Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 1.2e-203 713.0 366 100.0
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 1.4e-172 609.8 368 85.6
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 2.4e-172 609.0 368 86.1
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 5.2e-151 538.1 366 78.7
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 7.3e-137 491.1 361 70.9
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 1.4e-135 486.9 370 68.9
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 2.4e-135 486.1 363 70.5
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 5.2e-135 485.0 374 68.7
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 2.6e-134 482.6 363 70.2
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 1.7e-133 479.9 369 69.6
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 1.4e-132 476.9 363 69.1
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 1.9e-132 476.5 366 70.8
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 3.5e-131 472.2 362 69.3
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 7.8e-131 471.1 362 68.2
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 2.3e-130 469.5 363 70.5
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 1.1e-129 467.2 353 69.4
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 1.3e-128 463.8 324 75.0
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 2.8e-128 462.6 366 68.6
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 6.2e-128 461.5 314 74.5
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 8.1e-128 461.1 353 68.8
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 2.6e-126 456.1 354 69.2
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 1.3e-125 453.8 367 67.8
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 3.8e-125 452.2 351 68.7
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 1.9e-124 449.9 366 67.2
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 9.3e-124 447.6 366 66.1
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 6.0e-123 444.9 352 66.2
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 1.3e-122 443.7 315 72.1
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 3.9e-122 442.2 354 66.4
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 6.6e-122 441.4 351 68.1
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 8.7e-122 441.0 312 72.1
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 1.1e-121 440.7 353 68.0
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 1.9e-121 439.9 355 66.2
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 3.3e-121 439.1 363 63.9
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 3.3e-121 439.1 361 65.9
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 4.3e-121 438.7 344 66.3
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 4.3e-121 438.7 344 66.3
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 5.6e-121 438.3 347 67.1
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 7.4e-121 438.0 313 70.6
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 7.4e-121 438.0 344 66.3
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 1.6e-120 436.8 368 63.0
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 1.6e-120 436.8 323 69.7
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 2.8e-120 436.0 335 68.1
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 2.8e-120 436.0 363 63.9
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 4.8e-120 435.3 361 64.3
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 4.8e-120 435.3 341 65.1
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 4.8e-120 435.3 290 76.2
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 6.2e-120 434.9 341 65.1
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 6.2e-120 434.9 343 67.9
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 6.2e-120 434.9 288 75.7
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 1.1e-119 434.1 369 64.0
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 1.8e-119 433.3 371 65.0
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 1.8e-119 433.3 306 71.9
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 2.4e-119 433.0 360 66.9
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 3.1e-119 432.6 361 64.3
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 4.0e-119 432.2 297 74.4
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 6.9e-119 431.4 325 67.7
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 9.0e-119 431.0 297 73.1
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 9.0e-119 431.0 369 64.5
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.2e-118 430.6 386 63.0
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 1.2e-118 430.6 303 73.3
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 1.2e-118 430.6 322 67.7
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 3.4e-118 429.1 339 64.9
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 4.5e-118 428.7 348 65.5
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 5.8e-118 428.3 341 65.4
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 7.6e-118 427.9 325 66.8
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 1.7e-117 426.8 317 67.8
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 2.9e-117 426.0 329 67.2
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 2.9e-117 426.0 318 70.1
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 6.4e-117 424.9 316 69.0
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 6.4e-117 424.9 402 60.2
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 6.4e-117 424.9 294 72.8
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 2.4e-116 422.9 398 58.5
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 2.4e-116 422.9 311 70.7
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 9.3e-116 421.0 279 77.1
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 6.0e-115 418.3 337 65.9
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 3.7e-112 409.1 265 78.9
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 1.1e-111 407.5 266 75.6
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 1.7e-109 400.2 326 63.2
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 2.5e-108 396.4 366 60.9
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 4.2e-108 395.6 301 69.1
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 3.5e-107 392.5 300 67.0
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 4.6e-107 392.1 297 68.0
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 1.1e-105 387.5 359 60.2
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 3.3e-105 386.0 421 55.1
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 9.6e-105 384.4 319 62.4
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 4.1e-103 379.0 505 45.7
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 6.5e-101 371.7 543 43.6
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 1.6e-99 367.1 525 43.4
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 1.1e-97 360.9 275 69.5
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 3.7e-96 355.9 265 66.4
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 6.3e-96 355.1 282 67.4
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 1.2e-91 340.9 228 77.2
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 1.6e-91 340.5 234 71.8
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 3.3e-89 332.8 287 61.0
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 9.7e-89 331.3 228 73.7
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 2.2e-88 330.1 278 60.1
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 6.3e-88 328.6 276 65.6
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 4.7e-83 312.4 280 56.8
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 1.8e-82 310.5 284 56.0
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 2.3e-82 310.1 403 49.9
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 6.3e-80 302.0 184 80.4
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 2.4e-79 300.1 299 52.5
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 3.6e-59 233.0 209 64.1
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 1.8e-58 230.7 194 59.8
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 3.4e-57 226.5 142 76.8
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 4.4e-57 226.1 309 41.7
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 6.3e-56 222.2 356 43.3
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 1.4e-55 221.1 197 61.4
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 2.9e-53 213.4 170 62.9
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 2.4e-47 193.7 299 40.5
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 4.1e-47 193.0 193 49.7
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 1.7e-45 187.6 200 52.0
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 1.5e-33 147.9 216 43.1
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 5.1e-29 132.9 169 45.0
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 1.1e-28 131.7 99 70.7
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 8.9e-26 122.1 105 58.1
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.5e-25 121.3 77 76.6
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 3.4e-25 120.2 75 77.3
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 5.6e-20 102.8 92 57.6
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.8e-19 100.5 154 46.8
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 9.9e-17 92.0 77 57.1
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 1.1e-15 88.6 54 77.8
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 2.3e-13 80.9 150 31.3
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 2.3e-13 80.9 105 49.5
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 3.9e-13 80.1 55 67.3
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.3e-10 69.7 57 68.4
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.3e-10 69.7 57 68.4
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.3e-10 69.7 57 68.4
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.3e-10 69.7 57 68.4
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.3e-10 69.7 57 68.4
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 6.9e-10 69.3 57 68.4
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 6.9e-10 69.3 57 68.4
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 9.0e-10 68.9 57 68.4
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 5.4e-07 59.7 34 79.4


User provided reference genes

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