Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 1.3e-230 802.7 429 100.0
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 1.1e-189 666.8 478 76.8
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 1.3e-188 663.3 478 76.6
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 3.1e-187 658.7 478 76.4
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 3.2e-184 648.7 478 74.1
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 1.4e-155 553.5 477 62.7
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 5.3e-155 551.6 478 61.1
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 2.0e-154 549.7 475 61.3
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 3.5e-154 548.9 477 63.7
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 7.7e-154 547.7 476 62.6
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 2.2e-153 546.2 458 65.5
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 4.2e-152 542.0 477 61.0
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 3.6e-151 538.9 474 59.7
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 2.3e-150 536.2 483 60.9
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 2.3e-150 536.2 479 62.8
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 8.8e-150 534.3 465 62.6
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 1.5e-149 533.5 476 59.7
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 2.0e-149 533.1 467 62.7
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 4.4e-149 531.9 482 59.1
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 1.3e-148 530.4 476 60.3
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.3e-148 530.4 476 60.5
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.7e-148 530.0 476 59.5
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 8.3e-148 527.7 475 59.8
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 1.1e-147 527.3 446 62.8
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.1e-147 525.8 476 59.9
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 5.4e-147 525.0 476 60.5
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 1.6e-146 523.5 476 59.5
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 2.7e-146 522.7 478 60.9
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 3.5e-146 522.3 471 59.9
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 4.5e-146 521.9 476 58.2
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 7.7e-146 521.2 461 62.7
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 1.7e-145 520.0 475 60.8
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 2.3e-145 519.6 476 58.8
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 2.9e-145 519.2 457 63.5
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 7.2e-144 514.6 459 59.9
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 7.2e-144 514.6 460 59.6
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 3.6e-143 512.3 474 58.0
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 8.0e-143 511.1 455 60.7
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 1.4e-142 510.4 471 59.9
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 1.4e-142 510.4 474 57.4
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.8e-142 510.0 458 61.4
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 1.8e-142 510.0 440 63.2
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 2.3e-142 509.6 459 60.8
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 2.3e-142 509.6 455 59.3
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 2.3e-142 509.6 455 58.7
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 3.0e-142 509.2 462 61.9
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.0e-142 509.2 525 54.7
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 6.8e-142 508.1 460 58.7
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.2e-141 507.3 471 58.6
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 4.4e-141 505.4 459 61.2
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 2.2e-140 503.1 458 61.6
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 3.7e-140 502.3 465 59.6
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 4.9e-140 501.9 479 59.5
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 6.3e-140 501.5 459 61.4
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 2.4e-139 499.6 462 57.1
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 3.1e-139 499.2 462 60.4
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 4.1e-139 498.8 478 59.2
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 5.4e-139 498.4 474 58.2
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 7.0e-139 498.0 459 57.7
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 1.6e-138 496.9 455 60.7
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.6e-138 496.9 459 57.7
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 2.0e-138 496.5 482 56.4
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 2.0e-138 496.5 459 57.1
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 3.5e-138 495.7 480 60.6
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 4.5e-138 495.4 474 59.1
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 5.9e-138 495.0 427 60.9
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 1.7e-137 493.4 461 56.8
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 5.0e-137 491.9 459 60.6
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 5.0e-137 491.9 477 55.6
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.9e-136 490.0 456 59.0
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 4.3e-136 488.8 479 57.2
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 9.5e-136 487.6 452 57.5
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.2e-135 487.3 459 55.8
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.2e-135 487.3 459 60.1
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 3.6e-135 485.7 479 57.0
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 4.7e-135 485.3 473 57.7
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 8.0e-135 484.6 467 58.7
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 1.4e-134 483.8 427 60.0
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 1.7e-132 476.9 463 57.7
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 3.2e-131 472.6 460 57.2
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.7e-130 469.5 484 56.8
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 1.7e-129 466.8 486 56.4
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.7e-129 466.8 485 56.7
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 3.0e-129 466.1 454 54.8
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 5.0e-129 465.3 484 56.4
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 8.6e-129 464.5 471 55.0
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 9.5e-128 461.1 465 56.1
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 9.5e-128 461.1 484 55.4
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 3.6e-127 459.1 465 56.8
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 1.8e-126 456.8 485 55.9
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 4.0e-126 455.7 506 52.6
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 2.6e-125 453.0 471 54.8
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 3.4e-125 452.6 468 57.3
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 1.4e-123 447.2 487 55.4
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 1.4e-123 447.2 487 55.4
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 1.4e-123 447.2 487 55.4
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 4.1e-123 445.7 480 55.2
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 1.2e-122 444.1 473 53.5
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 1.2e-122 444.1 488 51.6
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 1.0e-121 441.0 458 53.5
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 1.0e-121 441.0 465 53.8
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 2.3e-121 439.9 464 52.6
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 5.1e-121 438.7 480 54.8
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 1.6e-119 433.7 462 51.7
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 1.6e-119 433.7 462 51.7
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 4.0e-118 429.1 416 56.7
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 8.9e-118 427.9 451 52.5
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.3e-116 424.1 484 52.5
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 3.7e-116 422.5 467 52.2
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 6.4e-116 421.8 459 51.2
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 9.5e-112 407.9 452 49.3
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 5.2e-110 402.1 460 48.9
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.2e-109 401.0 464 47.4
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 5.8e-109 398.7 464 52.8
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 2.2e-108 396.7 460 48.3
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 2.9e-108 396.4 411 51.6
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 1.2e-106 391.0 482 47.1
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 2.1e-106 390.2 460 52.2
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 3.5e-106 389.4 451 48.8
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 3.3e-104 382.9 473 45.9
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 1.1e-102 377.9 379 54.9
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 3.1e-102 376.3 452 48.0
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 4.4e-101 372.5 451 45.7
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 2.3e-97 360.1 452 45.4
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 3.9e-97 359.4 411 53.0
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 4.3e-96 355.9 452 45.1
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 9.6e-96 354.8 452 44.9
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 6.7e-89 332.0 265 67.2
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 6.7e-89 332.0 265 67.2
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 2.1e-87 327.0 462 43.3
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.2e-85 321.2 455 40.9
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 7.1e-83 312.0 362 48.3
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.3e-81 307.0 323 54.2
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 9.0e-78 295.0 375 46.4
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 5.0e-76 289.3 460 39.1
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 5.1e-73 279.3 233 65.7
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 1.6e-71 274.2 309 52.8
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.1e-66 257.3 454 35.9
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 6.3e-63 245.7 265 53.6
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.9e-59 234.2 172 65.1
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.0e-56 224.2 215 59.1
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 2.2e-55 220.7 278 48.2
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 6.7e-49 199.1 147 69.4
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 6.7e-49 199.1 147 69.4
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 3.3e-48 196.8 161 63.4
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 1.3e-47 194.9 146 63.0
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 3.6e-42 176.8 346 33.8
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 3.1e-38 163.7 434 28.8
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 5.0e-36 156.4 461 29.9
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 3.4e-24 117.1 107 53.3
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 4.7e-10 70.1 54 61.1
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 4.9e-07 60.1 57 57.9


User provided reference genes

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