Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 9.6e-49 196.4 94 100.0
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 9.6e-49 196.4 94 100.0
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 9.6e-49 196.4 94 100.0
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 9.6e-49 196.4 94 100.0
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 9.6e-49 196.4 94 100.0
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 9.6e-49 196.4 94 100.0
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 9.6e-49 196.4 94 100.0
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.6e-48 195.7 94 98.9
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.6e-48 195.7 94 98.9
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 2.8e-48 194.9 94 98.9
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 8.1e-48 193.4 94 98.9
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 8.1e-48 193.4 94 98.9
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 1.1e-47 193.0 94 97.9
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 1.1e-47 193.0 94 97.9
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 1.1e-47 193.0 94 97.9
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 1.1e-47 193.0 93 98.9
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.1e-47 191.4 94 96.8
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 1.5e-46 189.1 94 96.8
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 1.5e-46 189.1 94 96.8
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.5e-46 189.1 94 96.8
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 2.6e-46 188.3 94 95.7
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 2.6e-46 188.3 94 95.7
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 2.6e-46 188.3 94 95.7
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 2.6e-46 188.3 94 95.7
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 2.6e-46 188.3 94 95.7
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 2.6e-46 188.3 94 95.7
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 2.6e-46 188.3 94 96.8
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 2.6e-46 188.3 94 96.8
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 5.8e-46 187.2 94 96.8
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 5.8e-46 187.2 94 96.8
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 7.6e-46 186.8 94 96.8
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 7.6e-46 186.8 94 96.8
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 94.7
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 95.7
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 95.7
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 95.7
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 95.7
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 95.7
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 95.7
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 95.7
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 95.7
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 95.7
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 95.7
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 95.7
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 95.7
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.9e-45 184.9 94 94.7
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 95.7
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 4.9e-45 184.1 94 94.7
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 8.4e-45 183.3 94 93.6
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.1e-44 180.3 94 93.6
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.1e-44 180.3 94 92.6
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 9.3e-44 179.9 94 92.6
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 9.3e-44 179.9 94 92.6
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 9.3e-44 179.9 94 92.6
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 9.3e-44 179.9 94 92.6
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.7e-43 178.3 94 90.4
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 91.5
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.6e-43 177.6 92 90.2
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 6.0e-43 177.2 94 91.5
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.7e-42 175.6 94 90.4
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.5e-41 172.6 94 91.5
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.6e-41 170.6 94 87.2
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.6e-41 170.6 94 88.3
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 7.3e-41 170.2 82 97.6
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 88.3
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 2.1e-40 168.7 81 98.8
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 6.2e-40 167.2 94 88.3
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 1.1e-39 166.4 94 86.2
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-39 166.0 83 95.2
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 9.0e-39 163.3 81 96.3
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 9.0e-39 163.3 82 95.1
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 1.2e-38 162.9 94 87.2
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 1.5e-38 162.5 84 90.5
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 2.6e-38 161.8 83 92.8
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 4.5e-38 161.0 94 85.1
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 5.8e-38 160.6 82 89.0
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.9e-37 158.3 81 93.8
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 3.8e-37 157.9 84 88.1
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 6.4e-37 157.1 94 85.1
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 2.4e-36 155.2 77 94.8
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 3.2e-36 154.8 79 91.1
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 5.4e-36 154.1 94 79.8
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 6.7e-34 147.1 74 94.6
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.1e-33 146.4 79 86.1
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 1.5e-33 146.0 79 87.3
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 4.3e-33 144.4 79 87.3
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 7.4e-33 143.7 72 94.4
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 9.6e-33 143.3 72 93.1
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.8e-32 141.7 82 84.1
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 3.7e-32 141.4 94 78.7
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.0e-31 137.9 74 87.8
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 9.0e-31 136.7 94 73.4
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 1.2e-30 136.3 69 94.2
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 1.2e-30 136.3 69 94.2
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 3.4e-30 134.8 86 74.4
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 6.4e-29 130.6 63 98.4
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 4.2e-28 127.9 66 93.9
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 9.3e-28 126.7 73 84.9
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 9.3e-28 126.7 75 82.7
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 9.3e-28 126.7 75 82.7
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 9.3e-28 126.7 75 82.7
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 3.5e-27 124.8 67 91.0
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 8.7e-26 120.2 63 90.5
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.3e-24 116.3 61 90.2
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 2.1e-24 115.5 83 71.1
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 1.1e-23 113.2 75 70.7
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 1.1e-23 113.2 53 98.1
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.4e-23 112.1 59 91.5
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 2.6e-22 108.6 62 85.5
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 3.8e-21 104.8 59 84.7
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 6.5e-21 104.0 62 85.5
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 1.6e-19 99.4 82 67.1
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 4.6e-19 97.8 52 86.5
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.6e-19 97.8 49 93.9
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 6.0e-19 97.4 56 83.9
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 6.0e-19 97.4 44 100.0
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 1.8e-18 95.9 50 88.0
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 3.0e-18 95.1 44 97.7
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 6.7e-18 94.0 77 66.2
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 6.7e-18 94.0 61 77.0
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 8.7e-18 93.6 44 100.0
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 5.7e-17 90.9 43 95.3
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 1.3e-16 89.7 70 67.1
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.3e-16 87.4 46 87.0
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 3.1e-15 85.1 41 97.6
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.6e-14 82.0 37 97.3
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 2.6e-14 82.0 84 53.6
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 2.5e-12 75.5 41 87.8
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 3.2e-12 75.1 37 94.6
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 3.2e-12 75.1 44 81.8
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 2.7e-11 72.0 35 97.1
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 1.8e-10 69.3 32 96.9
SMO086G0037 Selaginella moellendorffii HOM05D000540 ORTHO05D008899 1.1e-09 66.6 89 42.7
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.5e-09 65.5 30 96.7
Cc06_g21660 Coffea canephora HOM05D000540 ORTHO05D008899 5.3e-07 57.8 40 60.0


User provided reference genes

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