Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 7.7e-213 743.8 449 100.0
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 3.3e-163 578.9 451 67.4
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 5.2e-161 571.6 445 67.4
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 3.9e-140 502.3 440 62.0
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 1.5e-131 473.8 396 59.1
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 3.3e-131 472.6 391 60.1
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 1.8e-129 466.8 419 55.6
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 5.3e-129 465.3 391 58.8
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 2.9e-127 459.5 391 60.4
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 4.9e-127 458.8 392 58.4
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 1.4e-126 457.2 437 54.5
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 5.5e-126 455.3 389 58.9
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 7.1e-126 454.9 422 55.2
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 2.7e-125 453.0 397 58.2
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 1.3e-124 450.7 398 56.3
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 3.0e-124 449.5 394 57.6
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 3.0e-124 449.5 384 58.1
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 3.0e-124 449.5 404 56.4
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 5.1e-124 448.7 415 57.1
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 6.7e-124 448.4 437 54.5
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 1.1e-123 447.6 402 57.5
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 7.4e-123 444.9 397 55.9
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 7.4e-123 444.9 445 53.9
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.6e-122 443.7 396 56.3
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 2.8e-122 443.0 398 56.5
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 3.7e-122 442.6 423 54.1
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 6.2e-122 441.8 398 55.5
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 8.2e-122 441.4 444 52.5
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.1e-121 441.0 443 51.9
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.4e-121 440.7 401 55.4
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.4e-121 440.7 394 56.9
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 3.1e-121 439.5 385 57.9
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 6.9e-121 438.3 431 54.5
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 9.0e-121 438.0 392 57.1
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 9.0e-121 438.0 392 56.6
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 1.2e-120 437.6 383 57.7
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 1.5e-120 437.2 436 52.5
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 1.5e-120 437.2 398 55.5
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 4.5e-120 435.6 427 54.1
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.5e-120 435.6 379 57.5
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 5.8e-120 435.3 424 53.5
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 3.8e-119 432.6 409 52.8
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 6.5e-119 431.8 391 54.7
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 6.5e-119 431.8 401 55.4
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.9e-118 430.3 401 55.4
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 7.1e-118 428.3 393 54.2
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 2.1e-117 426.8 394 53.8
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.7e-117 426.4 428 52.1
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 6.0e-117 425.2 395 53.7
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 1.0e-116 424.5 392 55.1
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 5.1e-116 422.2 396 54.3
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 5.7e-115 418.7 393 53.4
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 5.7e-115 418.7 385 55.3
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 9.7e-115 417.9 398 52.8
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 9.7e-115 417.9 394 55.1
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 2.8e-114 416.4 401 53.1
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 6.3e-114 415.2 389 54.0
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 1.1e-113 414.5 397 52.9
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 1.1e-113 414.5 389 53.7
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 1.1e-113 414.5 389 53.7
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 1.8e-113 413.7 380 55.5
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 5.3e-113 412.1 405 53.6
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 5.3e-113 412.1 389 53.5
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 9.0e-113 411.4 380 54.7
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 4.5e-112 409.1 396 52.3
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 7.7e-112 408.3 392 53.6
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 1.7e-111 407.1 391 53.5
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 3.8e-111 406.0 393 52.9
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 3.8e-111 406.0 398 52.8
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 5.0e-111 405.6 258 70.5
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 1.1e-110 404.4 380 53.7
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 7.2e-110 401.7 399 52.6
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 4.6e-109 399.1 258 69.4
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 1.4e-108 397.5 410 50.5
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 2.3e-108 396.7 393 52.2
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 7.4e-107 391.7 371 54.4
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 9.7e-107 391.3 400 51.8
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 2.8e-106 389.8 451 49.2
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 3.7e-106 389.4 451 49.2
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 4.8e-106 389.0 402 50.5
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 4.1e-105 386.0 245 69.8
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 4.1e-105 386.0 455 48.1
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 9.1e-105 384.8 394 51.0
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 2.0e-104 383.6 388 52.1
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.4e-104 382.9 394 51.3
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 5.9e-104 382.1 385 51.4
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 1.3e-103 380.9 416 50.5
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 2.5e-102 376.7 357 54.6
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 7.2e-102 375.2 396 50.0
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 9.4e-102 374.8 393 51.7
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 2.1e-101 373.6 382 50.5
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 3.6e-101 372.9 239 70.3
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 3.0e-100 369.8 258 65.1
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 1.3e-98 364.4 638 38.1
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 1.1e-97 361.3 258 64.0
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 1.4e-97 360.9 258 63.2
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 4.1e-97 359.4 261 65.9
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 4.1e-97 359.4 394 50.5
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 7.0e-97 358.6 258 62.4
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 2.6e-96 356.7 398 48.7
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.7e-95 354.0 387 49.6
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 2.9e-95 353.2 378 49.7
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 5.0e-95 352.4 333 53.8
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 5.0e-95 352.4 333 53.8
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 1.9e-94 350.5 402 48.5
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 2.7e-93 346.7 327 52.9
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 4.7e-93 345.9 355 49.0
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 3.9e-92 342.8 355 51.3
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 8.2e-90 335.1 343 50.4
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 4.1e-89 332.8 245 62.4
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 2.6e-88 330.1 332 51.5
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 1.6e-85 320.9 390 45.1
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 3.6e-85 319.7 197 75.1
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 6.1e-85 318.9 205 73.2
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 1.7e-82 310.8 411 44.0
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 2.2e-82 310.5 356 48.9
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 1.6e-80 304.3 359 47.1
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 1.0e-79 301.6 260 54.6
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 3.2e-78 296.6 261 52.1
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 8.0e-77 292.0 429 41.5
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 3.4e-75 286.6 176 73.9
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 4.8e-74 282.7 323 45.5
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 3.3e-70 270.0 260 48.5
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 2.7e-64 250.4 245 49.8
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 3.5e-64 250.0 274 44.9
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 7.8e-64 248.8 305 46.6
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 3.4e-59 233.4 134 73.1
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 2.7e-56 223.8 258 45.3
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 4.6e-56 223.0 449 33.9
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 2.0e-51 207.6 256 43.0
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 3.2e-49 200.3 251 43.8
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 3.5e-48 196.8 132 66.7
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 1.1e-46 191.8 160 56.9
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 6.8e-44 182.6 208 48.1
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 1.2e-43 181.8 208 48.1
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 4.4e-43 179.9 288 35.1
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 4.1e-41 173.3 264 39.0
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 8.6e-39 165.6 278 37.4
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.5e-38 164.9 129 62.0
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 7.8e-32 142.5 286 35.0
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 7.8e-32 142.5 79 81.0
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 6.9e-28 129.4 88 60.2
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 3.1e-20 104.0 188 35.1
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 1.5e-19 101.7 232 32.3
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 1.3e-18 98.6 113 44.2
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 4.2e-17 93.6 230 32.2
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 2.5e-14 84.3 57 71.9
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 1.3e-13 82.0 50 76.0
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 2.0e-11 74.7 71 52.1
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 7.1e-09 66.2 46 63.0
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.8e-07 61.6 153 30.1
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.8e-07 61.6 153 30.1
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 2.5e-06 57.8 56 46.4


User provided reference genes

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