Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025688 Sechium edule HOM05D000010 ORTHO05D004316 9.5e-161 570.1 280 100.0
Sed0025493 Sechium edule HOM05D000010 ORTHO05D004316 2.4e-71 273.1 279 57.7
Sed0024003 Sechium edule HOM05D000010 ORTHO05D004316 1.4e-66 257.3 212 67.9
Sed0024977 Sechium edule HOM05D000010 ORTHO05D004316 9.8e-65 251.1 227 62.6
ClCG09G010760 Citrullus lanatus HOM05D000010 ORTHO05D004316 1.3e-56 224.2 320 46.2
Sed0009730 Sechium edule HOM05D000010 ORTHO05D004316 2.3e-53 213.4 321 45.2
MELO3C013173.2 Cucumis melo HOM05D000010 ORTHO05D004316 2.0e-49 200.3 320 43.4
CsaV3_7G021760 Cucumis sativus L. HOM05D000010 ORTHO05D004316 1.1e-44 184.5 320 42.2
GSVIVG01013671001 Vitis vinifera HOM05D000010 ORTHO05D004316 8.9e-26 121.7 330 33.0
Haze_17847 Corylus avellana HOM05D000010 ORTHO05D004316 5.8e-25 119.0 330 30.6
Sabra02G0049600 Salix brachista HOM05D004266 ORTHO05D005151 6.4e-24 115.5 327 31.5
QL02p035310 Quercus lobata HOM05D000010 ORTHO05D004316 4.1e-23 112.8 324 29.6
Ciclev10000612m.g Citrus clementina HOM05D000010 ORTHO05D004316 5.4e-23 112.5 277 32.5
Prupe.8G045800 Prunus persica HOM05D000010 ORTHO05D004316 5.4e-23 112.5 301 30.9
CiPaw.16G006500 Carya illinoinensis HOM05D000010 ORTHO05D004316 7.1e-23 112.1 329 30.4
Atru.chr13.1955 Acer truncatum HOM05D000010 ORTHO05D004316 9.2e-23 111.7 230 36.5
QL02p036691 Quercus lobata HOM05D000010 ORTHO05D004316 1.2e-22 111.3 321 29.6
CsaV3_6G004800 Cucumis sativus L. HOM05D000010 ORTHO05D004316 2.7e-22 110.2 306 32.7
MELO3C019954.2 Cucumis melo HOM05D000010 ORTHO05D004316 4.6e-22 109.4 305 32.8
Cfa018251 Carpinus fangiana HOM05D000010 ORTHO05D004316 1.3e-21 107.8 323 31.3
MD05G1037700 Malus domestica HOM05D000010 ORTHO05D004316 1.3e-21 107.8 328 30.8
RcHm_v2.0_Chr6g0273431 Rosa chinensis HOM05D000010 ORTHO05D004316 1.7e-21 107.5 327 29.1
MD10G1041500 Malus domestica HOM05D000010 ORTHO05D004316 3.0e-21 106.7 305 31.1
Gohir.D02G067300 Gossypium hirsutum HOM05D000010 ORTHO05D004316 6.6e-21 105.5 311 29.9
Potri.002G061300 Populus trichocarpa HOM05D000010 ORTHO05D004316 6.6e-21 105.5 351 29.3
FAN15G2808 Fragaria x ananassa HOM05D000010 ORTHO05D004316 1.5e-20 104.4 357 28.6
FAN20G2327 Fragaria x ananassa HOM05D000010 ORTHO05D004316 1.5e-20 104.4 357 29.4
Nitab4.5_0000433g0130 Nicotiana tabacum HOM05D000010 ORTHO05D004316 3.3e-20 103.2 326 29.8
Sed0027261 Sechium edule HOM05D000010 ORTHO05D004316 7.3e-20 102.1 293 32.4
Sabra05G0152200 Salix brachista HOM05D000010 ORTHO05D004316 9.6e-20 101.7 247 33.6
Duzib211G0642 Durio zibethinus HOM05D000010 ORTHO05D004316 2.1e-19 100.5 283 32.9
Carub.0001s3233 Capsella rubella HOM05D000010 ORTHO05D004316 2.8e-19 100.1 286 32.5
Peaxi162Scf00226g00319 Petunia axillaris HOM05D000010 ORTHO05D004316 2.8e-19 100.1 324 30.2
Potri.005G200100 Populus trichocarpa HOM05D000010 ORTHO05D004316 3.6e-19 99.8 328 29.6
Migut.N02932 Erythranthe guttata HOM05D000010 ORTHO05D004316 4.7e-19 99.4 320 31.9
PGSC0003DMG400016962 Solanum tuberosum HOM05D000010 ORTHO05D004316 4.7e-19 99.4 316 32.3
FAN24G3419 Fragaria x ananassa HOM05D000010 ORTHO05D004316 6.2e-19 99.0 358 29.1
Sopen12g029470 Solanum pennellii HOM05D000010 ORTHO05D004316 6.2e-19 99.0 308 29.2
Gorai.005G076200 Gossypium raimondii HOM05D000010 ORTHO05D004316 8.1e-19 98.6 255 31.8
Solyc12g056790.2 Solanum lycopersicum HOM05D000010 ORTHO05D004316 8.1e-19 98.6 311 28.0
FAN27G0448 Fragaria x ananassa HOM05D000010 ORTHO05D004316 1.1e-18 98.2 328 28.7
Gohir.A02G061700 Gossypium hirsutum HOM05D000010 ORTHO05D004316 1.4e-18 97.8 291 28.9
Oeu046081.1 Olea europaea HOM05D000010 ORTHO05D004316 1.4e-18 97.8 325 30.2
Peaxi162Scf00160g01636 Petunia axillaris HOM05D000010 ORTHO05D004316 1.4e-18 97.8 321 28.7
CSS0036871 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D004316 1.8e-18 97.4 288 31.6
FvH4_2g12690 Fragaria vesca HOM05D000010 ORTHO05D004316 1.8e-18 97.4 346 28.6
TWI32G0847 Tripterygium wilfordii HOM05D000010 ORTHO05D004316 2.4e-18 97.1 297 30.6
CiPaw.15G010900 Carya illinoinensis HOM05D000010 ORTHO05D004316 4.0e-18 96.3 333 28.8
Gorai.009G260000 Gossypium raimondii HOM05D000010 ORTHO05D004316 4.0e-18 96.3 272 30.1
Dinv41013 Davidia involucrata HOM05D000010 ORTHO05D004316 5.2e-18 95.9 281 32.0
Gohir.D05G248900 Gossypium hirsutum HOM05D000010 ORTHO05D004316 6.8e-18 95.5 272 30.1
CAN.G1010.3 Capsicum annuum HOM05D000010 ORTHO05D004316 8.9e-18 95.1 327 28.4
Glyma.20G172100 Glycine max HOM05D000010 ORTHO05D004316 1.2e-17 94.7 272 31.2
Solyc04g072220.3 Solanum lycopersicum HOM05D000010 ORTHO05D004316 1.2e-17 94.7 314 31.5
CANSAT25G3469 Cannabis sativa HOM05D000010 ORTHO05D004316 1.5e-17 94.4 249 30.5
Duzib093G0838 Durio zibethinus HOM05D000010 ORTHO05D004316 2.0e-17 94.0 289 30.1
Sed0015101 Sechium edule HOM05D000010 ORTHO05D004316 2.0e-17 94.0 310 30.3
AL1G48690 Arabidopsis lyrata HOM05D000010 ORTHO05D004316 2.6e-17 93.6 243 30.9
COL.COLO4_05235 Corchorus olitorius HOM05D000273 ORTHO05D004316 5.8e-17 92.4 271 32.1
Oeu036726.1 Olea europaea HOM05D000010 ORTHO05D004316 5.8e-17 92.4 278 32.4
Aa31LG6G8330 Aethionema arabicum HOM05D000010 ORTHO05D004316 7.6e-17 92.0 273 29.3
Manes.02G186500 Manihot esculenta HOM05D000010 ORTHO05D004316 1.7e-16 90.9 258 31.0
SGA_v2.0_scaffold288G47245 Striga asiatica HOM05D000010 ORTHO05D004316 1.7e-16 90.9 301 29.6
Thecc.08G196700 Theobroma cacao HOM05D000010 ORTHO05D004316 1.7e-16 90.9 271 31.4
CANSAT25G0087 Cannabis sativa HOM05D000010 ORTHO05D004316 2.2e-16 90.5 253 29.2
Nitab4.5_0004295g0050 Nicotiana tabacum HOM05D000010 ORTHO05D004316 2.2e-16 90.5 347 28.2
Cc10_g06320 Coffea canephora HOM05D000010 ORTHO05D004316 2.9e-16 90.1 266 31.6
AT1G34190 Arabidopsis thaliana HOM05D000010 ORTHO05D004316 4.9e-16 89.4 293 32.4
BraA08t32850Z Brassica rapa HOM05D000010 ORTHO05D004316 4.9e-16 89.4 287 31.0
EL10Ac8g19197 Beta vulgaris HOM05D000010 ORTHO05D004316 6.4e-16 89.0 295 30.2
Eucgr.F02771 Eucalyptus grandis HOM05D000010 ORTHO05D004316 6.4e-16 89.0 304 29.3
Oeu061458.1 Olea europaea HOM05D000010 ORTHO05D004316 6.4e-16 89.0 306 31.7
Gohir.A05G247400 Gossypium hirsutum HOM05D000010 ORTHO05D004316 8.4e-16 88.6 300 28.7
Rhsim06G0089300 Rhododendron simsii HOM05D000010 ORTHO05D004316 8.4e-16 88.6 305 30.2
A08p08330 Brassica napus HOM05D000010 ORTHO05D004316 1.1e-15 88.2 288 29.9
Lalb_Chr06g0161851 Lupinus albus HOM05D000010 ORTHO05D004316 1.4e-15 87.8 228 36.4
Phvul.007G085600 Phaseolus vulgaris HOM05D000010 ORTHO05D004316 2.4e-15 87.0 319 29.2
Lalb_Chr21g0305651 Lupinus albus HOM05D000010 ORTHO05D004316 3.2e-15 86.7 327 32.7
Nitab4.5_0001000g0040 Nicotiana tabacum HOM05D000010 ORTHO05D004316 3.2e-15 86.7 201 34.3
vmacro21202 Vaccinium macrocarpon HOM05D000010 ORTHO05D004316 3.2e-15 86.7 300 28.7
CARHR033700 Cardamine hirsuta HOM05D000010 ORTHO05D004316 4.2e-15 86.3 287 28.9
ClCG08G008780 Citrullus lanatus HOM05D000010 ORTHO05D004316 4.2e-15 86.3 286 31.5
Aqoxy5G00913 Aquilegia oxysepala HOM05D000010 ORTHO05D004316 5.4e-15 85.9 222 31.5
VMungo0720G0429 Vigna mungo HOM05D000010 ORTHO05D004316 7.1e-15 85.5 321 28.0
Thhalv10007221m.g Eutrema salsugineum HOM05D000010 ORTHO05D004316 9.3e-15 85.1 255 31.0
PGR042G2358 Punica granatum HOM05D000010 ORTHO05D004316 9.3e-15 85.1 315 29.8
BolC8t47871H Brassica oleracea HOM05D000010 ORTHO05D004316 1.2e-14 84.7 282 31.2
DCAR_019984 Daucus carota HOM05D000010 ORTHO05D004316 2.1e-14 84.0 276 30.4
TAR628G0672 Trochodendron aralioides HOM05D000010 ORTHO05D004316 2.1e-14 84.0 287 28.9
Nn1g05179 Nelumbo nucifera HOM05D000010 ORTHO05D004316 3.5e-14 83.2 306 29.4
A09p32330 Brassica napus HOM05D000010 ORTHO05D004316 4.6e-14 82.8 315 29.8
C05p37580 Brassica napus HOM05D000010 ORTHO05D004316 4.6e-14 82.8 264 31.8
CARHR033690 Cardamine hirsuta HOM05D000010 ORTHO05D004316 4.6e-14 82.8 267 30.3
Glyma.10G219600 Glycine max HOM05D000010 ORTHO05D004316 4.6e-14 82.8 272 30.1
Sp1g29420 Schrenkiella parvula HOM05D000010 ORTHO05D004316 4.6e-14 82.8 328 29.9
BcaB03g13678 Brassica carinata HOM05D000010 ORTHO05D004316 6.0e-14 82.4 247 30.8
Lj7A387G68 Lonicera japonica HOM05D000010 ORTHO05D004316 7.8e-14 82.0 195 31.8
C06p11810 Brassica napus HOM05D000010 ORTHO05D004316 1.0e-13 81.6 292 29.8
BraA09t38772Z Brassica rapa HOM05D000010 ORTHO05D004316 1.7e-13 80.9 271 31.0
Lj4A706T79 Lonicera japonica HOM05D000010 ORTHO05D004316 3.9e-13 79.7 263 31.9
Sp1g29410 Schrenkiella parvula HOM05D000010 ORTHO05D004316 3.9e-13 79.7 302 31.5
AL1G48680 Arabidopsis lyrata HOM05D000010 ORTHO05D004316 5.1e-13 79.3 274 29.6
BcaC05g27760 Brassica carinata HOM05D000010 ORTHO05D004316 5.1e-13 79.3 264 31.4
Sc20g0006940 Simmondsia chinensis HOM05D000010 ORTHO05D004316 5.1e-13 79.3 295 28.1
Ca_10641_v3 Cicer arietinum L. HOM05D000010 ORTHO05D004316 8.7e-13 78.6 297 28.3
Duzib116G0504 Durio zibethinus HOM05D000010 ORTHO05D004316 1.1e-12 78.2 272 27.6
PGSC0003DMG400031149 Solanum tuberosum HOM05D000010 ORTHO05D004316 1.1e-12 78.2 184 33.7
Lj5g0009860 Lotus japonicus HOM05D000010 ORTHO05D004316 1.5e-12 77.8 325 27.7
A05p23960 Brassica napus HOM05D000010 ORTHO05D004316 1.9e-12 77.4 267 30.7
BraA05t21275Z Brassica rapa HOM05D000010 ORTHO05D004316 1.9e-12 77.4 267 30.7
THA.LOC104816153 Tarenaya hassleriana HOM05D000010 ORTHO05D004316 1.9e-12 77.4 268 29.1
AUR62029057 Chenopodium quinoa HOM05D000010 ORTHO05D004316 2.5e-12 77.0 194 34.5
Psat6g189280 Pisum sativum HOM05D000010 ORTHO05D004316 2.5e-12 77.0 288 31.2
HanXRQChr10g0278711 Helianthus annuus HOM05D000010 ORTHO05D004316 3.3e-12 76.6 186 32.8
TWI60G0159 Tripterygium wilfordii HOM05D000010 ORTHO05D004316 3.3e-12 76.6 282 28.4
BcaB07g33154 Brassica carinata HOM05D000010 ORTHO05D004316 5.6e-12 75.9 299 28.1
ECA246G2771 Erigeron canadensis HOM05D000010 ORTHO05D004316 9.6e-12 75.1 290 29.7
Sopen04g028400 Solanum pennellii HOM05D000010 ORTHO05D004316 1.3e-11 74.7 48 70.8
THA.LOC104806775 Tarenaya hassleriana HOM05D000010 ORTHO05D004316 1.3e-11 74.7 139 34.5
AT1G34180 Arabidopsis thaliana HOM05D000010 ORTHO05D004316 1.6e-11 74.3 78 51.3
BolC6t36315H Brassica oleracea HOM05D000010 ORTHO05D004316 1.6e-11 74.3 268 29.1
BcaC08g43803 Brassica carinata HOM05D000010 ORTHO05D004316 2.1e-11 73.9 269 30.1
AUR62033952 Chenopodium quinoa HOM05D000010 ORTHO05D004316 2.1e-11 73.9 168 34.5
Lsat_1_v5_gn_6_99960 Lactuca sativa HOM05D000010 ORTHO05D004316 2.8e-11 73.6 192 34.4
PSO017G6364 Papaver somniferum HOM05D000010 ORTHO05D004316 2.8e-11 73.6 325 26.5
Medtr1g097300 Medicago truncatula HOM05D000010 ORTHO05D004316 3.6e-11 73.2 279 28.0
Oeu027224.1 Olea europaea HOM05D000010 ORTHO05D004316 3.6e-11 73.2 205 33.7
BcaC05g27761 Brassica carinata HOM05D000010 ORTHO05D004316 4.8e-11 72.8 268 30.2
C05p37590 Brassica napus HOM05D000010 ORTHO05D004316 4.8e-11 72.8 268 30.2
PSO170G5244 Papaver somniferum HOM05D000010 ORTHO05D004316 4.8e-11 72.8 323 27.2
BcaB07g33155 Brassica carinata HOM05D000010 ORTHO05D004316 6.2e-11 72.4 60 55.0
Thhalv10007196m.g Eutrema salsugineum HOM05D000010 ORTHO05D004316 8.1e-11 72.0 60 58.3
Nitab4.5_0004541g0050 Nicotiana tabacum HOM05D000010 ORTHO05D004316 8.1e-11 72.0 50 66.0
BolC5t32498H Brassica oleracea HOM05D000010 ORTHO05D004316 1.4e-10 71.2 266 30.5
TPR.G23152 Trifolium pratense HOM05D000010 ORTHO05D004316 1.4e-10 71.2 48 66.7
Manes.18G096600 Manihot esculenta HOM05D000010 ORTHO05D004316 2.4e-10 70.5 48 66.7
Ah.14g085180 Amaranthus hybridus HOM05D000010 ORTHO05D004316 3.1e-10 70.1 142 38.7
SalBow6G0248 Salvia bowleyana HOM05D000010 ORTHO05D004316 3.1e-10 70.1 114 40.4
Carub.0001s3231 Capsella rubella HOM05D000010 ORTHO05D004316 4.0e-10 69.7 59 52.5
Hund25941 Selenicereus undatus HOM05D000010 ORTHO05D004316 5.3e-10 69.3 117 37.6
THA.LOC104813091 Tarenaya hassleriana HOM05D000010 ORTHO05D004316 5.3e-10 69.3 131 35.1
A05p23920 Brassica napus HOM05D000010 ORTHO05D004316 6.9e-10 68.9 60 56.7
BraA05t21271Z Brassica rapa HOM05D000010 ORTHO05D004316 6.9e-10 68.9 60 56.7
SGA_v2.0_scaffold553G52893 Striga asiatica HOM05D000010 ORTHO05D004316 6.9e-10 68.9 144 36.1
unitig_578.g16215 Utricularia gibba HOM05D000010 ORTHO05D004316 6.9e-10 68.9 58 58.6
HanXRQChr05g0162521 Helianthus annuus HOM05D000010 ORTHO05D004316 9.0e-10 68.6 179 33.0
BcaB03g13679 Brassica carinata HOM05D000010 ORTHO05D004316 1.2e-09 68.2 50 60.0
DCAR_009603 Daucus carota HOM05D000010 ORTHO05D004316 1.2e-09 68.2 48 64.6
TPR.G36423 Trifolium pratense HOM05D000010 ORTHO05D004316 1.2e-09 68.2 78 46.2
unitig_8.g4828 Utricularia gibba HOM05D000010 ORTHO05D004316 1.2e-09 68.2 58 60.3
MSTRG.24485 Avicennia marina HOM05D000010 ORTHO05D004316 3.4e-09 66.6 213 28.2
MBI04_g08707_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D004316 3.4e-09 66.6 72 51.4
CARHR032220 Cardamine hirsuta HOM05D000010 ORTHO05D004316 5.8e-09 65.9 59 55.9
C07p20930 Brassica napus HOM05D000010 ORTHO05D004316 9.9e-09 65.1 236 27.1
Migut.N02933 Erythranthe guttata HOM05D000010 ORTHO05D004316 9.9e-09 65.1 297 26.9
RcHm_v2.0_Chr3g0457681 Rosa chinensis HOM05D000010 ORTHO05D000063 9.9e-09 65.1 53 58.5
A07p14210 Brassica napus HOM05D000010 ORTHO05D004316 1.3e-08 64.7 193 29.5
Lsat_1_v5_gn_9_42720 Lactuca sativa HOM05D000010 ORTHO05D004316 1.7e-08 64.3 48 62.5
ECA232G2455 Erigeron canadensis HOM05D000001 ORTHO05D009971 2.2e-08 63.9 170 35.3
unitig_21.g20591 Utricularia gibba HOM05D000010 ORTHO05D004316 2.2e-08 63.9 47 59.6
AT1G32870 Arabidopsis thaliana HOM05D000010 ORTHO05D004316 2.9e-08 63.5 61 50.8
BolC7t42625H Brassica oleracea HOM05D000010 ORTHO05D004316 2.9e-08 63.5 181 27.6
BcaB03g14185 Brassica carinata HOM05D000010 ORTHO05D004316 4.9e-08 62.8 48 58.3
BcaC06g34990 Brassica carinata HOM05D000010 ORTHO05D004316 8.4e-08 62.0 167 28.7
Aa31LG7G6660 Aethionema arabicum HOM05D000010 ORTHO05D004316 1.4e-07 61.2 74 50.0
Thhalv10007369m.g Eutrema salsugineum HOM05D000010 ORTHO05D004316 1.4e-07 61.2 48 56.2
Carub.0001s3117 Capsella rubella HOM05D000010 ORTHO05D004316 1.9e-07 60.8 52 57.7
Cpa.g.sc26.135 Carica papaya HOM05D000010 ORTHO05D004316 1.2e-06 58.2 285 25.6
FAN05G5774 Fragaria x ananassa HOM05D000010 ORTHO05D004316 1.6e-06 57.8 53 52.8
FvH4_6g07970 Fragaria vesca HOM05D000010 ORTHO05D000063 2.1e-06 57.4 53 52.8
FAN14G1711 Fragaria x ananassa HOM05D000010 ORTHO05D004316 2.1e-06 57.4 53 52.8
AL1G47170 Arabidopsis lyrata HOM05D000010 ORTHO05D004316 3.5e-06 56.6 50 54.0
FAN02G0526 Fragaria x ananassa HOM05D000010 ORTHO05D004316 3.5e-06 56.6 53 52.8
HPP92_007454 Vanilla planifolia HOM05D000010 ORTHO05D004316 4.6e-06 56.2 48 58.3
HPP92_027664 Vanilla planifolia HOM05D000010 ORTHO05D000063 4.6e-06 56.2 48 58.3


User provided reference genes

Program Settings