Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 7.7e-71 270.4 139 100.0
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 3.0e-67 258.5 139 94.2
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 3.1e-64 248.4 139 91.4
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 7.7e-63 243.8 139 89.9
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 5.2e-59 231.1 140 85.0
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 1.5e-58 229.6 140 83.6
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 2.0e-58 229.2 140 83.6
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 3.4e-58 228.4 140 82.9
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 7.5e-58 227.3 140 82.9
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 9.8e-58 226.9 140 82.9
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.7e-57 226.1 141 85.8
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.7e-57 226.1 141 85.8
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 3.7e-57 224.9 140 83.6
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 3.7e-57 224.9 140 84.3
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 6.3e-57 224.2 140 83.6
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 1.4e-56 223.0 140 82.9
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.8e-56 222.6 140 80.7
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.4e-56 222.2 141 84.4
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 4.1e-56 221.5 140 82.9
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 4.1e-56 221.5 139 84.9
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 5.4e-56 221.1 136 85.3
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 1.2e-55 219.9 140 81.4
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 1.6e-55 219.5 141 83.0
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.6e-55 219.5 140 80.0
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 2.0e-55 219.2 140 81.4
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.0e-55 219.2 140 81.4
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 2.7e-55 218.8 140 80.0
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 4.5e-55 218.0 142 81.7
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 4.5e-55 218.0 140 80.0
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 4.5e-55 218.0 141 85.1
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 7.7e-55 217.2 140 80.0
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 7.7e-55 217.2 140 81.4
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 1.3e-54 216.5 139 80.6
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.9e-54 215.3 140 80.0
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.0e-54 214.5 138 81.2
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 6.6e-54 214.2 140 79.3
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.5e-53 213.0 136 81.6
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.9e-53 212.6 140 79.3
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 2.5e-53 212.2 142 79.6
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 3.3e-53 211.8 142 80.3
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.3e-53 211.8 138 81.9
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 4.3e-53 211.5 141 81.6
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 4.3e-53 211.5 141 82.3
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 4.3e-53 211.5 141 80.1
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 4.3e-53 211.5 140 80.7
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 5.6e-53 211.1 140 80.7
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 7.2e-53 210.7 140 78.6
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 7.2e-53 210.7 140 79.3
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 9.5e-53 210.3 140 78.6
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 9.5e-53 210.3 140 78.6
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 9.5e-53 210.3 140 75.0
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.6e-52 209.5 141 79.4
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.6e-52 209.5 140 77.9
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 2.8e-52 208.8 142 79.6
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 2.8e-52 208.8 142 79.6
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 2.8e-52 208.8 137 78.1
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 2.8e-52 208.8 138 80.4
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 3.6e-52 208.4 142 79.6
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 3.6e-52 208.4 141 76.6
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 4.7e-52 208.0 142 79.6
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 6.1e-52 207.6 141 80.1
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 6.1e-52 207.6 141 79.4
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 6.1e-52 207.6 141 79.4
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 6.1e-52 207.6 141 79.4
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 6.1e-52 207.6 141 79.4
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 6.1e-52 207.6 141 79.4
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 8.0e-52 207.2 140 78.6
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 1.0e-51 206.8 141 78.0
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.0e-51 206.8 156 74.4
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 1.4e-51 206.5 139 75.5
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 1.4e-51 206.5 141 78.7
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.4e-51 206.5 141 78.0
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 1.4e-51 206.5 141 76.6
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 2.3e-51 205.7 140 76.4
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 3.0e-51 205.3 141 77.3
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 3.0e-51 205.3 141 77.3
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 3.0e-51 205.3 141 77.3
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 3.0e-51 205.3 141 77.3
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 4.0e-51 204.9 141 77.3
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 4.0e-51 204.9 141 77.3
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 4.0e-51 204.9 141 78.0
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 4.0e-51 204.9 141 75.9
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 4.0e-51 204.9 143 74.8
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 5.2e-51 204.5 142 78.2
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 5.2e-51 204.5 142 78.2
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 5.2e-51 204.5 140 79.3
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 5.2e-51 204.5 142 77.5
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 6.8e-51 204.1 141 78.0
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 8.9e-51 203.8 142 78.2
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 8.9e-51 203.8 142 78.2
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 8.9e-51 203.8 145 77.9
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 1.2e-50 203.4 142 76.8
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.2e-50 203.4 141 78.0
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.2e-50 203.4 140 75.7
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.5e-50 203.0 140 75.7
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 2.0e-50 202.6 140 76.4
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 3.4e-50 201.8 134 79.9
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 5.7e-50 201.1 140 77.9
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 7.5e-50 200.7 140 76.4
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 7.5e-50 200.7 140 76.4
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 9.8e-50 200.3 139 71.9
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 1.3e-49 199.9 140 75.0
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.2e-49 199.1 140 77.1
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 3.7e-49 198.4 141 75.9
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 4.9e-49 198.0 142 75.4
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 6.4e-49 197.6 140 73.6
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 8.3e-49 197.2 140 78.6
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.1e-48 196.8 144 75.0
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 3.2e-48 195.3 135 76.3
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 4.1e-48 194.9 133 78.2
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.6e-47 193.0 140 73.6
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 1.6e-47 193.0 133 74.4
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.6e-47 193.0 140 74.3
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 4.6e-47 191.4 139 72.7
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.3e-46 189.9 141 71.6
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.7e-46 189.5 135 75.6
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 3.9e-46 188.3 141 70.9
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 3.9e-46 188.3 139 71.9
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 5.0e-46 188.0 139 70.5
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 6.6e-46 187.6 136 71.3
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 6.6e-46 187.6 140 70.7
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 1.1e-45 186.8 142 73.2
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 1.1e-45 186.8 141 74.5
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 4.3e-45 184.9 136 69.9
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 4.3e-45 184.9 142 72.5
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 7.3e-45 184.1 136 72.1
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 1.2e-44 183.3 136 72.8
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 1.8e-43 179.5 142 71.8
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 3.1e-43 178.7 139 69.1
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 5.2e-43 177.9 140 71.4
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 3.4e-42 175.3 136 66.9
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 5.8e-42 174.5 139 66.2
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 2.9e-41 172.2 140 67.9
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 2.9e-41 172.2 140 67.9
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 3.2e-40 168.7 109 78.0
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 5.4e-40 167.9 136 67.6
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 7.0e-40 167.5 161 63.4
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 3.9e-38 161.8 88 89.8
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 5.0e-38 161.4 140 64.3
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.9e-37 159.5 155 63.2
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 7.3e-37 157.5 141 61.0
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 9.5e-37 157.1 91 84.6
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 6.2e-36 154.5 89 88.8
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 8.1e-36 154.1 115 73.9
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.5e-34 149.8 138 58.7
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 4.9e-33 144.8 99 72.7
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 1.9e-32 142.9 136 55.9
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 7.1e-32 141.0 140 59.3
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 7.1e-32 141.0 136 62.5
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 1.6e-31 139.8 118 61.0
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 3.0e-30 135.6 90 81.1
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 3.6e-28 128.6 138 53.6
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 4.7e-28 128.3 115 58.3
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 4.7e-28 128.3 115 59.1
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.4e-27 126.7 110 65.5
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.8e-27 126.3 146 52.1
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.2e-26 123.6 117 59.8
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 3.4e-26 122.1 90 73.3
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 6.6e-22 107.8 126 47.6
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 1.1e-21 107.1 53 94.3
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 4.0e-19 98.6 141 48.9
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 5.2e-19 98.2 66 68.2
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.4e-16 90.1 73 65.8
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 3.2e-16 89.0 81 64.2
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 3.5e-15 85.5 80 56.2
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 3.5e-07 58.9 136 40.4


User provided reference genes

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