Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 3.0e-131 472.2 308 100.0
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 6.9e-112 407.9 309 81.6
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 9.3e-109 397.5 310 82.3
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 3.0e-107 392.5 311 79.7
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 7.3e-106 387.9 312 80.1
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 4.0e-88 328.9 306 61.4
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 9.0e-88 327.8 306 60.8
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 9.0e-88 327.8 306 72.5
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 1.2e-87 327.4 306 65.7
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 3.4e-87 325.9 309 68.0
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 5.8e-87 325.1 309 71.5
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 5.8e-87 325.1 295 64.1
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 7.6e-87 324.7 305 61.3
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 7.6e-87 324.7 306 61.1
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 1.3e-86 323.9 295 63.7
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.7e-86 323.6 311 70.4
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 3.8e-86 322.4 295 62.4
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 8.4e-86 321.2 306 62.7
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.5e-85 319.7 313 71.9
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 7.1e-85 318.2 307 61.2
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.2e-84 317.4 297 71.4
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 1.2e-84 317.4 307 59.6
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 1.6e-84 317.0 265 68.7
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.1e-84 316.6 294 71.8
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.1e-84 316.6 294 71.8
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.1e-84 316.6 294 71.8
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.7e-84 316.2 294 71.4
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 1.3e-83 313.9 295 61.7
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 2.3e-83 313.2 296 60.8
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 5.1e-83 312.0 311 64.6
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 1.1e-82 310.8 295 66.8
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 2.5e-82 309.7 311 57.2
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 3.3e-82 309.3 306 59.8
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 3.3e-82 309.3 306 64.7
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 1.6e-81 307.0 267 72.3
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.8e-81 306.2 292 70.5
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 1.1e-80 304.3 266 72.6
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 3.1e-80 302.8 312 63.1
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 4.1e-80 302.4 267 62.5
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 6.9e-80 301.6 309 64.4
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 2.6e-79 299.7 266 63.5
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 4.5e-79 298.9 282 65.6
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 7.7e-79 298.1 266 62.4
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 7.7e-79 298.1 306 60.1
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 5.0e-78 295.4 266 68.4
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 4.2e-77 292.4 306 56.2
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 4.2e-77 292.4 295 64.7
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 5.5e-77 292.0 268 61.6
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 5.5e-77 292.0 272 64.0
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.6e-76 290.4 266 62.0
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 1.6e-76 290.4 295 64.4
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 2.1e-76 290.0 265 68.3
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 4.6e-76 288.9 265 65.3
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 6.1e-76 288.5 301 56.8
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 7.9e-76 288.1 304 59.2
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 1.8e-75 287.0 304 59.2
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 3.0e-75 286.2 311 55.0
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 3.9e-75 285.8 291 63.6
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.9e-75 285.8 297 65.7
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 5.1e-75 285.4 302 58.3
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 5.1e-75 285.4 302 58.6
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 6.7e-75 285.0 272 61.4
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 6.7e-75 285.0 266 68.0
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 1.1e-74 284.3 266 63.2
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 2.0e-74 283.5 266 65.4
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 2.0e-74 283.5 266 65.4
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 2.0e-74 283.5 266 65.4
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.0e-74 283.5 287 57.8
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 2.5e-74 283.1 267 64.0
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 2.5e-74 283.1 263 62.4
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 3.3e-74 282.7 266 60.9
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 3.3e-74 282.7 306 57.5
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 5.7e-74 282.0 264 67.0
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 5.7e-74 282.0 266 64.3
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 7.4e-74 281.6 298 66.1
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 7.4e-74 281.6 298 62.4
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 9.7e-74 281.2 306 60.5
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 1.3e-73 280.8 308 59.7
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 2.8e-73 279.6 264 64.0
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 4.8e-73 278.9 305 54.1
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 8.2e-73 278.1 263 65.8
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 1.1e-72 277.7 304 60.9
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 1.4e-72 277.3 303 58.1
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 3.1e-72 276.2 305 58.4
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 5.3e-72 275.4 287 59.6
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.3e-72 275.4 270 64.8
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 6.9e-72 275.0 264 61.0
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 2.6e-71 273.1 266 61.7
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 3.4e-71 272.7 270 58.1
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 5.9e-71 271.9 300 58.0
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.3e-70 270.8 268 63.8
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 1.3e-70 270.8 270 57.8
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 1.7e-70 270.4 302 61.9
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 1.7e-70 270.4 306 54.6
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 5.0e-70 268.9 270 62.2
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 6.5e-70 268.5 270 57.4
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 1.1e-69 267.7 270 63.3
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 1.1e-69 267.7 270 57.0
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 1.9e-69 266.9 308 60.4
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 4.2e-69 265.8 304 60.5
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 5.5e-69 265.4 294 53.7
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 5.5e-69 265.4 270 56.7
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 7.2e-69 265.0 306 52.9
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 7.2e-69 265.0 266 66.5
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 1.2e-68 264.2 265 62.6
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 1.2e-68 264.2 265 62.6
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 1.6e-68 263.8 304 60.2
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 1.6e-68 263.8 265 58.1
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 6.1e-68 261.9 224 63.4
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 7.9e-68 261.5 309 64.7
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 2.3e-67 260.0 306 52.6
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.5e-66 257.3 307 61.6
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 1.5e-66 257.3 259 59.5
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 4.4e-66 255.8 266 58.6
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 2.8e-65 253.1 306 59.2
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 4.8e-65 252.3 266 58.3
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 1.1e-64 251.1 306 59.5
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 1.1e-64 251.1 266 63.9
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.1e-64 249.6 235 73.2
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.2e-63 247.7 241 60.6
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 2.9e-62 243.0 306 57.2
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 5.0e-62 242.3 268 56.7
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 6.5e-62 241.9 260 62.3
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 9.4e-61 238.0 266 62.8
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 3.0e-59 233.0 298 58.7
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.6e-58 229.9 266 55.6
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 7.4e-58 228.4 305 56.4
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.3e-57 227.6 266 58.3
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 1.7e-57 227.3 261 59.8
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 3.5e-55 219.5 250 60.0
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 3.8e-54 216.1 270 54.4
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.0e-54 215.7 258 55.0
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.5e-50 204.1 208 63.9
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 9.7e-50 201.4 266 50.0
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 5.0e-46 189.1 218 55.0
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 6.5e-46 188.7 138 70.3
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 1.4e-43 181.0 248 46.4
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 4.0e-43 179.5 286 51.0
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 5.2e-43 179.1 268 43.7
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 2.0e-42 177.2 266 55.3
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.3e-41 174.5 270 44.1
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.2e-41 173.7 197 65.0
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 2.8e-41 173.3 148 68.9
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 1.6e-39 167.5 268 44.4
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 4.5e-39 166.0 249 45.0
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 5.0e-38 162.5 191 67.5
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 8.6e-38 161.8 109 66.1
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 1.2e-36 157.9 152 69.1
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 8.0e-36 155.2 266 41.7
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 3.0e-35 153.3 153 51.6
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 6.8e-35 152.1 109 66.1
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 6.3e-33 145.6 191 61.8
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 1.8e-32 144.1 290 35.9
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 4.1e-32 142.9 141 50.4
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 2.0e-31 140.6 274 38.7
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.0e-30 138.3 173 52.6
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.0e-30 138.3 173 52.6
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 2.3e-30 137.1 254 36.2
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 5.0e-30 136.0 172 50.0
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 5.0e-30 136.0 269 37.9
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 4.3e-29 132.9 250 40.4
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 2.0e-26 124.0 225 40.9
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.6e-26 123.6 110 58.2
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.7e-23 113.6 97 61.9
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.8e-20 103.6 123 56.9
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 3.6e-20 103.2 200 39.0
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 3.6e-20 103.2 215 34.4
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 5.2e-19 99.4 68 70.6
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.4e-18 96.3 75 64.0
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 7.0e-16 89.0 70 70.0
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 3.9e-14 83.2 253 30.0
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 2.5e-13 80.5 58 74.1
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.3e-13 80.1 169 43.2
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.3e-13 80.1 91 59.3
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 9.5e-13 78.6 98 54.1
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 2.8e-12 77.0 48 75.0
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 1.1e-11 75.1 266 29.3
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 5.8e-10 69.3 67 62.7
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.3e-09 68.2 113 45.1
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 1.4e-08 64.7 60 53.3


User provided reference genes

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