8e-73 278.1 236 70.8
Haze_22282 Corylus avellana HOM05D002925 ORTHO05D003247 8.4e-31 138.3 194 43.8
CiPaw.07G178900 Carya illinoinensis HOM05D002925 ORTHO05D003247 5.5e-30 135.6 191 45.0
Cfa013644 Carpinus fangiana HOM05D002925 ORTHO05D003247 7.1e-30 135.2 193 45.1
PGR031G1025 Punica granatum HOM05D002925 ORTHO05D003247 1.3e-26 124.4 190 43.2
QL12p036977 Quercus lobata HOM05D002925 ORTHO05D003247 6.2e-26 122.1 205 45.9
Manes.18G066500 Manihot esculenta HOM05D002925 ORTHO05D003247 5.8e-24 115.5 222 42.3
vmacro21264 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 7.6e-24 115.2 179 44.1
CSS0032438 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 3.8e-23 112.8 207 39.6
Rhsim06G0081200 Rhododendron simsii HOM05D002925 ORTHO05D003247 6.5e-23 112.1 184 43.5
Cpa.g.sc53.130 Carica papaya HOM05D002925 ORTHO05D003247 8.4e-23 111.7 194 42.8
RcHm_v2.0_Chr7g0243951 Rosa chinensis HOM05D002925 ORTHO05D003247 1.4e-22 110.9 189 42.9
Ciclev10000205m.g Citrus clementina HOM05D002925 ORTHO05D003247 3.2e-22 109.8 182 42.9
Prupe.1G518500 Prunus persica HOM05D002925 ORTHO05D003247 3.2e-22 109.8 218 41.3
Actinidia33129 Actinidia chinensis HOM05D002925 ORTHO05D003247 9.3e-22 108.2 184 44.0
Duzib116G0838 Durio zibethinus HOM05D002925 ORTHO05D003247 1.2e-21 107.8 180 44.4
Sabra02G0076700 Salix brachista HOM05D002925 ORTHO05D003247 1.2e-21 107.8 208 39.9
COL.COLO4_16382 Corchorus olitorius HOM05D002925 ORTHO05D003247 1.6e-21 107.5 180 42.2
MD08G1184300 Malus domestica HOM05D002925 ORTHO05D003247 1.6e-21 107.5 202 40.1
Duzib093G1387 Durio zibethinus HOM05D002925 ORTHO05D003247 2.1e-21 107.1 208 41.8
Potri.005G164100 Populus trichocarpa HOM05D002925 ORTHO05D003247 6.0e-21 105.5 209 41.6
Phvul.009G031600 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 1.3e-20 104.4 178 41.0
TWI56G0820 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 1.3e-20 104.4 200 41.0
MSTRG.24975 Avicennia marina HOM05D002925 ORTHO05D003247 3.0e-20 103.2 185 41.1
Aqoxy6G00762 Aquilegia oxysepala HOM05D002925 ORTHO05D003247 3.9e-20 102.8 201 35.8
Migut.C00133 Erythranthe guttata HOM05D002925 ORTHO05D003247 6.7e-20 102.1 193 40.4
MD00G1009700 Malus domestica HOM05D002925 ORTHO05D003247 8.7e-20 101.7 198 43.9
CANSAT25G0699 Cannabis sativa HOM05D002925 ORTHO05D003247 2.5e-19 100.1 186 40.9
Hund26967 Selenicereus undatus HOM05D002925 ORTHO05D003247 2.5e-19 100.1 190 38.4
VMungo1309G2842 Vigna mungo HOM05D002925 ORTHO05D003247 3.3e-19 99.8 179 40.8
Gohir.A01G127000 Gossypium hirsutum HOM05D002925 ORTHO05D003247 4.3e-19 99.4 181 42.0
Gohir.D01G114901 Gossypium hirsutum HOM05D002925 ORTHO05D003247 4.3e-19 99.4 181 42.0
Gorai.002G140700 Gossypium raimondii HOM05D002925 ORTHO05D003247 4.3e-19 99.4 181 42.0
Glyma.06G102900 Glycine max HOM05D002925 ORTHO05D003247 7.4e-19 98.6 169 40.8
SalBow7G1697 Salvia bowleyana HOM05D002925 ORTHO05D003247 9.7e-19 98.2 180 42.2
Dinv14338 Davidia involucrata HOM05D002925 ORTHO05D003247 2.2e-18 97.1 162 41.4
FAN13G2209 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.2e-18 97.1 185 40.5
FvH4_5g37120 Fragaria vesca HOM05D002925 ORTHO05D003247 2.8e-18 96.7 176 43.8
FAN18G3145 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.8e-18 96.7 175 44.0
AUR62018927 Chenopodium quinoa HOM05D002925 ORTHO05D003247 3.7e-18 96.3 151 43.7
Sopen04g029390 Solanum pennellii HOM05D002925 ORTHO05D003247 3.7e-18 96.3 200 39.0
PGSC0003DMG400006417 Solanum tuberosum HOM05D002925 ORTHO05D003247 3.7e-18 96.3 200 39.0
Glyma.04G101200 Glycine max HOM05D002925 ORTHO05D003247 6.3e-18 95.5 169 42.0
Solyc04g074250.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 8.2e-18 95.1 199 37.2
Oeu029761.1 Olea europaea HOM05D002925 ORTHO05D003247 2.4e-17 93.6 201 36.8
unitig_8.g5045 Utricularia gibba HOM05D002925 ORTHO05D003247 3.1e-17 93.2 202 38.6
GSVIVG01009040001 Vitis vinifera HOM05D002925 ORTHO05D003247 3.1e-17 93.2 197 37.6
AUR62027772 Chenopodium quinoa HOM05D002925 ORTHO05D003247 6.9e-17 92.0 148 42.6
Dinv44782 Davidia involucrata HOM05D002925 ORTHO05D003247 6.9e-17 92.0 165 40.0
FAN08G0410 Fragaria x ananassa HOM05D002925 ORTHO05D003247 9.0e-17 91.7 182 41.8
Nitab4.5_0000232g0050 Nicotiana tabacum HOM05D002925 ORTHO05D003247 2.6e-16 90.1 137 46.7
FAN04G0469 Fragaria x ananassa HOM05D002925 ORTHO05D003247 4.5e-16 89.4 174 40.8
Nitab4.5_0006616g0010 Nicotiana tabacum HOM05D002925 ORTHO05D003247 4.5e-16 89.4 137 46.7
Atru.chr10.1121 Acer truncatum HOM05D002925 ORTHO05D003247 1.0e-15 88.2 198 40.4
TAR076G0002 Trochodendron aralioides HOM05D002925 ORTHO05D003247 1.3e-15 87.8 129 44.2
ECA232G0543 Erigeron canadensis HOM05D002925 ORTHO05D003247 2.9e-15 86.7 135 45.2
HanXRQChr05g0145421 Helianthus annuus HOM05D002925 ORTHO05D003247 5.0e-15 85.9 122 45.9
Peaxi162Scf00392g00416 Petunia axillaris HOM05D002925 ORTHO05D003247 5.0e-15 85.9 195 37.4
Nn1g05384 Nelumbo nucifera HOM05D002925 ORTHO05D003247 8.5e-15 85.1 127 44.1
Oeu024826.1 Olea europaea HOM05D002925 ORTHO05D003247 8.5e-15 85.1 196 38.3
EL10Ac1g01207 Beta vulgaris HOM05D002925 ORTHO05D003247 1.1e-14 84.7 135 43.0
Ah.05g169890 Amaranthus hybridus HOM05D002925 ORTHO05D003247 1.4e-14 84.3 121 47.1
Sc23g0000240 Simmondsia chinensis HOM05D002925 ORTHO05D003247 1.4e-14 84.3 134 42.5
HanXRQChr02g0043481 Helianthus annuus HOM05D002925 ORTHO05D003247 2.5e-14 83.6 200 38.5
Nn5g30080 Nelumbo nucifera HOM05D002925 ORTHO05D003247 2.5e-14 83.6 133 41.4
PSO447G0391 Papaver somniferum HOM05D002925 ORTHO05D003247 3.2e-14 83.2 218 36.7
SGA_v2.0_scaffold74G24580 Striga asiatica HOM05D002925 ORTHO05D003247 5.5e-14 82.4 129 45.0
AT1G22310 Arabidopsis thaliana HOM05D002925 ORTHO05D003247 1.6e-13 80.9 175 38.3
Lsat_1_v5_gn_1_3860 Lactuca sativa HOM05D002925 ORTHO05D003247 1.6e-13 80.9 196 32.7
MBI02_g35745_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 1.6e-13 80.9 130 40.8
Carub.0001s2186 Capsella rubella HOM05D002925 ORTHO05D003247 2.7e-13 80.1 218 34.4
Cc10_g07100 Coffea canephora HOM05D002925 ORTHO05D003247 2.7e-13 80.1 139 43.9
PSO531G0001 Papaver somniferum HOM05D002925 ORTHO05D003247 2.7e-13 80.1 220 36.8
PGSC0003DMG400036857 Solanum tuberosum HOM05D002925 ORTHO05D003247 2.7e-13 80.1 172 40.7
TAR625G1540 Trochodendron aralioides HOM05D002925 ORTHO05D003247 4.6e-13 79.3 192 37.5
CDE10G0644 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 7.9e-13 78.6 125 44.0
AL1G35760 Arabidopsis lyrata HOM05D002925 ORTHO05D003247 1.4e-12 77.8 177 39.5
arahy.Tifrunner.gnm1.ann1.8R41I4 Arachis hypogaea HOM05D002925 ORTHO05D003247 1.4e-12 77.8 172 37.2
CDE10G0684 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 1.8e-12 77.4 180 34.4
Lj1g0024313 Lotus japonicus HOM05D002925 ORTHO05D003247 1.8e-12 77.4 202 37.1
BolC7t42671H Brassica oleracea HOM05D000298 ORTHO05D003247 2.3e-12 77.0 182 36.8
Sopen02g012230 Solanum pennellii HOM05D002925 ORTHO05D003247 2.3e-12 77.0 121 44.6
arahy.Tifrunner.gnm1.ann1.66CWE3 Arachis hypogaea HOM05D002925 ORTHO05D003247 3.0e-12 76.6 173 36.4
Sp1g19810 Schrenkiella parvula HOM05D002925 ORTHO05D003247 6.7e-12 75.5 188 40.4
ATR0782G164 Amborella trichopoda HOM05D002925 ORTHO05D003247 8.8e-12 75.1 143 36.4
C07p21440 Brassica napus HOM05D002925 ORTHO05D003247 1.1e-11 74.7 180 36.1
PSO541G2635 Papaver somniferum HOM05D002925 ORTHO05D003247 1.1e-11 74.7 139 43.2
A07p14550 Brassica napus HOM05D002925 ORTHO05D003247 2.5e-11 73.6 177 38.4
BraA07t29201Z Brassica rapa HOM05D002925 ORTHO05D003247 3.3e-11 73.2 177 38.4
MBI02_g36599_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 3.3e-11 73.2 187 33.7
Medtr3g074640 Medicago truncatula HOM05D002925 ORTHO05D003247 4.3e-11 72.8 185 35.1
TPR.G26131 Trifolium pratense HOM05D002925 ORTHO05D003247 4.3e-11 72.8 197 33.5
THA.LOC104800147 Tarenaya hassleriana HOM05D002925 ORTHO05D003247 9.7e-11 71.6 193 39.4
ECA247G0600 Erigeron canadensis HOM05D002925 ORTHO05D003247 1.3e-10 71.2 121 41.3
HPP92_011216 Vanilla planifolia HOM05D002925 ORTHO05D003247 1.7e-10 70.9 88 51.1
BcaB03g14218 Brassica carinata HOM05D002925 ORTHO05D003247 2.2e-10 70.5 178 38.2
Dinv09022 Davidia involucrata HOM05D002925 ORTHO05D003247 2.8e-10 70.1 120 40.8
Lalb_Chr11g0065401 Lupinus albus HOM05D002925 ORTHO05D003247 2.8e-10 70.1 148 37.2
Ca_15252_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 1.1e-09 68.2 194 31.4
Psat5g138880 Pisum sativum HOM05D002925 ORTHO05D003247 1.4e-09 67.8 203 32.0
Thhalv10007200m.g Eutrema salsugineum HOM05D002925 ORTHO05D003247 1.8e-09 67.4 78 55.1
MD05G1043400 Malus domestica HOM05D002925 ORTHO05D003247 2.4e-09 67.0 144 38.2
Nitab4.5_0001619g0030 Nicotiana tabacum HOM05D002925 ORTHO05D003247 9.1e-09 65.1 108 44.4
Prupe.8G062800 Prunus persica HOM05D002925 ORTHO05D003247 9.1e-09 65.1 124 40.3
Nitab4.5_0000863g0180 Nicotiana tabacum HOM05D002925 ORTHO05D003247 2.0e-08 63.9 121 42.1
RcHm_v2.0_Chr6g0271751 Rosa chinensis HOM05D002925 ORTHO05D003247 5.9e-08 62.4 198 32.3
Actinidia24000 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.0e-07 61.6 114 38.6
Zm00001eb101320 Zea mays HOM05D002925 ORTHO05D003247 1.0e-07 61.6 109 40.4
MD10G1050700 Malus domestica HOM05D002925 ORTHO05D003247 1.3e-07 61.2 143 37.1
Dinv10478 Davidia involucrata HOM05D011424 ORTHO05D016274 1.7e-07 60.8 121 36.4
FAN15G3696 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.7e-07 60.8 118 39.0
Aa31LG7G6230 Aethionema arabicum HOM05D002925 ORTHO05D003247 2.2e-07 60.5 208 32.2
CSS0049612 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 2.9e-07 60.1 83 50.6
Peaxi162Scf00001g00002 Petunia axillaris HOM05D002925 ORTHO05D003247 2.9e-07 60.1 91 48.4
Sopen02g012270 Solanum pennellii HOM05D002925 ORTHO05D003247 3.8e-07 59.7 78 48.7
Cc02_g21380 Coffea canephora HOM05D002925 ORTHO05D003247 5.0e-07 59.3 67 53.7
Eucgr.I02657 Eucalyptus grandis HOM05D002925 ORTHO05D003247 6.5e-07 58.9 78 48.7
Hma1.2p1_0522F.1_g171730 Hydrangea macrophylla HOM05D002925 ORTHO05D003247 6.5e-07 58.9 110 38.2
SGA_v2.0_scaffold74G24575 Striga asiatica HOM05D002925 ORTHO05D003247 6.5e-07 58.9 76 48.7
FvH4_2g11920 Fragaria vesca HOM05D002925 ORTHO05D003247 1.1e-06 58.2 109 42.2
FAN24G2963 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.1e-06 58.2 109 42.2
Os08g0485700 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 1.1e-06 58.2 64 56.2
Solyc01g105330.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 1.9e-06 57.4 108 40.7
PGSC0003DMG400012552 Solanum tuberosum HOM05D002925 ORTHO05D003247 1.9e-06 57.4 96 43.8
Os09g0473350 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 2.5e-06 57.0 66 54.5
FAN20G1033 Fragaria x ananassa HOM05D002925 ORTHO05D003247 5.5e-06 55.8 114 38.6
SGA_v2.0_scaffold14G07129 Striga asiatica HOM05D002925 ORTHO05D003247 7.2e-06 55.5 124 39.5
arahy.Tifrunner.gnm1.ann1.M5A3LZ Arachis hypogaea HOM05D002925 ORTHO05D003247 9.4e-06 55.1 90 42.2
TWI59G1115 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 9.4e-06 55.1 186 30.6


User provided reference genes

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