Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 3577.7 1819 100.0
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 3218.7 1821 89.9
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 3201.0 1823 89.4
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 3152.1 1889 85.8
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 3063.5 1823 86.1
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2608.2 1876 72.7
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2604.3 1844 73.9
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2564.6 1824 72.5
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2562.3 1858 71.9
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2541.9 1848 71.6
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2539.2 1839 72.1
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2538.8 1833 72.6
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2534.2 1813 72.9
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2512.3 1826 71.6
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2506.1 1829 71.7
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2499.9 1828 71.1
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2493.0 1812 72.0
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2491.1 1818 71.3
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2481.8 1821 71.4
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2481.8 1826 70.7
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2477.6 1838 70.8
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2476.8 1838 71.3
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2476.8 1832 71.0
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2473.4 1835 70.7
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2472.2 1835 70.7
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2469.9 1862 69.8
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2463.7 1833 70.5
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2455.6 1841 70.3
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2450.2 1812 70.6
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2441.4 1812 70.4
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2439.5 1842 70.1
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2426.0 1808 70.5
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2415.2 1837 68.8
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2412.1 1837 69.0
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2405.6 1845 69.3
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2404.4 1838 68.9
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2403.6 1841 68.5
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2402.1 1845 69.1
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2401.3 1833 68.8
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2396.3 1838 68.7
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2393.2 1846 69.5
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2392.8 1831 68.9
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2382.1 1827 69.0
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2361.6 1850 68.4
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2358.6 1857 68.7
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2353.6 1835 68.0
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2350.9 1836 67.7
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2340.8 1832 67.3
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2335.1 1908 66.0
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2328.9 1832 67.1
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2328.5 1839 67.8
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2326.6 1836 67.8
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2325.1 1809 67.6
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2323.1 1830 68.0
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2316.6 1838 66.3
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2308.9 1838 66.1
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2303.1 1846 67.0
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2303.1 1846 67.0
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2302.7 1796 68.0
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2244.5 1827 65.8
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2243.8 1824 65.6
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2224.1 1828 65.8
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2221.0 1834 65.6
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2218.4 1821 65.2
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2213.0 1827 64.5
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2210.6 1837 64.2
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2200.6 1822 65.4
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2195.2 1827 65.0
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2193.7 1823 64.8
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2192.5 1733 66.7
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2177.1 1828 64.2
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2149.0 1850 62.9
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2146.3 1829 63.5
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2137.1 1818 63.5
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2103.9 1817 62.9
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2098.9 1819 62.8
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2081.2 1827 62.0
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2077.0 1820 62.5
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2071.2 1819 62.3
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2069.7 1823 62.3
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2061.2 1825 63.0
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2060.0 1827 61.3
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2029.2 1822 61.3
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2028.4 1820 61.2
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2011.9 1762 62.2
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1982.2 1821 60.7
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1956.0 1864 57.7
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1952.9 1827 59.9
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1938.3 1814 59.2
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1938.3 1814 59.2
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1937.9 1817 59.1
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1933.7 1827 58.4
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1924.1 1838 58.4
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1856.3 1823 58.1
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1782.3 1832 54.1
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1727.6 1845 52.6
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1722.2 1366 66.3
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1689.9 1489 62.1
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1647.5 1696 54.5
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1634.4 1796 53.2
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1582.0 1332 64.4
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1578.9 1573 58.0
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1577.8 1218 68.7
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1573.9 1344 63.4
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1522.7 1361 61.8
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1453.3 1305 61.1
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1433.7 1785 49.2
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1369.0 1191 62.2
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1313.1 1985 42.2
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1262.3 1103 63.4
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1244.6 1003 66.1
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1215.3 1361 52.6
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1181.0 1836 41.6
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1166.8 1923 39.7
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1148.7 1956 38.8
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1142.1 1137 56.8
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1125.5 2012 38.0
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 4.4e-307 1058.9 872 64.9
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 1.4e-257 894.4 1378 41.8
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 3.9e-239 833.2 1475 38.2
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 3.0e-215 753.8 632 61.2
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 2.2e-210 737.6 476 78.4
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 2.9e-210 737.3 521 73.1
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 1.1e-185 655.6 609 59.1
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 1.3e-181 642.1 464 70.9
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 1.8e-180 638.3 487 71.0
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 1.9e-169 601.7 381 80.1
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 2.6e-166 591.3 617 53.6
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 4.0e-159 567.4 560 58.2
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 1.3e-157 562.4 355 77.5
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 8.3e-157 559.7 336 83.3
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 3.1e-151 541.2 361 74.2
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.7e-147 528.1 429 62.5
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 3.9e-138 497.7 484 59.1
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.0e-134 485.3 390 66.9
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 4.5e-126 457.6 323 68.7
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 2.1e-123 448.7 399 62.2
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 1.2e-115 422.9 268 83.6
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 2.3e-114 418.7 259 81.1
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 1.5e-110 406.0 436 55.5
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 8.0e-75 287.3 302 55.6
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 4.0e-74 285.0 301 55.5
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 7.5e-73 280.8 311 56.6
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 1.5e-49 203.4 131 71.8
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 3.1e-42 179.1 122 74.6
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 9.6e-20 104.4 114 49.1
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 3.2e-15 89.4 69 66.7
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 5.4e-15 88.6 96 51.0
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 2.1e-14 86.7 70 64.3
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.7e-13 83.6 66 63.6
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 8.7e-13 81.3 39 87.2
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 2.5e-12 79.7 112 44.6
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 3.3e-12 79.3 204 26.0
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 7.3e-12 78.2 69 58.0
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 1.3e-11 77.4 111 44.1
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 3.1e-10 72.8 69 52.2
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 6.9e-10 71.6 179 28.5
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 3.2e-07 62.8 37 81.1
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 4.2e-07 62.4 188 29.8


User provided reference genes

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