Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025824 Sechium edule HOM05D000916 ORTHO05D009274 9.5e-95 350.1 172 100.0
ClCG10G012070 Citrullus lanatus HOM05D000916 ORTHO05D009274 1.3e-72 276.6 173 79.8
CsaV3_3G031830 Cucumis sativus L. HOM05D000916 ORTHO05D009274 1.7e-72 276.2 173 79.8
MELO3C024009.2 Cucumis melo HOM05D000916 ORTHO05D009274 1.9e-71 272.7 173 78.6
COL.COLO4_12325 Corchorus olitorius HOM05D000916 ORTHO05D003833 7.1e-50 201.1 169 60.9
TAR636G3509 Trochodendron aralioides HOM05D000916 ORTHO05D009274 9.6e-47 190.7 170 57.6
RcHm_v2.0_Chr1g0318771 Rosa chinensis HOM05D000916 ORTHO05D009274 2.1e-46 189.5 178 57.3
Psat0s488g0040 Pisum sativum HOM05D000916 ORTHO05D009274 4.8e-46 188.3 172 55.2
Prupe.2G025000 Prunus persica HOM05D000916 ORTHO05D009274 4.8e-46 188.3 176 59.1
Medtr0003s0480 Medicago truncatula HOM05D000916 ORTHO05D009274 8.1e-46 187.6 177 56.5
TWI53G0499 Tripterygium wilfordii HOM05D000916 ORTHO05D009274 8.1e-46 187.6 175 57.1
Dinv07424 Davidia involucrata HOM05D000916 ORTHO05D009274 1.1e-45 187.2 174 57.5
Nn2g15166 Nelumbo nucifera HOM05D000916 ORTHO05D009274 1.1e-45 187.2 174 56.9
arahy.Tifrunner.gnm1.ann1.W0KZJE Arachis hypogaea HOM05D000916 ORTHO05D009274 1.8e-45 186.4 170 57.6
TAR636G0367 Trochodendron aralioides HOM05D000916 ORTHO05D009274 2.4e-45 186.0 162 54.9
Manes.07G012200 Manihot esculenta HOM05D000916 ORTHO05D009274 4.0e-45 185.3 179 57.5
FvH4_7g01930 Fragaria vesca HOM05D000916 ORTHO05D009274 3.4e-44 182.2 179 53.1
FAN06G1234 Fragaria x ananassa HOM05D000916 ORTHO05D009274 3.4e-44 182.2 179 53.1
Lj3g0014758 Lotus japonicus HOM05D000916 ORTHO05D009274 3.4e-44 182.2 170 55.9
PGR031G2328 Punica granatum HOM05D000916 ORTHO05D009274 3.4e-44 182.2 177 53.1
FAN03G1280 Fragaria x ananassa HOM05D000916 ORTHO05D009274 5.8e-44 181.4 179 53.1
CiPaw.14G004300 Carya illinoinensis HOM05D000916 ORTHO05D009274 1.3e-43 180.3 175 52.0
Gohir.D08G065100 Gossypium hirsutum HOM05D000916 ORTHO05D009274 2.2e-43 179.5 174 55.7
Gorai.004G067400 Gossypium raimondii HOM05D000916 ORTHO05D009274 8.4e-43 177.6 176 55.1
Aqoxy2G00212 Aquilegia oxysepala HOM05D000916 ORTHO05D009274 1.9e-42 176.4 170 55.9
Cpa.g.sc197.27 Carica papaya HOM05D000916 ORTHO05D009274 2.4e-42 176.0 173 55.5
VMungo1127G0561 Vigna mungo HOM05D000916 ORTHO05D009274 3.2e-42 175.6 173 54.9
Phvul.011G013300 Phaseolus vulgaris HOM05D000916 ORTHO05D009274 5.5e-42 174.9 175 54.9
Atru.chr11.2553 Acer truncatum HOM05D000916 ORTHO05D009274 9.3e-42 174.1 179 54.2
AUR62023107 Chenopodium quinoa HOM05D000916 ORTHO05D009274 3.5e-41 172.2 167 53.9
Eucgr.G03277 Eucalyptus grandis HOM05D000916 ORTHO05D009274 1.3e-40 170.2 186 48.4
Actinidia06285 Actinidia chinensis HOM05D000916 ORTHO05D009274 3.0e-40 169.1 129 62.0
CSS0046245 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D009274 4.3e-39 165.2 124 63.7
Lj9P642T24 Lonicera japonica HOM05D000916 ORTHO05D009274 4.3e-39 165.2 126 60.3
Potri.001G259216 Populus trichocarpa HOM05D000916 ORTHO05D009274 4.3e-39 165.2 177 51.4
Potri.001G259900 Populus trichocarpa HOM05D000916 ORTHO05D009274 4.3e-39 165.2 177 51.4
Lsat_1_v5_gn_7_34400 Lactuca sativa HOM05D000916 ORTHO05D009274 5.6e-39 164.9 176 52.3
Potri.001G260600 Populus trichocarpa HOM05D000916 ORTHO05D009274 5.6e-39 164.9 126 62.7
Rhsim07G0060200 Rhododendron simsii HOM05D000916 ORTHO05D009274 1.3e-38 163.7 129 58.9
Solyc01g088030.4 Solanum lycopersicum HOM05D000916 ORTHO05D009274 1.3e-38 163.7 153 54.9
DCAR_022368 Daucus carota HOM05D000916 ORTHO05D009274 2.1e-38 162.9 169 48.5
Glyma.09G226100 Glycine max HOM05D000916 ORTHO05D009274 2.1e-38 162.9 176 52.3
Peaxi162Scf01108g00212 Petunia axillaris HOM05D000916 ORTHO05D009274 2.1e-38 162.9 139 56.8
FAN03G2260 Fragaria x ananassa HOM05D000916 ORTHO05D009274 3.7e-38 162.2 167 52.7
Nitab4.5_0002888g0050 Nicotiana tabacum HOM05D000916 ORTHO05D009274 4.8e-38 161.8 144 55.6
GSVIVG01001443001 Vitis vinifera HOM05D000916 ORTHO05D009274 6.2e-38 161.4 124 60.5
Sc11g0009010 Simmondsia chinensis HOM05D000916 ORTHO05D009274 1.4e-37 160.2 154 55.2
Sopen01g034920 Solanum pennellii HOM05D000916 ORTHO05D009274 1.4e-37 160.2 153 53.6
PGSC0003DMG400006832 Solanum tuberosum HOM05D000916 ORTHO05D009274 1.8e-37 159.8 155 53.5
Cc04_g14680 Coffea canephora HOM05D000916 ORTHO05D009274 2.4e-37 159.5 197 46.7
Oeu049471.1 Olea europaea HOM05D000916 ORTHO05D009274 6.9e-37 157.9 178 48.3
PSO170G4961 Papaver somniferum HOM05D000916 ORTHO05D009274 6.9e-37 157.9 166 50.0
HanXRQChr15g0480451 Helianthus annuus HOM05D000916 ORTHO05D009274 9.0e-37 157.5 170 50.6
Ciclev10032919m.g Citrus clementina HOM05D000916 ORTHO05D009274 2.0e-36 156.4 128 58.6
CAN.G410.4 Capsicum annuum HOM05D000916 ORTHO05D009274 3.4e-36 155.6 169 50.9
THA.LOC104826696 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 3.4e-36 155.6 177 48.0
THA.LOC104826705 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 3.4e-36 155.6 177 48.0
MBI11_g21817_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D009274 7.6e-36 154.5 124 61.3
Rhsim07G0060800 Rhododendron simsii HOM05D000916 ORTHO05D009274 1.7e-35 153.3 180 47.2
EL10Ac2g04385 Beta vulgaris HOM05D000916 ORTHO05D009274 3.8e-35 152.1 165 50.3
Duzib133G0774 Durio zibethinus HOM05D000916 ORTHO05D009274 3.8e-35 152.1 169 49.7
Migut.N01806 Erythranthe guttata HOM05D000916 ORTHO05D009274 3.8e-35 152.1 158 51.3
Aa31LG9G13290 Aethionema arabicum HOM05D000916 ORTHO05D009274 1.9e-34 149.8 154 52.6
AT5G43210 Arabidopsis thaliana HOM05D000916 ORTHO05D009274 3.2e-34 149.1 173 48.6
THA.LOC104827433 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 5.5e-34 148.3 159 50.9
CANSAT80G0736 Cannabis sativa HOM05D000916 ORTHO05D009274 7.1e-34 147.9 139 61.2
PSO210G2598 Papaver somniferum HOM05D000916 ORTHO05D009274 7.1e-34 147.9 166 48.2
Sp2g08020 Schrenkiella parvula HOM05D000916 ORTHO05D009274 9.3e-34 147.5 178 47.8
TAR636G0653 Trochodendron aralioides HOM05D000916 ORTHO05D009274 9.3e-34 147.5 134 58.2
Thhalv10003279m.g Eutrema salsugineum HOM05D000916 ORTHO05D009274 2.1e-33 146.4 172 47.1
ATR0782G182 Amborella trichopoda HOM05D000916 ORTHO05D009274 7.9e-33 144.4 167 47.9
Carub.0008s0547 Capsella rubella HOM05D000916 ORTHO05D009274 1.3e-32 143.7 175 46.9
BcaB07g30592 Brassica carinata HOM05D000916 ORTHO05D009274 3.0e-32 142.5 172 47.7
MSTRG.5047 Avicennia marina HOM05D000916 ORTHO05D009274 5.1e-32 141.7 183 47.0
vmacro13705 Vaccinium macrocarpon HOM05D000916 ORTHO05D009274 8.7e-32 141.0 226 38.5
A02p27690 Brassica napus HOM05D000916 ORTHO05D009274 1.5e-31 140.2 171 47.4
BraA02t07808Z Brassica rapa HOM05D000916 ORTHO05D009274 1.5e-31 140.2 171 47.4
SGA_v2.0_scaffold5G02941 Striga asiatica HOM05D000916 ORTHO05D009274 1.5e-31 140.2 127 52.8
CDE11G0804 Ceratophyllum demersum HOM05D000916 ORTHO05D009274 1.9e-31 139.8 122 59.0
Potri.001G260300 Populus trichocarpa HOM05D000916 ORTHO05D009274 2.2e-30 136.3 103 64.1
Hma1.2p1_0579F.1_g182540 Hydrangea macrophylla HOM05D000916 ORTHO05D009274 8.2e-30 134.4 90 66.7
MD02G1299300 Malus domestica HOM05D000916 ORTHO05D009274 4.1e-29 132.1 100 60.0
AUR62009428 Chenopodium quinoa HOM05D000916 ORTHO05D009274 1.7e-27 126.7 102 58.8
Os11g0146550 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 1.7e-27 126.7 169 45.0
RcHm_v2.0_Chr1g0318641 Rosa chinensis HOM05D000916 ORTHO05D009274 2.9e-27 125.9 124 59.7
Zm00001eb405020 Zea mays HOM05D000916 ORTHO05D009274 2.9e-27 125.9 121 53.7
Gohir.A08G055800 Gossypium hirsutum HOM05D000916 ORTHO05D009274 3.8e-27 125.6 174 43.7
Sabra16G0159300 Salix brachista HOM05D000916 ORTHO05D009274 3.8e-27 125.6 100 61.0
Cfa010832 Carpinus fangiana HOM05D000916 ORTHO05D009274 4.2e-26 122.1 107 60.7
Lalb_Chr03g0024151 Lupinus albus HOM05D000916 ORTHO05D009274 1.1e-23 114.0 104 52.9
FAN01G3008 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.9e-23 113.2 114 55.3
Ah.16g100710 Amaranthus hybridus HOM05D000916 ORTHO05D009274 3.3e-23 112.5 101 51.5
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 1.3e-22 110.5 162 42.6
Haze_03122 Corylus avellana HOM05D000916 ORTHO05D009274 9.1e-21 104.4 94 59.6
AL8G17370 Arabidopsis lyrata HOM05D000916 ORTHO05D009274 1.7e-19 100.1 110 51.8
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 1.1e-18 97.4 78 56.4
AagrBONN_evm.TU.Sc2ySwM_117.2289 Anthoceros agrestis HOM05D000916 ORTHO05D009274 1.3e-14 84.0 176 35.8
Os12g0143300 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 1.7e-14 83.6 109 46.8
Nitab4.5_0006695g0040 Nicotiana tabacum HOM05D000916 ORTHO05D009274 2.2e-14 83.2 142 37.3
Atru.chr11.2549 Acer truncatum HOM05D000916 ORTHO05D009274 2.6e-12 76.3 50 66.0
RcHm_v2.0_Chr1g0318631 Rosa chinensis HOM05D000916 ORTHO05D009274 2.6e-12 76.3 80 46.2
AagrBONN_evm.TU.Sc2ySwM_117.2287 Anthoceros agrestis HOM05D000916 ORTHO05D009274 8.5e-11 71.2 124 35.5
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 2.7e-09 66.2 63 47.6
AagrBONN_evm.TU.Sc2ySwM_369.511 Anthoceros agrestis HOM05D002376 ORTHO05D004654 5.2e-08 62.0 69 43.5
PRCOL_00000864 Prasinoderma coloniale HOM05D002376 ORTHO05D004654 6.7e-08 61.6 78 41.0
PRCOL_00003986 Prasinoderma coloniale HOM05D000916 ORTHO05D009274 6.7e-08 61.6 78 43.6
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 6.7e-08 61.6 72 41.7
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 8.8e-08 61.2 82 36.6
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 1.1e-07 60.8 87 37.9
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 1.5e-07 60.5 88 35.2
Cfa023829 Carpinus fangiana HOM05D002376 ORTHO05D004654 3.3e-07 59.3 73 45.2
CDE04G2750 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 3.3e-07 59.3 76 39.5
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 3.3e-07 59.3 108 36.1
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 5.7e-07 58.5 79 36.7
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 7.4e-07 58.2 96 39.6
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 7.4e-07 58.2 79 38.0
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 1.3e-06 57.4 79 36.7
Ciclev10001469m.g Citrus clementina HOM05D002376 ORTHO05D004654 1.7e-06 57.0 91 35.2
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 1.7e-06 57.0 79 35.4
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.2e-06 56.6 82 36.6
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.2e-06 56.6 82 36.6
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 2.2e-06 56.6 82 36.6
Prupe.6G045800 Prunus persica HOM05D002376 ORTHO05D004654 2.2e-06 56.6 96 34.4
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 2.2e-06 56.6 69 42.0
TWI79G1034 Tripterygium wilfordii HOM05D002376 ORTHO05D004654 2.2e-06 56.6 109 32.1
Aqoxy2G00731 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 2.8e-06 56.2 82 35.4
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 2.8e-06 56.2 79 36.7
AUR62009726 Chenopodium quinoa HOM05D002376 ORTHO05D004654 2.8e-06 56.2 69 40.6
Haze_24447 Corylus avellana HOM05D002376 ORTHO05D004654 2.8e-06 56.2 79 36.7
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 2.8e-06 56.2 79 35.4
Oeu011367.1 Olea europaea HOM05D002376 ORTHO05D004654 2.8e-06 56.2 69 42.0
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 2.8e-06 56.2 66 37.9
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 2.8e-06 56.2 69 39.1
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 3.7e-06 55.8 77 39.0
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 3.7e-06 55.8 69 40.6
MSTRG.12701 Avicennia marina HOM05D002376 ORTHO05D004654 3.7e-06 55.8 77 37.7
CAN.G473.25 Capsicum annuum HOM05D002376 ORTHO05D004654 3.7e-06 55.8 69 40.6
Ca_15029_v3 Cicer arietinum L. HOM05D002376 ORTHO05D004654 3.7e-06 55.8 69 42.0
Psat5g150440 Pisum sativum HOM05D002376 ORTHO05D004654 3.7e-06 55.8 69 40.6
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 3.7e-06 55.8 57 42.1
arahy.Tifrunner.gnm1.ann1.WIJ2N1 Arachis hypogaea HOM05D002376 ORTHO05D004654 4.8e-06 55.5 78 38.5
A04p23110 Brassica napus HOM05D002376 ORTHO05D004654 4.8e-06 55.5 75 37.3
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 4.8e-06 55.5 72 37.5
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 4.8e-06 55.5 72 37.5
FvH4_3g40230 Fragaria vesca HOM05D002376 ORTHO05D004654 4.8e-06 55.5 91 34.1
FAN11G3581 Fragaria x ananassa HOM05D002376 ORTHO05D004654 4.8e-06 55.5 91 34.1
FAN16G2868 Fragaria x ananassa HOM05D002376 ORTHO05D004654 4.8e-06 55.5 91 34.1
RcHm_v2.0_Chr5g0072441 Rosa chinensis HOM05D002376 ORTHO05D004654 4.8e-06 55.5 91 34.1
SGA_v2.0_scaffold6G03299 Striga asiatica HOM05D002376 ORTHO05D004654 4.8e-06 55.5 79 36.7
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 6.3e-06 55.1 69 39.1
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 6.3e-06 55.1 72 37.5
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 6.3e-06 55.1 72 37.5
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 6.3e-06 55.1 79 36.7
FAN21G3096 Fragaria x ananassa HOM05D002376 ORTHO05D004654 6.3e-06 55.1 91 34.1
FAN25G0776 Fragaria x ananassa HOM05D002376 ORTHO05D004654 6.3e-06 55.1 91 34.1
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 6.3e-06 55.1 101 34.7
THA.LOC104826270 Tarenaya hassleriana HOM05D002376 ORTHO05D004654 6.3e-06 55.1 75 37.3
Actinidia11613 Actinidia chinensis HOM05D000055 ORTHO05D000057 8.2e-06 54.7 63 38.1
CARHR123670 Cardamine hirsuta HOM05D002376 ORTHO05D004654 8.2e-06 54.7 69 40.6
ClCG03G000240 Citrullus lanatus HOM05D002376 ORTHO05D004654 8.2e-06 54.7 69 40.6
MELO3C020503.2 Cucumis melo HOM05D002376 ORTHO05D004654 8.2e-06 54.7 76 36.8
Gohir.A13G235800 Gossypium hirsutum HOM05D002376 ORTHO05D004654 8.2e-06 54.7 125 28.8
MD02G1299100 Malus domestica HOM05D000916 ORTHO05D009274 8.2e-06 54.7 38 68.4
Manes.18G137600 Manihot esculenta HOM05D002376 ORTHO05D004654 8.2e-06 54.7 82 34.1
Mapoly0004s0007 Marchantia polymorpha HOM05D002376 ORTHO05D004654 8.2e-06 54.7 84 33.3
PSO339G0904 Papaver somniferum HOM05D002376 ORTHO05D004654 8.2e-06 54.7 75 38.7
Sp4g12910 Schrenkiella parvula HOM05D002376 ORTHO05D004654 8.2e-06 54.7 78 37.2
Sc12g0000140 Simmondsia chinensis HOM05D002376 ORTHO05D004654 8.2e-06 54.7 81 34.6
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 8.2e-06 54.7 76 36.8


User provided reference genes

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