Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 4.0e-204 714.5 360 100.0
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 2.7e-120 436.0 434 58.3
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 1.8e-119 433.3 291 75.6
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 1.1e-116 424.1 427 57.8
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 3.6e-112 409.1 399 59.1
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 3.3e-105 386.0 282 70.6
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 5.6e-105 385.2 272 73.9
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 7.3e-105 384.8 282 70.9
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 7.3e-105 384.8 282 70.2
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 1.6e-104 383.6 280 70.4
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 1.4e-103 380.6 280 71.4
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 5.2e-103 378.6 273 72.2
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 5.2e-103 378.6 273 72.2
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 8.9e-103 377.9 295 67.8
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 2.6e-102 376.3 288 68.1
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 2.6e-102 376.3 273 71.8
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 5.8e-102 375.2 256 74.2
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 7.5e-102 374.8 285 68.4
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 7.5e-102 374.8 334 61.4
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 1.7e-101 373.6 251 74.9
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 2.2e-101 373.2 254 74.4
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 2.2e-101 373.2 254 73.6
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 4.9e-101 372.1 260 71.5
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 6.4e-101 371.7 286 68.9
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 1.4e-100 370.5 257 73.5
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 1.4e-100 370.5 292 66.1
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.4e-100 370.5 293 65.9
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.4e-100 370.5 292 66.1
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 1.4e-100 370.5 250 73.6
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 1.9e-100 370.2 270 70.0
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 3.2e-100 369.4 292 67.5
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 4.1e-100 369.0 273 68.1
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 4.1e-100 369.0 292 65.8
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 4.1e-100 369.0 292 65.8
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 5.4e-100 368.6 256 73.0
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 7.0e-100 368.2 295 66.4
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 9.2e-100 367.9 256 73.4
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 1.2e-99 367.5 280 69.3
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 1.6e-99 367.1 273 70.0
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 1.6e-99 367.1 252 73.0
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 4.6e-99 365.5 250 74.8
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 4.6e-99 365.5 279 68.5
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.0e-98 364.4 271 67.5
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 3.0e-98 362.8 280 68.2
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 3.9e-98 362.5 260 70.4
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 6.6e-98 361.7 262 69.8
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 1.1e-97 360.9 253 71.5
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 1.1e-97 360.9 284 67.3
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 1.5e-97 360.5 253 71.1
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 3.3e-97 359.4 256 71.9
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 3.3e-97 359.4 280 66.8
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 7.3e-97 358.2 287 66.2
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 7.3e-97 358.2 279 68.1
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 9.5e-97 357.8 287 66.2
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 3.6e-96 355.9 276 66.3
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 3.6e-96 355.9 270 68.1
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 4.7e-96 355.5 284 65.8
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 6.2e-96 355.1 279 67.7
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 1.1e-95 354.4 284 66.5
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 3.1e-95 352.8 260 70.4
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 1.2e-94 350.9 236 74.6
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 3.4e-94 349.4 255 69.8
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 3.4e-94 349.4 252 70.6
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 5.8e-94 348.6 254 71.3
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 7.5e-94 348.2 254 68.9
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 3.7e-93 345.9 260 67.3
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 6.4e-93 345.1 320 56.9
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 8.3e-93 344.7 274 65.7
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 1.1e-92 344.4 209 80.4
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 3.2e-92 342.8 255 68.6
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 5.4e-92 342.0 264 67.4
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 5.4e-92 342.0 265 65.3
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 5.4e-92 342.0 242 71.5
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 9.2e-92 341.3 267 66.3
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 1.6e-91 340.5 267 66.7
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 1.6e-91 340.5 248 69.8
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 6.0e-91 338.6 255 68.6
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 6.0e-91 338.6 274 65.0
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 1.3e-90 337.4 263 64.6
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 1.3e-90 337.4 271 64.9
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 1.7e-90 337.0 261 66.7
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 1.7e-90 337.0 255 66.7
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 2.3e-90 336.7 263 64.6
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 3.9e-90 335.9 266 64.3
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 6.6e-90 335.1 266 64.3
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 6.6e-90 335.1 211 77.3
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 8.6e-90 334.7 263 65.8
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 1.5e-89 334.0 280 62.5
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 1.9e-89 333.6 266 63.9
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 2.5e-89 333.2 287 62.0
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 3.3e-89 332.8 265 63.8
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 5.6e-89 332.0 265 64.2
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 5.6e-89 332.0 265 64.2
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 7.3e-89 331.6 254 68.5
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 9.5e-89 331.3 224 72.3
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 1.2e-88 330.9 265 64.5
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 1.2e-88 330.9 265 64.5
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 3.6e-88 329.3 255 65.5
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 1.2e-86 324.3 267 62.5
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 9.2e-84 314.7 244 66.0
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 2.7e-83 313.2 208 73.6
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 1.0e-82 311.2 257 63.0
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 1.3e-82 310.8 301 58.8
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 5.2e-79 298.9 359 51.8
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 1.4e-76 290.8 251 58.6
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 2.7e-75 286.6 263 59.7
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 1.7e-74 283.9 251 62.2
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 5.1e-74 282.3 204 71.1
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 5.6e-73 278.9 260 59.2
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 2.1e-67 260.4 206 63.6
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 2.3e-66 256.9 208 65.4
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 5.1e-66 255.8 231 58.0
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 1.3e-64 251.1 187 67.4
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 1.4e-63 247.7 288 48.3
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 5.5e-60 235.7 204 61.8
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 1.6e-59 234.2 178 66.9
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 1.3e-58 231.1 245 50.6
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 6.7e-58 228.8 266 47.4
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 1.5e-57 227.6 204 59.3
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 3.3e-57 226.5 199 55.3
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.4e-52 211.1 173 64.7
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 1.7e-45 187.6 168 56.0
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 1.1e-44 184.9 284 43.3
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 1.6e-40 171.0 195 47.2
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 3.0e-34 150.2 221 37.6
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 5.7e-33 146.0 181 48.6
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.4e-28 131.3 84 78.6
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 2.7e-27 127.1 80 80.0
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 1.8e-23 114.4 168 39.3
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 4.5e-22 109.8 270 28.5
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 2.9e-21 107.1 54 90.7
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 8.5e-21 105.5 59 83.1
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 2.0e-17 94.4 52 80.8
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 7.5e-09 65.9 176 29.0
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.7e-08 64.7 170 28.8
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 3.1e-07 60.5 179 26.8
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 7.0e-07 59.3 189 26.5
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 1.2e-06 58.5 173 26.6
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.6e-06 58.2 147 25.9
FvH4_5g19731 Fragaria vesca HOM05D005750 ORTHO05D035649 1.6e-06 58.2 56 58.9
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 2.0e-06 57.8 187 26.2
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 2.7e-06 57.4 154 27.9
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 2.7e-06 57.4 179 26.8
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 2.7e-06 57.4 174 27.0
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 3.5e-06 57.0 175 26.3
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 3.5e-06 57.0 175 26.3
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 3.5e-06 57.0 179 26.8
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 3.5e-06 57.0 155 28.4
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 4.5e-06 56.6 178 26.4
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 4.5e-06 56.6 183 26.2
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 4.5e-06 56.6 174 27.6
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 4.5e-06 56.6 176 26.7
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 4.5e-06 56.6 183 26.2
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 5.9e-06 56.2 172 25.0
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 7.7e-06 55.8 155 27.1
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 7.7e-06 55.8 171 26.9
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 7.7e-06 55.8 180 26.7


User provided reference genes

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